import time import numpy as np from torch import cuda from sklearn.pipeline import make_pipeline from sklearn.decomposition import TruncatedSVD from sklearn.feature_extraction.text import TfidfVectorizer from umap import UMAP if cuda.is_available(): torch_device = "gpu" else: torch_device = "cpu" def make_or_load_embeddings(docs, file_list, data_file_name_no_ext, embedding_model, return_intermediate_files, embeddings_super_compress, low_resource_mode_opt): embeddings_file_names = [string.lower() for string in file_list if "embedding" in string.lower()] if embeddings_file_names: print("Loading embeddings from file.") embeddings_out = np.load(embeddings_file_names[0])['arr_0'] # If embedding files have 'super_compress' in the title, they have been multiplied by 100 before save if "compress" in embeddings_file_names[0]: embeddings_out /= 100 # print("embeddings loaded: ", embeddings_out) if not embeddings_file_names: tic = time.perf_counter() print("Starting to embed documents.") # Custom model # If on CPU, don't resort to embedding models if low_resource_mode_opt == "Yes": print("Creating simplified 'sparse' embeddings based on TfIDF") embedding_model = make_pipeline( TfidfVectorizer(), TruncatedSVD(100) ) embeddings_out = embedding_model.encode(sentences=docs, show_progress_bar = True, batch_size = 32) elif low_resource_mode_opt == "No": print("Creating dense embeddings based on transformers model") embeddings_out = embedding_model.encode(sentences=docs, max_length=1024, show_progress_bar = True, batch_size = 32) # For Jina # # #import torch #from torch.nn.utils.rnn import pad_sequence # Assuming embeddings_out is a list of tensors #embeddings_out = [torch.tensor(embedding) for embedding in embeddings_out] # Pad the sequences # Set batch_first=True if you want the batch dimension to be the first dimension #embeddings_out = pad_sequence(embeddings_out, batch_first=True, padding_value=0) toc = time.perf_counter() time_out = f"The embedding took {toc - tic:0.1f} seconds" print(time_out) # If you want to save your files for next time if return_intermediate_files == "Yes": if embeddings_super_compress == "No": semantic_search_file_name = data_file_name_no_ext + '_' + 'embeddings.npz' np.savez_compressed(semantic_search_file_name, embeddings_out) else: semantic_search_file_name = data_file_name_no_ext + '_' + 'embedding_compress.npz' embeddings_out_round = np.round(embeddings_out, 3) embeddings_out_round *= 100 # Rounding not currently used np.savez_compressed(semantic_search_file_name, embeddings_out_round) # Pre-reduce embeddings for visualisation purposes reduced_embeddings = UMAP(n_neighbors=15, n_components=2, min_dist=0.0, metric='cosine', random_state=42).fit_transform(embeddings_out) return embeddings_out, reduced_embeddings