Update geneformer/emb_extractor.py (#453)

add check to ensure emb_label is None for getting state embs dict

change default emb to cls

precommit formatting

update with 12L and 20L i4096 gc95M models, multitask and quantiz code

move dicts to init

add random state to umap

update refs to get_model_emb_dims

embs_df with all model embeddings (#363)

clone embs_i to resolve memory leak in cls embs

update perturber stats to reflect cos sim and emb_extractor to suppress warnings for non-cls

update to enable cls emb

Update geneformer/emb_extractor.py (#350)

Add classifier module and examples

Update geneformer/emb_extractor.py (#303)

edit docstring codeblock highlighting

change doc formatting

add sphinx docs

Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp

Add option to output embs as tensor

Add memory-efficient method for computing emb summary statistics

Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)

Add error message for "gene" embedding extraction under development.

Rename heatmap legend to be correct label

Add function to extract and plot cell embeddings