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ctheodoris
/
Geneformer
like
212
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
Inference Endpoints
License:
apache-2.0
Model card
Files
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05bffd6
Geneformer
/
geneformer
15 contributors
History:
104 commits
hchen725
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05bffd6
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6 months ago
__init__.py
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6 months ago
classifier.py
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move dicts to init
7 months ago
classifier_utils.py
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16.7 kB
save pval
7 months ago
collator_for_classification.py
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29.9 kB
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7 months ago
emb_extractor.py
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31.5 kB
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7 months ago
ensembl_mapping_dict_gc95M.pickle
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pickle
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3.96 MB
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6 months ago
ensembl_mapping_dict_gc95M.pkl
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pickle
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6 months ago
evaluation_utils.py
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7 months ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
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941 kB
Add Geneformer tokenizer and updated model card
over 2 years ago
gene_median_dictionary_gc95M.pkl
pickle
Detected Pickle imports (2)
"numpy.core.multiarray.scalar"
,
"numpy.dtype"
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6 months ago
gene_name_id_dict.pkl
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pickle
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over 1 year ago
gene_name_id_dict_gc95M.pkl
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pickle
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1.66 MB
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6 months ago
in_silico_perturber.py
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39.2 kB
add typing list import
7 months ago
in_silico_perturber_stats.py
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44.1 kB
move dicts to init
7 months ago
perturber_utils.py
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26.8 kB
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7 months ago
pretrainer.py
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37.1 kB
move dicts to init
7 months ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
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almost 2 years ago
token_dictionary_gc95M.pkl
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pickle
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426 kB
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6 months ago
tokenizer.py
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Update geneformer/tokenizer.py
6 months ago
