Datasets:

ShijiaD

/

code-with-ast-sequence-comment-cleaned-hierarchical-annotated

like 0

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{'id': '16', 'type': 'string', 'children': [], 'value': '"http://rest.kegg.jp/list/"'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'organism'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'all_genes'}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'all_genes'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'dbs'}; {'id': '32', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '33', 'type': 'while_statement', 'children': ['34', '40']}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '39'], 'value': '=='}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'dbs'}, {'id': '39', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'for_statement', 'children': ['42', '43', '44']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'all_genes'}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'if_statement', 'children': ['46', '52', '168']}; {'id': '46', 'type': 'comparison_operator', 'children': ['47', '51'], 'value': '=='}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'dbs'}, {'id': '51', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '52', 'type': 'block', 'children': ['53', '64', '77', '86', '98']}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'kid'}; {'id': '56', 'type': 'subscript', 'children': ['57', '63']}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'g'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'string', 'children': [], 'value': '"\\t"'}, {'id': '63', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'gene'}, {'id': '67', 'type': 'call', 'children': ['68', '76']}; {'id': '68', 'type': 'attribute', 'children': ['69', '75']}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'urlopen'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '+'}, {'id': '73', 'type': 'string', 'children': [], 'value': '"http://rest.kegg.jp/get/"'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'kid'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '76', 'type': 'argument_list', 'children': []}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'DBLINKS'}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'gene'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'assignment', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'DBLINKS'}, {'id': '89', 'type': 'list_comprehension', 'children': ['90', '91', '94']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '91', 'type': 'for_in_clause', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'DBLINKS'}; {'id': '94', 'type': 'if_clause', 'children': ['95']}, {'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': 'in'}; {'id': '96', 'type': 'string', 'children': [], 'value': '":"'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '98', 'type': 'for_statement', 'children': ['99', '100', '101']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'DBLINKS'}, {'id': '101', 'type': 'block', 'children': ['102', '111', '122']}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'string', 'children': [], 'value': '" "'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'test'}; {'id': '114', 'type': 'subscript', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'test'}; {'id': '116', 'type': 'binary_operator', 'children': ['117', '121'], 'value': '-'}, {'id': '117', 'type': 'call', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '121', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '122', 'type': 'if_statement', 'children': ['123', '126']}, {'id': '123', 'type': 'comparison_operator', 'children': ['124', '125'], 'value': 'in'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'ens_ids'}; {'id': '126', 'type': 'block', 'children': ['127', '139', '150', '161']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'DBLINK'}; {'id': '130', 'type': 'list_comprehension', 'children': ['131', '132', '135']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '132', 'type': 'for_in_clause', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'DBLINKS'}, {'id': '135', 'type': 'if_clause', 'children': ['136']}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '138'], 'value': 'in'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'test'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'assignment', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'DBLINK'}; {'id': '142', 'type': 'call', 'children': ['143', '148']}, {'id': '143', 'type': 'attribute', 'children': ['144', '147']}; {'id': '144', 'type': 'subscript', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'DBLINK'}; {'id': '146', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'string', 'children': [], 'value': '":"'}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'assignment', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'DBLINK'}, {'id': '153', 'type': 'subscript', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'DBLINK'}, {'id': '155', 'type': 'binary_operator', 'children': ['156', '160'], 'value': '-'}; {'id': '156', 'type': 'call', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'DBLINK'}; {'id': '160', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'call', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'dbs'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'DBLINK'}; {'id': '168', 'type': 'else_clause', 'children': ['169']}, {'id': '169', 'type': 'block', 'children': ['170']}; {'id': '170', 'type': 'break_statement', 'children': []}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'assignment', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'ens_db'}; {'id': '174', 'type': 'call', 'children': ['175', '180']}, {'id': '175', 'type': 'attribute', 'children': ['176', '179']}; 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{'id': '192', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '193', 'type': 'expression_statement', 'children': ['194']}; {'id': '194', 'type': 'assignment', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'test_db'}; {'id': '196', 'type': 'call', 'children': ['197', '209']}, {'id': '197', 'type': 'attribute', 'children': ['198', '208']}; {'id': '198', 'type': 'call', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'urlopen'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'binary_operator', 'children': ['202', '207'], 'value': '+'}; {'id': '202', 'type': 'binary_operator', 'children': ['203', '206'], 'value': '+'}, {'id': '203', 'type': 'binary_operator', 'children': ['204', '205'], 'value': '+'}; {'id': '204', 'type': 'string', 'children': [], 'value': '"http://rest.genome.jp/link/"'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'ens_db'}; {'id': '206', 'type': 'string', 'children': [], 'value': '"/"'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'organism'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '209', 'type': 'argument_list', 'children': []}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'assignment', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'test_db'}, {'id': '213', 'type': 'call', 'children': ['214', '217']}; {'id': '214', 'type': 'attribute', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'test_db'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '217', 'type': 'argument_list', 'children': ['218']}; {'id': '218', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '219', 'type': 'if_statement', 'children': ['220', '226', '260']}; {'id': '220', 'type': 'comparison_operator', 'children': ['221', '225'], 'value': '=='}, {'id': '221', 'type': 'call', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'test_db'}, {'id': '225', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '226', 'type': 'block', 'children': ['227', '238', '243', '248', '256']}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'call', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '230', 'type': 'argument_list', 'children': ['231']}, {'id': '231', 'type': 'binary_operator', 'children': ['232', '237'], 'value': '+'}; {'id': '232', 'type': 'binary_operator', 'children': ['233', '236'], 'value': '+'}, {'id': '233', 'type': 'binary_operator', 'children': ['234', '235'], 'value': '+'}; {'id': '234', 'type': 'string', 'children': [], 'value': '"For "'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'organism'}; {'id': '236', 'type': 'string', 'children': [], 'value': '" the following db was found: "'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'ens_db'}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '241', 'type': 'argument_list', 'children': ['242']}; {'id': '242', 'type': 'string', 'children': [], 'value': '"This database does not seem to be valid KEGG-linked database identifier"'}, {'id': '243', 'type': 'expression_statement', 'children': ['244']}; {'id': '244', 'type': 'call', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'string', 'children': [], 'value': '"For \\n\'hsa\' use \'ensembl-hsa\'\\n\'mmu\' use \'ensembl-mmu\'\\n\'cel\' use \'EnsemblGenomes-Gn\'\\n\'dme\' use \'FlyBase\'"'}; {'id': '248', 'type': 'expression_statement', 'children': ['249']}, {'id': '249', 'type': 'call', 'children': ['250', '255']}; {'id': '250', 'type': 'attribute', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'flush'}, {'id': '255', 'type': 'argument_list', 'children': []}; {'id': '256', 'type': 'expression_statement', 'children': ['257']}, {'id': '257', 'type': 'assignment', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'ens_db'}, {'id': '259', 'type': 'None', 'children': []}; {'id': '260', 'type': 'else_clause', 'children': ['261']}, {'id': '261', 'type': 'block', 'children': ['262', '273']}; {'id': '262', 'type': 'expression_statement', 'children': ['263']}, {'id': '263', 'type': 'call', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '265', 'type': 'argument_list', 'children': ['266']}; {'id': '266', 'type': 'binary_operator', 'children': ['267', '272'], 'value': '+'}, {'id': '267', 'type': 'binary_operator', 'children': ['268', '271'], 'value': '+'}; {'id': '268', 'type': 'binary_operator', 'children': ['269', '270'], 'value': '+'}, {'id': '269', 'type': 'string', 'children': [], 'value': '"For "'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'organism'}, {'id': '271', 'type': 'string', 'children': [], 'value': '" the following db was found: "'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'ens_db'}, {'id': '273', 'type': 'expression_statement', 'children': ['274']}; {'id': '274', 'type': 'call', 'children': ['275', '280']}, {'id': '275', 'type': 'attribute', 'children': ['276', '279']}; {'id': '276', 'type': 'attribute', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'flush'}; {'id': '280', 'type': 'argument_list', 'children': []}, {'id': '281', 'type': 'return_statement', 'children': ['282']}

def databasesKEGG(organism,ens_ids): all_genes=urlopen("http://rest.kegg.jp/list/"+organism).read() all_genes=all_genes.split("\n") dbs=[] while len(dbs) == 0: for g in all_genes: if len(dbs) == 0: kid = g.split("\t")[0] gene=urlopen("http://rest.kegg.jp/get/"+kid).read() DBLINKS=gene.split("\n") DBLINKS=[ s for s in DBLINKS if ":" in s ] for d in DBLINKS: test=d.split(" ") test=test[len(test)-1] if test in ens_ids: DBLINK=[ s for s in DBLINKS if test in s ] DBLINK=DBLINK[0].split(":") DBLINK=DBLINK[len(DBLINK)-2] dbs.append(DBLINK) else: break ens_db=dbs[0].split(" ") ens_db=ens_db[len(ens_db)-1] test_db=urlopen("http://rest.genome.jp/link/"+ens_db+"/"+organism).read() test_db=test_db.split("\n") if len(test_db) == 1: print("For "+organism+" the following db was found: "+ens_db) print("This database does not seem to be valid KEGG-linked database identifier") print("For \n'hsa' use 'ensembl-hsa'\n'mmu' use 'ensembl-mmu'\n'cel' use 'EnsemblGenomes-Gn'\n'dme' use 'FlyBase'") sys.stdout.flush() ens_db = None else: print("For "+organism+" the following db was found: "+ens_db) sys.stdout.flush() return ens_db

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{'id': '304', 'type': 'attribute', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '307', 'type': 'argument_list', 'children': ['308']}; {'id': '308', 'type': 'subscript', 'children': ['309', '319']}, {'id': '309', 'type': 'subscript', 'children': ['310', '315', '316']}; {'id': '310', 'type': 'subscript', 'children': ['311', '314']}, {'id': '311', 'type': 'attribute', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '313', 'type': 'identifier', 'children': [], 'value': '_dyn_fields'}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'field_cname'}, {'id': '315', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '316', 'type': 'attribute', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'validator'}; {'id': '318', 'type': 'identifier', 'children': [], 'value': '__name__'}, {'id': '319', 'type': 'string', 'children': [], 'value': "'kwargs'"}; {'id': '320', 'type': 'block', 'children': ['321', '340']}, {'id': '321', 'type': 'try_statement', 'children': ['322', '337']}; {'id': '322', 'type': 'block', 'children': ['323']}, {'id': '323', 'type': 'expression_statement', 'children': ['324']}; {'id': '324', 'type': 'assignment', 'children': ['325', '326']}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '326', 'type': 'call', 'children': ['327', '330']}, {'id': '327', 'type': 'attribute', 'children': ['328', '329']}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 're_field_name'}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'sub'}; {'id': '330', 'type': 'argument_list', 'children': ['331', '336']}, {'id': '331', 'type': 'binary_operator', 'children': ['332', '335'], 'value': '+'}; {'id': '332', 'type': 'binary_operator', 'children': ['333', '334'], 'value': '+'}, {'id': '333', 'type': 'string', 'children': [], 'value': "r'\\1'"}; {'id': '334', 'type': 'string', 'children': [], 'value': "'_'"}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'current_set_number'}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'arg'}, {'id': '337', 'type': 'except_clause', 'children': ['338']}; {'id': '338', 'type': 'block', 'children': ['339']}, {'id': '339', 'type': 'pass_statement', 'children': []}; {'id': '340', 'type': 'expression_statement', 'children': ['341']}, {'id': '341', 'type': 'assignment', 'children': ['342', '345']}; {'id': '342', 'type': 'subscript', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '346', 'type': 'expression_statement', 'children': ['347']}, {'id': '347', 'type': 'call', 'children': ['348', '351']}; {'id': '348', 'type': 'attribute', 'children': ['349', '350']}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'validators'}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '351', 'type': 'argument_list', 'children': ['352']}; {'id': '352', 'type': 'call', 'children': ['353', '354']}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'validator'}; {'id': '354', 'type': 'argument_list', 'children': ['355', '357']}, {'id': '355', 'type': 'list_splat', 'children': ['356']}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '357', 'type': 'dictionary_splat', 'children': ['358']}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '359', 'type': 'expression_statement', 'children': ['360']}; {'id': '360', 'type': 'assignment', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'field_type'}; {'id': '362', 'type': 'subscript', 'children': ['363', '368']}, {'id': '363', 'type': 'subscript', 'children': ['364', '367']}; {'id': '364', 'type': 'attribute', 'children': ['365', '366']}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '366', 'type': 'identifier', 'children': [], 'value': '_dyn_fields'}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'field_cname'}; {'id': '368', 'type': 'string', 'children': [], 'value': "'type'"}, {'id': '369', 'type': 'expression_statement', 'children': ['370']}; {'id': '370', 'type': 'assignment', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'field_label'}; {'id': '372', 'type': 'subscript', 'children': ['373', '378']}, {'id': '373', 'type': 'subscript', 'children': ['374', '377']}; {'id': '374', 'type': 'attribute', 'children': ['375', '376']}, {'id': '375', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '376', 'type': 'identifier', 'children': [], 'value': '_dyn_fields'}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'field_cname'}; {'id': '378', 'type': 'string', 'children': [], 'value': "'label'"}, {'id': '379', 'type': 'expression_statement', 'children': ['380']}; {'id': '380', 'type': 'assignment', 'children': ['381', '382']}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'field_args'}; {'id': '382', 'type': 'subscript', 'children': ['383', '388']}, {'id': '383', 'type': 'subscript', 'children': ['384', '387']}; {'id': '384', 'type': 'attribute', 'children': ['385', '386']}, {'id': '385', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '386', 'type': 'identifier', 'children': [], 'value': '_dyn_fields'}, {'id': '387', 'type': 'identifier', 'children': [], 'value': 'field_cname'}; {'id': '388', 'type': 'string', 'children': [], 'value': "'args'"}, {'id': '389', 'type': 'expression_statement', 'children': ['390']}; {'id': '390', 'type': 'assignment', 'children': ['391', '392']}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'field_kwargs'}; {'id': '392', 'type': 'subscript', 'children': ['393', '398']}, {'id': '393', 'type': 'subscript', 'children': ['394', '397']}; {'id': '394', 'type': 'attribute', 'children': ['395', '396']}, {'id': '395', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '396', 'type': 'identifier', 'children': [], 'value': '_dyn_fields'}, {'id': '397', 'type': 'identifier', 'children': [], 'value': 'field_cname'}; {'id': '398', 'type': 'string', 'children': [], 'value': "'kwargs'"}, {'id': '399', 'type': 'expression_statement', 'children': ['400']}; {'id': '400', 'type': 'call', 'children': ['401', '402']}, {'id': '401', 'type': 'identifier', 'children': [], 'value': 'setattr'}; {'id': '402', 'type': 'argument_list', 'children': ['403', '404', '405']}, {'id': '403', 'type': 'identifier', 'children': [], 'value': 'F'}; {'id': '404', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '405', 'type': 'call', 'children': ['406', '407']}; {'id': '406', 'type': 'identifier', 'children': [], 'value': 'field_type'}, {'id': '407', 'type': 'argument_list', 'children': ['408', '409', '412', '414']}; {'id': '408', 'type': 'identifier', 'children': [], 'value': 'field_label'}, {'id': '409', 'type': 'keyword_argument', 'children': ['410', '411']}; {'id': '410', 'type': 'identifier', 'children': [], 'value': 'validators'}, {'id': '411', 'type': 'identifier', 'children': [], 'value': 'validators'}; {'id': '412', 'type': 'list_splat', 'children': ['413']}, {'id': '413', 'type': 'identifier', 'children': [], 'value': 'field_args'}; {'id': '414', 'type': 'dictionary_splat', 'children': ['415']}, {'id': '415', 'type': 'identifier', 'children': [], 'value': 'field_kwargs'}; {'id': '416', 'type': 'if_statement', 'children': ['417', '420', '427']}, {'id': '417', 'type': 'attribute', 'children': ['418', '419']}; {'id': '418', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '419', 'type': 'identifier', 'children': [], 'value': 'flask_wtf'}; {'id': '420', 'type': 'block', 'children': ['421']}, {'id': '421', 'type': 'expression_statement', 'children': ['422']}; {'id': '422', 'type': 'assignment', 'children': ['423', '424']}, {'id': '423', 'type': 'identifier', 'children': [], 'value': 'form'}; {'id': '424', 'type': 'call', 'children': ['425', '426']}, {'id': '425', 'type': 'identifier', 'children': [], 'value': 'F'}; {'id': '426', 'type': 'argument_list', 'children': []}, {'id': '427', 'type': 'else_clause', 'children': ['428']}; {'id': '428', 'type': 'block', 'children': ['429']}, {'id': '429', 'type': 'expression_statement', 'children': ['430']}; {'id': '430', 'type': 'assignment', 'children': ['431', '432']}, {'id': '431', 'type': 'identifier', 'children': [], 'value': 'form'}; {'id': '432', 'type': 'call', 'children': ['433', '434']}, {'id': '433', 'type': 'identifier', 'children': [], 'value': 'F'}; {'id': '434', 'type': 'argument_list', 'children': ['435']}, {'id': '435', 'type': 'identifier', 'children': [], 'value': 'post'}; {'id': '436', 'type': 'return_statement', 'children': ['437']}, {'id': '437', 'type': 'identifier', 'children': [], 'value': 'form'}

def process(self, form, post): if not isinstance(form, FormMeta): raise TypeError('Given form is not a valid WTForm.') re_field_name = re.compile(r'\%([a-zA-Z0-9_]*)\%') class F(form): pass for field, data in post.iteritems(): if field in F(): continue else: if field in self._dyn_fields: field_cname = field current_set_number = None elif (field.split('_')[-1].isdigit() and field[:-(len(field.split('_')[-1]))-1] in self._dyn_fields.keys()): field_cname = field[:-(len(field.split('_')[-1]))-1] current_set_number = str(field.split('_')[-1]) else: continue validators = [] if 'validators' in self._dyn_fields[field_cname]: for validator in self._dyn_fields[field_cname]['validators']: args = [] kwargs = {} if 'args' in self._dyn_fields[field_cname]\ [validator.__name__]: if not current_set_number: args = self._dyn_fields[field_cname]\ [validator.__name__]['args'] else: for arg in self._dyn_fields[field_cname]\ [validator.__name__]['args']: try: arg = re_field_name.sub(r'\1'+'_'+current_set_number, arg) except: pass args.append(arg) if 'kwargs' in self._dyn_fields[field_cname]\ [validator.__name__]: if not current_set_number: kwargs = self._dyn_fields[field_cname]\ [validator.__name__]['kwargs'] else: for key, arg in self.iteritems(self._dyn_fields[field_cname]\ [validator.__name__]['kwargs']): try: arg = re_field_name.sub(r'\1'+'_'+current_set_number, arg) except: pass kwargs[key] = arg validators.append(validator(*args, **kwargs)) field_type = self._dyn_fields[field_cname]['type'] field_label = self._dyn_fields[field_cname]['label'] field_args = self._dyn_fields[field_cname]['args'] field_kwargs = self._dyn_fields[field_cname]['kwargs'] setattr(F, field, field_type(field_label, validators=validators, *field_args, **field_kwargs)) if self.flask_wtf: form = F() else: form = F(post) return form

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'distinct_values'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 't_old'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 't_new'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '19', '118']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '10', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'list', 'children': ['18'], 'value': "[' -- NOT IN check -- ']"}; {'id': '18', 'type': 'string', 'children': [], 'value': "' -- NOT IN check -- '"}, {'id': '19', 'type': 'for_statement', 'children': ['20', '21', '24']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'new_col'}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 't_new'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '24', 'type': 'block', 'children': ['25', '35']}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'dist_new'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 't_new'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'get_distinct_values_from_cols'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'list', 'children': ['34'], 'value': '[new_col]'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'new_col'}, {'id': '35', 'type': 'for_statement', 'children': ['36', '37', '40']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'old_col'}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 't_old'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'if_statement', 'children': ['42', '45']}; {'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': '=='}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'old_col'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'new_col'}, {'id': '45', 'type': 'block', 'children': ['46', '56', '72', '87', '103']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'dist_old'}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 't_old'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'get_distinct_values_from_cols'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'list', 'children': ['55'], 'value': '[old_col]'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'old_col'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'not_in_new'}, {'id': '59', 'type': 'list_comprehension', 'children': ['60', '61', '66']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '61', 'type': 'for_in_clause', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '63', 'type': 'subscript', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'dist_old'}, {'id': '65', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '66', 'type': 'if_clause', 'children': ['67']}, {'id': '67', 'type': 'comparison_operator', 'children': ['68', '69'], 'value': 'not'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'dist_new'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '72', 'type': 'if_statement', 'children': ['73', '76']}, {'id': '73', 'type': 'comparison_operator', 'children': ['74', '75'], 'value': '!='}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'not_in_new'}, {'id': '75', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'list', 'children': ['84', '85', '86'], 'value': "['Not in New', old_col, not_in_new]"}; {'id': '84', 'type': 'string', 'children': [], 'value': "'Not in New'"}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'old_col'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'not_in_new'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'not_in_old'}; {'id': '90', 'type': 'list_comprehension', 'children': ['91', '92', '97']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '92', 'type': 'for_in_clause', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '94', 'type': 'subscript', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'dist_new'}; {'id': '96', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '97', 'type': 'if_clause', 'children': ['98']}; {'id': '98', 'type': 'comparison_operator', 'children': ['99', '100'], 'value': 'not'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '100', 'type': 'subscript', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'dist_old'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '103', 'type': 'if_statement', 'children': ['104', '107']}; {'id': '104', 'type': 'comparison_operator', 'children': ['105', '106'], 'value': '!='}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'not_in_old'}; {'id': '106', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '107', 'type': 'block', 'children': ['108']}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'list', 'children': ['115', '116', '117'], 'value': "['Not in Old', new_col, not_in_old]"}, {'id': '115', 'type': 'string', 'children': [], 'value': "'Not in Old'"}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'new_col'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'not_in_old'}; {'id': '118', 'type': 'return_statement', 'children': ['119']}, {'id': '119', 'type': 'call', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}

def distinct_values(t_old, t_new): res = [] res.append([' -- NOT IN check -- ']) for new_col in t_new.header: dist_new = t_new.get_distinct_values_from_cols([new_col]) for old_col in t_old.header: if old_col == new_col: dist_old = t_old.get_distinct_values_from_cols([old_col]) not_in_new = [x for x in dist_old[0] if x not in dist_new[0]] if not_in_new != []: res.append(['Not in New', old_col, not_in_new]) not_in_old = [x for x in dist_new[0] if x not in dist_old[0]] if not_in_old != []: res.append(['Not in Old', new_col, not_in_old]) return sorted(res)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'most_similar_catchments'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'similarity_dist_function'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'records_limit'}, {'id': '9', 'type': 'integer', 'children': [], 'value': '500'}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'include_subject_catchment'}; {'id': '12', 'type': 'string', 'children': [], 'value': "'auto'"}, {'id': '13', 'type': 'block', 'children': ['14', '34', '111', '119', '185', '199', '211', '215', '219', '242']}; {'id': '14', 'type': 'if_statement', 'children': ['15', '21']}, {'id': '15', 'type': 'comparison_operator', 'children': ['16', '17'], 'value': 'not'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'include_subject_catchment'}, {'id': '17', 'type': 'list', 'children': ['18', '19', '20'], 'value': "['auto', 'force', 'exclude']"}; {'id': '18', 'type': 'string', 'children': [], 'value': "'auto'"}, {'id': '19', 'type': 'string', 'children': [], 'value': "'force'"}; {'id': '20', 'type': 'string', 'children': [], 'value': "'exclude'"}, {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'raise_statement', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'binary_operator', 'children': ['27', '33'], 'value': '+'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'string', 'children': [], 'value': '"Parameter `include_subject_catchment={}` invalid."'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'include_subject_catchment'}, {'id': '33', 'type': 'string', 'children': [], 'value': '"Must be one of `auto`, `force` or `exclude`."'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '37', 'type': 'parenthesized_expression', 'children': ['38'], 'value': '()'}; {'id': '38', 'type': 'call', 'children': ['39', '100']}, {'id': '39', 'type': 'attribute', 'children': ['40', '99']}; {'id': '40', 'type': 'call', 'children': ['41', '97']}, {'id': '41', 'type': 'attribute', 'children': ['42', '96']}; {'id': '42', 'type': 'call', 'children': ['43', '67']}, {'id': '43', 'type': 'attribute', 'children': ['44', '66']}; {'id': '44', 'type': 'call', 'children': ['45', '62']}, {'id': '45', 'type': 'attribute', 'children': ['46', '61']}; {'id': '46', 'type': 'call', 'children': ['47', '57']}, {'id': '47', 'type': 'attribute', 'children': ['48', '56']}; {'id': '48', 'type': 'call', 'children': ['49', '54']}, {'id': '49', 'type': 'attribute', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'db_session'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'Catchment'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'Catchment'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'descriptors'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'Catchment'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'amax_records'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '75', '78', '91']}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '72'], 'value': '!='}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'Catchment'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'Catchment'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'is_suitable_for_pooling'}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'or_'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '86']}, {'id': '81', 'type': 'comparison_operator', 'children': ['82', '85'], 'value': '<'}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'Descriptors'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'urbext2000'}, {'id': '85', 'type': 'float', 'children': [], 'value': '0.03'}; {'id': '86', 'type': 'comparison_operator', 'children': ['87', '90'], 'value': '=='}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'Descriptors'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'urbext2000'}; {'id': '90', 'type': 'None', 'children': []}, {'id': '91', 'type': 'comparison_operator', 'children': ['92', '95'], 'value': '=='}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'AmaxRecord'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'flag'}, {'id': '95', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'group_by'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'Catchment'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'having'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'comparison_operator', 'children': ['102', '110'], 'value': '>='}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'func'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'AmaxRecord'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'catchment_id'}; {'id': '110', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'catchments'}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '118', 'type': 'argument_list', 'children': []}, {'id': '119', 'type': 'if_statement', 'children': ['120', '123', '141']}; {'id': '120', 'type': 'comparison_operator', 'children': ['121', '122'], 'value': '=='}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'include_subject_catchment'}; {'id': '122', 'type': 'string', 'children': [], 'value': "'force'"}, {'id': '123', 'type': 'block', 'children': ['124']}; {'id': '124', 'type': 'if_statement', 'children': ['125', '133']}, {'id': '125', 'type': 'comparison_operator', 'children': ['126', '132'], 'value': '>='}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'amax_records'}; {'id': '132', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '133', 'type': 'block', 'children': ['134']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'catchments'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}, {'id': '141', 'type': 'elif_clause', 'children': ['142', '145']}; {'id': '142', 'type': 'comparison_operator', 'children': ['143', '144'], 'value': '=='}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'include_subject_catchment'}; {'id': '144', 'type': 'string', 'children': [], 'value': "'auto'"}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'if_statement', 'children': ['147', '177']}, {'id': '147', 'type': 'boolean_operator', 'children': ['148', '160', '161'], 'value': 'and'}; {'id': '148', 'type': 'boolean_operator', 'children': ['149', '157'], 'value': 'and'}, {'id': '149', 'type': 'comparison_operator', 'children': ['150', '156'], 'value': '>='}; {'id': '150', 'type': 'call', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '152', 'type': 'argument_list', 'children': ['153']}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'amax_records'}; {'id': '156', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'is_suitable_for_pooling'}; {'id': '160', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '161', 'type': 'parenthesized_expression', 'children': ['162'], 'value': '()'}; {'id': '162', 'type': 'boolean_operator', 'children': ['163', '170'], 'value': 'or'}, {'id': '163', 'type': 'comparison_operator', 'children': ['164', '169'], 'value': '<'}; {'id': '164', 'type': 'attribute', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'descriptors'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'urbext2000'}, {'id': '169', 'type': 'float', 'children': [], 'value': '0.03'}; {'id': '170', 'type': 'comparison_operator', 'children': ['171', '176'], 'value': 'is'}, {'id': '171', 'type': 'attribute', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'descriptors'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'urbext2000'}; {'id': '176', 'type': 'None', 'children': []}, {'id': '177', 'type': 'block', 'children': ['178']}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'call', 'children': ['180', '183']}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'catchments'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '183', 'type': 'argument_list', 'children': ['184']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}, {'id': '185', 'type': 'for_statement', 'children': ['186', '187', '188']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'catchment'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'catchments'}; {'id': '188', 'type': 'block', 'children': ['189']}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'assignment', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'catchment'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'similarity_dist'}; {'id': '194', 'type': 'call', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'similarity_dist_function'}; {'id': '196', 'type': 'argument_list', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'subject_catchment'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'catchment'}, {'id': '199', 'type': 'expression_statement', 'children': ['200']}; {'id': '200', 'type': 'call', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'catchments'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'keyword_argument', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '207', 'type': 'call', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'attrgetter'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'string', 'children': [], 'value': "'similarity_dist'"}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'amax_records_count'}; {'id': '214', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '215', 'type': 'expression_statement', 'children': ['216']}; {'id': '216', 'type': 'assignment', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'catchments_limited'}; {'id': '218', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '219', 'type': 'for_statement', 'children': ['220', '221', '222']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'catchment'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'catchments'}; {'id': '222', 'type': 'block', 'children': ['223', '230', '236']}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'call', 'children': ['225', '228']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'catchments_limited'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '228', 'type': 'argument_list', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'catchment'}; {'id': '230', 'type': 'expression_statement', 'children': ['231']}, {'id': '231', 'type': 'augmented_assignment', 'children': ['232', '233'], 'value': '+='}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'amax_records_count'}, {'id': '233', 'type': 'attribute', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'catchment'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'record_length'}; {'id': '236', 'type': 'if_statement', 'children': ['237', '240']}, {'id': '237', 'type': 'comparison_operator', 'children': ['238', '239'], 'value': '>='}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'amax_records_count'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'records_limit'}; {'id': '240', 'type': 'block', 'children': ['241']}, {'id': '241', 'type': 'break_statement', 'children': []}; {'id': '242', 'type': 'return_statement', 'children': ['243']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'catchments_limited'}

def most_similar_catchments(self, subject_catchment, similarity_dist_function, records_limit=500, include_subject_catchment='auto'): if include_subject_catchment not in ['auto', 'force', 'exclude']: raise ValueError("Parameter `include_subject_catchment={}` invalid.".format(include_subject_catchment) + "Must be one of `auto`, `force` or `exclude`.") query = (self.db_session.query(Catchment). join(Catchment.descriptors). join(Catchment.amax_records). filter(Catchment.id != subject_catchment.id, Catchment.is_suitable_for_pooling, or_(Descriptors.urbext2000 < 0.03, Descriptors.urbext2000 == None), AmaxRecord.flag == 0). group_by(Catchment). having(func.count(AmaxRecord.catchment_id) >= 10)) catchments = query.all() if include_subject_catchment == 'force': if len(subject_catchment.amax_records) >= 10: catchments.append(subject_catchment) elif include_subject_catchment == 'auto': if len(subject_catchment.amax_records) >= 10 and subject_catchment.is_suitable_for_pooling and \ (subject_catchment.descriptors.urbext2000 < 0.03 or subject_catchment.descriptors.urbext2000 is None): catchments.append(subject_catchment) for catchment in catchments: catchment.similarity_dist = similarity_dist_function(subject_catchment, catchment) catchments.sort(key=attrgetter('similarity_dist')) amax_records_count = 0 catchments_limited = [] for catchment in catchments: catchments_limited.append(catchment) amax_records_count += catchment.record_length if amax_records_count >= records_limit: break return catchments_limited

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'readSAM'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'SAMfile'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '57', '75', '97', '111', '117', '127', '139', '149', '205', '222']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '13']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '12'], 'value': '=='}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '12', 'type': 'True', 'children': []}, {'id': '13', 'type': 'block', 'children': ['14', '22', '26', '51']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'SAMfile'}, {'id': '21', 'type': 'string', 'children': [], 'value': '"r+"'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'head'}, {'id': '25', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '26', 'type': 'for_statement', 'children': ['27', '28', '33']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'readlines'}; {'id': '32', 'type': 'argument_list', 'children': []}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'if_statement', 'children': ['35', '40', '48']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '39'], 'value': '=='}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '39', 'type': 'string', 'children': [], 'value': '"@"'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'head'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '48', 'type': 'else_clause', 'children': ['49']}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'continue_statement', 'children': []}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'sam'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'pd'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'read_table'}; {'id': '64', 'type': 'argument_list', 'children': ['65', '66', '69', '72']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'SAMfile'}; {'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '68', 'type': 'string', 'children': [], 'value': '"this_gives_one_column"'}, {'id': '69', 'type': 'keyword_argument', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'comment'}, {'id': '71', 'type': 'string', 'children': [], 'value': '"@"'}; {'id': '72', 'type': 'keyword_argument', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '74', 'type': 'None', 'children': []}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'sam'}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'pd'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'DataFrame'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'call', 'children': ['84', '96']}; {'id': '84', 'type': 'attribute', 'children': ['85', '95']}, {'id': '85', 'type': 'call', 'children': ['86', '93']}; {'id': '86', 'type': 'attribute', 'children': ['87', '92']}, {'id': '87', 'type': 'attribute', 'children': ['88', '91']}; {'id': '88', 'type': 'subscript', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'sam'}; {'id': '90', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'string', 'children': [], 'value': '"\\t"'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'tolist'}; {'id': '96', 'type': 'argument_list', 'children': []}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'acols'}; {'id': '100', 'type': 'list', 'children': ['101', '102', '103', '104', '105', '106', '107', '108', '109', '110'], 'value': '[0,1,2,3,4,5,6,7,8,9]'}, {'id': '101', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '103', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '104', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '105', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '106', 'type': 'integer', 'children': [], 'value': '5'}, {'id': '107', 'type': 'integer', 'children': [], 'value': '6'}; {'id': '108', 'type': 'integer', 'children': [], 'value': '7'}, {'id': '109', 'type': 'integer', 'children': [], 'value': '8'}; {'id': '110', 'type': 'integer', 'children': [], 'value': '9'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'sam_'}; {'id': '114', 'type': 'subscript', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'sam'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'acols'}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'assignment', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'samcols'}; {'id': '120', 'type': 'call', 'children': ['121', '126']}, {'id': '121', 'type': 'attribute', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'sam'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'tolist'}; {'id': '126', 'type': 'argument_list', 'children': []}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'bcols'}; {'id': '130', 'type': 'list_comprehension', 'children': ['131', '132', '135']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '132', 'type': 'for_in_clause', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'samcols'}, {'id': '135', 'type': 'if_clause', 'children': ['136']}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '138'], 'value': 'not'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'acols'}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'assignment', 'children': ['141', '144']}, {'id': '141', 'type': 'subscript', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'sam_'}, {'id': '143', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '144', 'type': 'subscript', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'sam'}; {'id': '146', 'type': 'subscript', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'bcols'}; {'id': '148', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '149', 'type': 'if_statement', 'children': ['150', '156']}; {'id': '150', 'type': 'comparison_operator', 'children': ['151', '155'], 'value': '>'}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'bcols'}, {'id': '155', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '156', 'type': 'block', 'children': ['157']}, {'id': '157', 'type': 'for_statement', 'children': ['158', '159', '164']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '159', 'type': 'subscript', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'bcols'}, {'id': '161', 'type': 'slice', 'children': ['162', '163']}; {'id': '162', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '163', 'type': 'colon', 'children': []}; {'id': '164', 'type': 'block', 'children': ['165', '178', '191']}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '170']}, {'id': '167', 'type': 'subscript', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'sam_'}, {'id': '169', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '170', 'type': 'call', 'children': ['171', '176']}, {'id': '171', 'type': 'attribute', 'children': ['172', '175']}; {'id': '172', 'type': 'subscript', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'sam_'}; {'id': '174', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'astype'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'assignment', 'children': ['180', '183']}; {'id': '180', 'type': 'subscript', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'sam'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '183', 'type': 'call', 'children': ['184', '189']}; {'id': '184', 'type': 'attribute', 'children': ['185', '188']}, {'id': '185', 'type': 'subscript', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'sam'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'astype'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '196']}, {'id': '193', 'type': 'subscript', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'sam_'}, {'id': '195', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '196', 'type': 'binary_operator', 'children': ['197', '202'], 'value': '+'}, {'id': '197', 'type': 'binary_operator', 'children': ['198', '201'], 'value': '+'}; {'id': '198', 'type': 'subscript', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'sam_'}; {'id': '200', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '201', 'type': 'string', 'children': [], 'value': '"\\t"'}; {'id': '202', 'type': 'subscript', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'sam'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '205', 'type': 'expression_statement', 'children': ['206']}; {'id': '206', 'type': 'assignment', 'children': ['207', '210']}, {'id': '207', 'type': 'attribute', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'sam_'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '210', 'type': 'list', 'children': ['211', '212', '213', '214', '215', '216', '217', '218', '219', '220', '221'], 'value': "['QNAME','FLAG','RNAME','POS','MAPQ','CIGAR','RNEXT','PNEXT','TLEN','SEQ','QUAL']"}, {'id': '211', 'type': 'string', 'children': [], 'value': "'QNAME'"}; {'id': '212', 'type': 'string', 'children': [], 'value': "'FLAG'"}, {'id': '213', 'type': 'string', 'children': [], 'value': "'RNAME'"}; {'id': '214', 'type': 'string', 'children': [], 'value': "'POS'"}, {'id': '215', 'type': 'string', 'children': [], 'value': "'MAPQ'"}; {'id': '216', 'type': 'string', 'children': [], 'value': "'CIGAR'"}, {'id': '217', 'type': 'string', 'children': [], 'value': "'RNEXT'"}; {'id': '218', 'type': 'string', 'children': [], 'value': "'PNEXT'"}, {'id': '219', 'type': 'string', 'children': [], 'value': "'TLEN'"}; {'id': '220', 'type': 'string', 'children': [], 'value': "'SEQ'"}, {'id': '221', 'type': 'string', 'children': [], 'value': "'QUAL'"}; {'id': '222', 'type': 'if_statement', 'children': ['223', '226', '231']}, {'id': '223', 'type': 'comparison_operator', 'children': ['224', '225'], 'value': '=='}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '225', 'type': 'True', 'children': []}; {'id': '226', 'type': 'block', 'children': ['227']}, {'id': '227', 'type': 'return_statement', 'children': ['228']}; {'id': '228', 'type': 'expression_list', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'sam_'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'head'}, {'id': '231', 'type': 'else_clause', 'children': ['232']}; {'id': '232', 'type': 'block', 'children': ['233']}, {'id': '233', 'type': 'return_statement', 'children': ['234']}

def readSAM(SAMfile,header=False): if header==True: f=open(SAMfile,"r+") head=[] for line in f.readlines(): if line[0]=="@": head.append(line) else: continue f.close() sam=pd.read_table(SAMfile,sep="this_gives_one_column",comment="@",header=None) sam=pd.DataFrame(sam[0].str.split("\t").tolist()) acols=[0,1,2,3,4,5,6,7,8,9] sam_=sam[acols] samcols=sam.columns.tolist() bcols=[ s for s in samcols if s not in acols ] sam_[10]=sam[bcols[0]] if len(bcols) > 1: for c in bcols[1:]: sam_[10]=sam_[10].astype(str) sam[c]=sam[c].astype(str) sam_[10]=sam_[10]+"\t"+sam[c] sam_.columns=['QNAME','FLAG','RNAME','POS','MAPQ','CIGAR','RNEXT','PNEXT','TLEN','SEQ','QUAL'] if header==True: return sam_, head else: return sam_

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'SAMflags'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '25', '32', '47', '54', '69', '76', '91', '98', '113', '120', '135', '142', '157', '164', '179', '186', '201', '208', '223', '230', '245', '252', '267', '274']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'if_statement', 'children': ['11', '14', '19']}, {'id': '11', 'type': 'binary_operator', 'children': ['12', '13'], 'value': '&'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '13', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '14', 'type': 'block', 'children': ['15']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '18', 'type': 'string', 'children': [], 'value': '"1: Read paired"'}, {'id': '19', 'type': 'else_clause', 'children': ['20']}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '24', 'type': 'string', 'children': [], 'value': '"0: Read unpaired"'}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '36', '41']}, {'id': '33', 'type': 'binary_operator', 'children': ['34', '35'], 'value': '&'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '35', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '40', 'type': 'string', 'children': [], 'value': '"1: Read mapped in proper pair"'}, {'id': '41', 'type': 'else_clause', 'children': ['42']}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '46', 'type': 'string', 'children': [], 'value': '"0: Read not mapped in proper pair"'}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '54', 'type': 'if_statement', 'children': ['55', '58', '63']}, {'id': '55', 'type': 'binary_operator', 'children': ['56', '57'], 'value': '&'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '57', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '58', 'type': 'block', 'children': ['59']}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '62', 'type': 'string', 'children': [], 'value': '"1: Read unmapped"'}, {'id': '63', 'type': 'else_clause', 'children': ['64']}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '68', 'type': 'string', 'children': [], 'value': '"0: Read mapped"'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '76', 'type': 'if_statement', 'children': ['77', '80', '85']}, {'id': '77', 'type': 'binary_operator', 'children': ['78', '79'], 'value': '&'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '79', 'type': 'integer', 'children': [], 'value': '8'}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '84', 'type': 'string', 'children': [], 'value': '"1: Mate unmapped"'}, {'id': '85', 'type': 'else_clause', 'children': ['86']}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '90', 'type': 'string', 'children': [], 'value': '"0: Mate mapped"'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '98', 'type': 'if_statement', 'children': ['99', '102', '107']}, {'id': '99', 'type': 'binary_operator', 'children': ['100', '101'], 'value': '&'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '101', 'type': 'integer', 'children': [], 'value': '16'}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '106', 'type': 'string', 'children': [], 'value': '"1: Read reverse strand"'}, {'id': '107', 'type': 'else_clause', 'children': ['108']}; {'id': '108', 'type': 'block', 'children': ['109']}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '112', 'type': 'string', 'children': [], 'value': '"0: Read direct strand"'}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '120', 'type': 'if_statement', 'children': ['121', '124', '129']}, {'id': '121', 'type': 'binary_operator', 'children': ['122', '123'], 'value': '&'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '123', 'type': 'integer', 'children': [], 'value': '32'}; {'id': '124', 'type': 'block', 'children': ['125']}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'assignment', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '128', 'type': 'string', 'children': [], 'value': '"1: Mate reverse strand"'}, {'id': '129', 'type': 'else_clause', 'children': ['130']}; {'id': '130', 'type': 'block', 'children': ['131']}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'assignment', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '134', 'type': 'string', 'children': [], 'value': '"0: Mate direct strand"'}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '142', 'type': 'if_statement', 'children': ['143', '146', '151']}, {'id': '143', 'type': 'binary_operator', 'children': ['144', '145'], 'value': '&'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '145', 'type': 'integer', 'children': [], 'value': '64'}; {'id': '146', 'type': 'block', 'children': ['147']}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '150', 'type': 'string', 'children': [], 'value': '"1: First in pair"'}, {'id': '151', 'type': 'else_clause', 'children': ['152']}; {'id': '152', 'type': 'block', 'children': ['153']}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '156', 'type': 'string', 'children': [], 'value': '"0: Second in pair"'}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '164', 'type': 'if_statement', 'children': ['165', '168', '173']}, {'id': '165', 'type': 'binary_operator', 'children': ['166', '167'], 'value': '&'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '167', 'type': 'integer', 'children': [], 'value': '128'}; {'id': '168', 'type': 'block', 'children': ['169']}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'assignment', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '172', 'type': 'string', 'children': [], 'value': '"1: Second in pair"'}, {'id': '173', 'type': 'else_clause', 'children': ['174']}; {'id': '174', 'type': 'block', 'children': ['175']}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'assignment', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '178', 'type': 'string', 'children': [], 'value': '"0: First in pair"'}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '186', 'type': 'if_statement', 'children': ['187', '190', '195']}, {'id': '187', 'type': 'binary_operator', 'children': ['188', '189'], 'value': '&'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '189', 'type': 'integer', 'children': [], 'value': '256'}; {'id': '190', 'type': 'block', 'children': ['191']}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '194', 'type': 'string', 'children': [], 'value': '"1: Not primary alignment"'}, {'id': '195', 'type': 'else_clause', 'children': ['196']}; {'id': '196', 'type': 'block', 'children': ['197']}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '200', 'type': 'string', 'children': [], 'value': '"0: Primary alignment"'}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'call', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '206', 'type': 'argument_list', 'children': ['207']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '208', 'type': 'if_statement', 'children': ['209', '212', '217']}, {'id': '209', 'type': 'binary_operator', 'children': ['210', '211'], 'value': '&'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '211', 'type': 'integer', 'children': [], 'value': '512'}; {'id': '212', 'type': 'block', 'children': ['213']}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'assignment', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '216', 'type': 'string', 'children': [], 'value': '"1: Read fails platform/vendor quality checks"'}, {'id': '217', 'type': 'else_clause', 'children': ['218']}; {'id': '218', 'type': 'block', 'children': ['219']}, {'id': '219', 'type': 'expression_statement', 'children': ['220']}; {'id': '220', 'type': 'assignment', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '222', 'type': 'string', 'children': [], 'value': '"0: Read passes platform/vendor quality checks"'}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'call', 'children': ['225', '228']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '228', 'type': 'argument_list', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '230', 'type': 'if_statement', 'children': ['231', '234', '239']}, {'id': '231', 'type': 'binary_operator', 'children': ['232', '233'], 'value': '&'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '233', 'type': 'integer', 'children': [], 'value': '1024'}; {'id': '234', 'type': 'block', 'children': ['235']}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'assignment', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '238', 'type': 'string', 'children': [], 'value': '"1: Read is PCR or optical duplicate"'}, {'id': '239', 'type': 'else_clause', 'children': ['240']}; {'id': '240', 'type': 'block', 'children': ['241']}, {'id': '241', 'type': 'expression_statement', 'children': ['242']}; {'id': '242', 'type': 'assignment', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '244', 'type': 'string', 'children': [], 'value': '"0: Read is not PCR or optical duplicate"'}, {'id': '245', 'type': 'expression_statement', 'children': ['246']}; {'id': '246', 'type': 'call', 'children': ['247', '250']}, {'id': '247', 'type': 'attribute', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '250', 'type': 'argument_list', 'children': ['251']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '252', 'type': 'if_statement', 'children': ['253', '256', '261']}, {'id': '253', 'type': 'binary_operator', 'children': ['254', '255'], 'value': '&'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '255', 'type': 'integer', 'children': [], 'value': '2048'}; {'id': '256', 'type': 'block', 'children': ['257']}, {'id': '257', 'type': 'expression_statement', 'children': ['258']}; {'id': '258', 'type': 'assignment', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '260', 'type': 'string', 'children': [], 'value': '"1: Supplementary alignment"'}, {'id': '261', 'type': 'else_clause', 'children': ['262']}; {'id': '262', 'type': 'block', 'children': ['263']}, {'id': '263', 'type': 'expression_statement', 'children': ['264']}; {'id': '264', 'type': 'assignment', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '266', 'type': 'string', 'children': [], 'value': '"0: Not supplementary alignment"'}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'call', 'children': ['269', '272']}, {'id': '269', 'type': 'attribute', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '272', 'type': 'argument_list', 'children': ['273']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '274', 'type': 'return_statement', 'children': ['275']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'flags'}

def SAMflags(x): flags=[] if x & 1: l="1: Read paired" else: l="0: Read unpaired" flags.append(l) if x & 2 : l="1: Read mapped in proper pair" else: l="0: Read not mapped in proper pair" flags.append(l) if x & 4 : l="1: Read unmapped" else: l="0: Read mapped" flags.append(l) if x & 8 : l="1: Mate unmapped" else: l="0: Mate mapped" flags.append(l) if x & 16 : l="1: Read reverse strand" else: l="0: Read direct strand" flags.append(l) if x & 32 : l="1: Mate reverse strand" else: l="0: Mate direct strand" flags.append(l) if x & 64 : l="1: First in pair" else: l="0: Second in pair" flags.append(l) if x & 128 : l="1: Second in pair" else: l="0: First in pair" flags.append(l) if x & 256 : l="1: Not primary alignment" else: l="0: Primary alignment" flags.append(l) if x & 512 : l="1: Read fails platform/vendor quality checks" else: l="0: Read passes platform/vendor quality checks" flags.append(l) if x & 1024 : l="1: Read is PCR or optical duplicate" else: l="0: Read is not PCR or optical duplicate" flags.append(l) if x & 2048 : l="1: Supplementary alignment" else: l="0: Not supplementary alignment" flags.append(l) return flags

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '74']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'BLASTquery'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '11', '14', '17', '18', '21', '24', '25', '28', '31', '32', '35', '38', '39', '42', '43', '46', '49', '50', '53', '56', '57', '60', '63', '64', '67', '70', '71']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'database'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'program'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'format_type'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'expect'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'nucl_reward'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'default_parameter', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'nucl_penalty'}, {'id': '23', 'type': 'None', 'children': []}; {'id': '24', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '25', 'type': 'default_parameter', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'gapcosts'}, {'id': '27', 'type': 'None', 'children': []}; {'id': '28', 'type': 'default_parameter', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'matrix'}; {'id': '30', 'type': 'None', 'children': []}, {'id': '31', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '32', 'type': 'default_parameter', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'hitlist_size'}; {'id': '34', 'type': 'None', 'children': []}, {'id': '35', 'type': 'default_parameter', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'descriptions'}, {'id': '37', 'type': 'None', 'children': []}; {'id': '38', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '39', 'type': 'default_parameter', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'alignments'}, {'id': '41', 'type': 'None', 'children': []}; {'id': '42', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '43', 'type': 'default_parameter', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'ncbi_gi'}, {'id': '45', 'type': 'None', 'children': []}; {'id': '46', 'type': 'default_parameter', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'threshold'}; {'id': '48', 'type': 'None', 'children': []}, {'id': '49', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '50', 'type': 'default_parameter', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'word_size'}; {'id': '52', 'type': 'None', 'children': []}, {'id': '53', 'type': 'default_parameter', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'composition_based_statistics'}, {'id': '55', 'type': 'None', 'children': []}; {'id': '56', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '57', 'type': 'default_parameter', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'organism'}, {'id': '59', 'type': 'None', 'children': []}; {'id': '60', 'type': 'default_parameter', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'others'}; {'id': '62', 'type': 'None', 'children': []}, {'id': '63', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '64', 'type': 'default_parameter', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'num_threads'}; {'id': '66', 'type': 'None', 'children': []}, {'id': '67', 'type': 'default_parameter', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'baseURL'}, {'id': '69', 'type': 'string', 'children': [], 'value': '"http://blast.ncbi.nlm.nih.gov"'}; {'id': '70', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '71', 'type': 'default_parameter', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'verbose'}, {'id': '73', 'type': 'False', 'children': []}; {'id': '74', 'type': 'block', 'children': ['75', '116', '122', '147', '211', '222', '228', '244', '255', '266', '278', '311']}, {'id': '75', 'type': 'if_statement', 'children': ['76', '77', '110']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'organism'}, {'id': '77', 'type': 'block', 'children': ['78', '106']}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'organism'}, {'id': '81', 'type': 'call', 'children': ['82', '103']}; {'id': '82', 'type': 'attribute', 'children': ['83', '102']}, {'id': '83', 'type': 'call', 'children': ['84', '99']}; {'id': '84', 'type': 'attribute', 'children': ['85', '98']}, {'id': '85', 'type': 'call', 'children': ['86', '95']}; {'id': '86', 'type': 'attribute', 'children': ['87', '94']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'organism'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'replace'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '93']}; {'id': '92', 'type': 'string', 'children': [], 'value': '" "'}, {'id': '93', 'type': 'string', 'children': [], 'value': '"%20"'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'replace'}, {'id': '95', 'type': 'argument_list', 'children': ['96', '97']}; {'id': '96', 'type': 'string', 'children': [], 'value': '"("'}, {'id': '97', 'type': 'string', 'children': [], 'value': '"%28"'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'replace'}, {'id': '99', 'type': 'argument_list', 'children': ['100', '101']}; {'id': '100', 'type': 'string', 'children': [], 'value': '")"'}, {'id': '101', 'type': 'string', 'children': [], 'value': '"%29"'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'replace'}, {'id': '103', 'type': 'argument_list', 'children': ['104', '105']}; {'id': '104', 'type': 'string', 'children': [], 'value': '":"'}, {'id': '105', 'type': 'string', 'children': [], 'value': '"%3A"'}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'EQ_MENU'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'organism'}; {'id': '110', 'type': 'else_clause', 'children': ['111']}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'EQ_MENU'}, {'id': '115', 'type': 'None', 'children': []}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'URL'}, {'id': '119', 'type': 'binary_operator', 'children': ['120', '121'], 'value': '+'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'baseURL'}, {'id': '121', 'type': 'string', 'children': [], 'value': '"/Blast.cgi?"'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'URL'}, {'id': '125', 'type': 'binary_operator', 'children': ['126', '143'], 'value': '+'}; {'id': '126', 'type': 'binary_operator', 'children': ['127', '142'], 'value': '+'}, {'id': '127', 'type': 'binary_operator', 'children': ['128', '138'], 'value': '+'}; {'id': '128', 'type': 'binary_operator', 'children': ['129', '137'], 'value': '+'}, {'id': '129', 'type': 'binary_operator', 'children': ['130', '133'], 'value': '+'}; {'id': '130', 'type': 'binary_operator', 'children': ['131', '132'], 'value': '+'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'URL'}; {'id': '132', 'type': 'string', 'children': [], 'value': '"QUERY="'}, {'id': '133', 'type': 'call', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '137', 'type': 'string', 'children': [], 'value': '"&DATABASE="'}; {'id': '138', 'type': 'call', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'database'}; {'id': '142', 'type': 'string', 'children': [], 'value': '"&PROGRAM="'}, {'id': '143', 'type': 'call', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '145', 'type': 'argument_list', 'children': ['146']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'program'}, {'id': '147', 'type': 'for_statement', 'children': ['148', '151', '192']}; {'id': '148', 'type': 'pattern_list', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'o'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'varname'}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '153', 'type': 'argument_list', 'children': ['154', '174', '175']}; {'id': '154', 'type': 'list', 'children': ['155', '156', '157', '158', '159', '160', '161', '162', '163', '164', '165', '166', '167', '168', '169', '170', '171', '172', '173'], 'value': '[filter, format_type, expect, nucl_reward, nucl_penalty,\\\n gapcosts, matrix, hitlist_size, descriptions, alignments,\\\n ncbi_gi, threshold, word_size, composition_based_statistics,\\\n EQ_MENU, num_threads]'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'format_type'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'expect'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'nucl_reward'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'nucl_penalty'}; {'id': '160', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'gapcosts'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'matrix'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'hitlist_size'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'descriptions'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'alignments'}; {'id': '166', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'ncbi_gi'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'word_size'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'composition_based_statistics'}, {'id': '171', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'EQ_MENU'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'num_threads'}; {'id': '174', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '175', 'type': 'list', 'children': ['176', '177', '178', '179', '180', '181', '182', '183', '184', '185', '186', '187', '188', '189', '190', '191'], 'value': "['FILTER' , 'FORMAT_TYPE', 'EXPECT', 'NUCL_REWARD', 'NUCL_PENALTY',\\\n 'GAPCOSTS', 'MATRIX', 'HITLIST_SIZE', 'DESCRIPTIONS', 'ALIGNMENTS',\\\n 'NCBI_GI', 'THRESHOLD', 'WORD_SIZE', 'COMPOSITION_BASED_STATISTICS',\\\n 'EQ_MENU', 'NUM_THREADS']"}; {'id': '176', 'type': 'string', 'children': [], 'value': "'FILTER'"}, {'id': '177', 'type': 'string', 'children': [], 'value': "'FORMAT_TYPE'"}; {'id': '178', 'type': 'string', 'children': [], 'value': "'EXPECT'"}, {'id': '179', 'type': 'string', 'children': [], 'value': "'NUCL_REWARD'"}; {'id': '180', 'type': 'string', 'children': [], 'value': "'NUCL_PENALTY'"}, {'id': '181', 'type': 'string', 'children': [], 'value': "'GAPCOSTS'"}; {'id': '182', 'type': 'string', 'children': [], 'value': "'MATRIX'"}, {'id': '183', 'type': 'string', 'children': [], 'value': "'HITLIST_SIZE'"}; {'id': '184', 'type': 'string', 'children': [], 'value': "'DESCRIPTIONS'"}, {'id': '185', 'type': 'string', 'children': [], 'value': "'ALIGNMENTS'"}; {'id': '186', 'type': 'string', 'children': [], 'value': "'NCBI_GI'"}, {'id': '187', 'type': 'string', 'children': [], 'value': "'THRESHOLD'"}; {'id': '188', 'type': 'string', 'children': [], 'value': "'WORD_SIZE'"}, {'id': '189', 'type': 'string', 'children': [], 'value': "'COMPOSITION_BASED_STATISTICS'"}; {'id': '190', 'type': 'string', 'children': [], 'value': "'EQ_MENU'"}, {'id': '191', 'type': 'string', 'children': [], 'value': "'NUM_THREADS'"}; {'id': '192', 'type': 'block', 'children': ['193']}, {'id': '193', 'type': 'if_statement', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'o'}, {'id': '195', 'type': 'block', 'children': ['196']}; {'id': '196', 'type': 'expression_statement', 'children': ['197']}, {'id': '197', 'type': 'assignment', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'URL'}, {'id': '199', 'type': 'binary_operator', 'children': ['200', '207'], 'value': '+'}; {'id': '200', 'type': 'binary_operator', 'children': ['201', '206'], 'value': '+'}, {'id': '201', 'type': 'binary_operator', 'children': ['202', '205'], 'value': '+'}; {'id': '202', 'type': 'binary_operator', 'children': ['203', '204'], 'value': '+'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'URL'}; {'id': '204', 'type': 'string', 'children': [], 'value': '"&"'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'varname'}; {'id': '206', 'type': 'string', 'children': [], 'value': '"="'}, {'id': '207', 'type': 'call', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'o'}, {'id': '211', 'type': 'if_statement', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'others'}, {'id': '213', 'type': 'block', 'children': ['214']}; {'id': '214', 'type': 'expression_statement', 'children': ['215']}, {'id': '215', 'type': 'assignment', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'URL'}, {'id': '217', 'type': 'binary_operator', 'children': ['218', '221'], 'value': '+'}; {'id': '218', 'type': 'binary_operator', 'children': ['219', '220'], 'value': '+'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'URL'}; {'id': '220', 'type': 'string', 'children': [], 'value': '"&"'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'others'}; {'id': '222', 'type': 'expression_statement', 'children': ['223']}, {'id': '223', 'type': 'assignment', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'URL'}, {'id': '225', 'type': 'binary_operator', 'children': ['226', '227'], 'value': '+'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'URL'}, {'id': '227', 'type': 'string', 'children': [], 'value': '"&CMD=Put"'}; {'id': '228', 'type': 'if_statement', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'verbose'}; {'id': '230', 'type': 'block', 'children': ['231', '236']}, {'id': '231', 'type': 'expression_statement', 'children': ['232']}; {'id': '232', 'type': 'call', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '234', 'type': 'argument_list', 'children': ['235']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'URL'}; {'id': '236', 'type': 'expression_statement', 'children': ['237']}, {'id': '237', 'type': 'call', 'children': ['238', '243']}; {'id': '238', 'type': 'attribute', 'children': ['239', '242']}, {'id': '239', 'type': 'attribute', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'flush'}, {'id': '243', 'type': 'argument_list', 'children': []}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'assignment', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '247', 'type': 'call', 'children': ['248', '251']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'requests'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '251', 'type': 'argument_list', 'children': ['252']}; {'id': '252', 'type': 'keyword_argument', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'URL'}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'assignment', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '258', 'type': 'call', 'children': ['259', '264']}, {'id': '259', 'type': 'attribute', 'children': ['260', '263']}; {'id': '260', 'type': 'attribute', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'assignment', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'RID'}, {'id': '269', 'type': 'list_comprehension', 'children': ['270', '271', '274']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '271', 'type': 'for_in_clause', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '274', 'type': 'if_clause', 'children': ['275']}, {'id': '275', 'type': 'comparison_operator', 'children': ['276', '277'], 'value': 'in'}; {'id': '276', 'type': 'string', 'children': [], 'value': '"RID = "'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '278', 'type': 'if_statement', 'children': ['279', '285', '300']}, {'id': '279', 'type': 'comparison_operator', 'children': ['280', '284'], 'value': '>'}; {'id': '280', 'type': 'call', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '282', 'type': 'argument_list', 'children': ['283']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'RID'}; {'id': '284', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '285', 'type': 'block', 'children': ['286']}; {'id': '286', 'type': 'expression_statement', 'children': ['287']}, {'id': '287', 'type': 'assignment', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'RID'}, {'id': '289', 'type': 'subscript', 'children': ['290', '298']}; {'id': '290', 'type': 'call', 'children': ['291', '296']}, {'id': '291', 'type': 'attribute', 'children': ['292', '295']}; {'id': '292', 'type': 'subscript', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'RID'}; {'id': '294', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '296', 'type': 'argument_list', 'children': ['297']}, {'id': '297', 'type': 'string', 'children': [], 'value': '" "'}; {'id': '298', 'type': 'unary_operator', 'children': ['299'], 'value': '-'}, {'id': '299', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '300', 'type': 'else_clause', 'children': ['301']}, {'id': '301', 'type': 'block', 'children': ['302', '307']}; {'id': '302', 'type': 'expression_statement', 'children': ['303']}, {'id': '303', 'type': 'call', 'children': ['304', '305']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'string', 'children': [], 'value': '"Could not return an RID for this query."'}, {'id': '307', 'type': 'expression_statement', 'children': ['308']}; {'id': '308', 'type': 'assignment', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'RID'}; {'id': '310', 'type': 'None', 'children': []}, {'id': '311', 'type': 'return_statement', 'children': ['312']}

def BLASTquery(query,database,program,filter=None,\ format_type=None, expect=None,\ nucl_reward=None, nucl_penalty=None,\ gapcosts=None, matrix=None,\ hitlist_size=None, descriptions=None,\ alignments=None,\ ncbi_gi=None, threshold=None,\ word_size=None, composition_based_statistics=None,\ organism=None, others=None,\ num_threads=None, baseURL="http://blast.ncbi.nlm.nih.gov",\ verbose=False): if organism: organism=organism.replace(" ", "%20").replace("(", "%28").replace(")", "%29").replace(":", "%3A") EQ_MENU=organism else: EQ_MENU=None URL=baseURL+"/Blast.cgi?" URL=URL+"QUERY="+str(query)+"&DATABASE="+str(database)+"&PROGRAM="+str(program) for o,varname in zip([filter, format_type, expect, nucl_reward, nucl_penalty,\ gapcosts, matrix, hitlist_size, descriptions, alignments,\ ncbi_gi, threshold, word_size, composition_based_statistics,\ EQ_MENU, num_threads],\ ['FILTER' , 'FORMAT_TYPE', 'EXPECT', 'NUCL_REWARD', 'NUCL_PENALTY',\ 'GAPCOSTS', 'MATRIX', 'HITLIST_SIZE', 'DESCRIPTIONS', 'ALIGNMENTS',\ 'NCBI_GI', 'THRESHOLD', 'WORD_SIZE', 'COMPOSITION_BASED_STATISTICS',\ 'EQ_MENU', 'NUM_THREADS']): if o: URL=URL+"&"+ varname +"="+str(o) if others: URL=URL+"&"+others URL=URL+"&CMD=Put" if verbose: print(URL) sys.stdout.flush() response=requests.get(url = URL) r=response.content.split("\n") RID=[ s for s in r if "RID = " in s ] if len(RID) > 0: RID=RID[0].split(" ")[-1] else: print("Could not return an RID for this query.") RID=None return RID

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run_star'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'fastqs'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'star_options'}; {'id': '8', 'type': 'block', 'children': ['9', '17', '25', '44', '56', '68', '99', '111', '125', '141', '163', '224', '236', '291', '297', '324', '337', '350', '363']}, {'id': '9', 'type': 'assert_statement', 'children': ['10']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '14'], 'value': 'in'}, {'id': '11', 'type': 'subscript', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'star_options'}, {'id': '13', 'type': 'string', 'children': [], 'value': "'type'"}; {'id': '14', 'type': 'tuple', 'children': ['15', '16']}, {'id': '15', 'type': 'string', 'children': [], 'value': "'star'"}; {'id': '16', 'type': 'string', 'children': [], 'value': "'starlong'"}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'getcwd'}; {'id': '24', 'type': 'argument_list', 'children': []}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'input_files'}; {'id': '28', 'type': 'dictionary', 'children': ['29', '34', '39']}, {'id': '29', 'type': 'pair', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_1.fastq'"}, {'id': '31', 'type': 'subscript', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'fastqs'}, {'id': '33', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '34', 'type': 'pair', 'children': ['35', '36']}, {'id': '35', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_2.fastq'"}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'fastqs'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '39', 'type': 'pair', 'children': ['40', '41']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'star_index.tar.gz'"}, {'id': '41', 'type': 'subscript', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'star_options'}, {'id': '43', 'type': 'string', 'children': [], 'value': "'index'"}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'get_files_from_filestore'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '51', '52', '53']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'input_files'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'docker'}, {'id': '55', 'type': 'False', 'children': []}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'gz'}, {'id': '59', 'type': 'conditional_expression', 'children': ['60', '61', '67'], 'value': 'if'}; {'id': '60', 'type': 'string', 'children': [], 'value': "'.gz'"}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'is_gzipfile'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'subscript', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'input_files'}; {'id': '66', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_1.fastq'"}, {'id': '67', 'type': 'string', 'children': [], 'value': "''"}; {'id': '68', 'type': 'if_statement', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'gz'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'for_statement', 'children': ['72', '73', '76']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'read_file'}, {'id': '73', 'type': 'expression_list', 'children': ['74', '75']}; {'id': '74', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_1.fastq'"}, {'id': '75', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_2.fastq'"}; {'id': '76', 'type': 'block', 'children': ['77', '87']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'symlink'}; {'id': '82', 'type': 'argument_list', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'read_file'}; {'id': '84', 'type': 'binary_operator', 'children': ['85', '86'], 'value': '+'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'read_file'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'gz'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '94']}, {'id': '89', 'type': 'subscript', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '91', 'type': 'binary_operator', 'children': ['92', '93'], 'value': '+'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'read_file'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'gz'}; {'id': '94', 'type': 'binary_operator', 'children': ['95', '98'], 'value': '+'}, {'id': '95', 'type': 'subscript', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'read_file'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'gz'}, {'id': '99', 'type': 'expression_statement', 'children': ['100']}; {'id': '100', 'type': 'assignment', 'children': ['101', '104']}, {'id': '101', 'type': 'subscript', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '103', 'type': 'string', 'children': [], 'value': "'star_index'"}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'untargz'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '110']}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'star_index.tar.gz'"}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'star_fusion_idx'}; {'id': '114', 'type': 'call', 'children': ['115', '120']}, {'id': '115', 'type': 'attribute', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '120', 'type': 'argument_list', 'children': ['121', '124']}, {'id': '121', 'type': 'subscript', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '123', 'type': 'string', 'children': [], 'value': "'star_index'"}; {'id': '124', 'type': 'string', 'children': [], 'value': "'ref_genome.fa.star.idx'"}, {'id': '125', 'type': 'if_statement', 'children': ['126', '134']}; {'id': '126', 'type': 'call', 'children': ['127', '132']}, {'id': '127', 'type': 'attribute', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'star_fusion_idx'}; {'id': '134', 'type': 'block', 'children': ['135']}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'assignment', 'children': ['137', '140']}, {'id': '137', 'type': 'subscript', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '139', 'type': 'string', 'children': [], 'value': "'star_index'"}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'star_fusion_idx'}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'assignment', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'input_files'}; {'id': '144', 'type': 'dictionary_comprehension', 'children': ['145', '154']}, {'id': '145', 'type': 'pair', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '147', 'type': 'call', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'docker_path'}, {'id': '149', 'type': 'argument_list', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '151', 'type': 'keyword_argument', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '154', 'type': 'for_in_clause', 'children': ['155', '158']}, {'id': '155', 'type': 'pattern_list', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '162', 'type': 'argument_list', 'children': []}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'assignment', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '166', 'type': 'list', 'children': ['167', '168', '174', '175', '178', '179', '180', '181', '182', '183', '184', '185', '186', '187', '188', '189', '190', '191', '192', '193', '194', '195', '196', '197', '198', '199', '200', '201', '202', '203', '208', '213', '214', '215', '216', '217', '218', '219', '220', '221', '222', '223'], 'value': "['--runThreadN', str(star_options['n']),\n '--genomeDir', input_files['star_index'],\n '--twopassMode', 'Basic',\n '--outReadsUnmapped', 'None',\n '--chimSegmentMin', '12',\n '--chimJunctionOverhangMin', '12',\n '--alignSJDBoverhangMin', '10',\n '--alignMatesGapMax', '200000',\n '--alignIntronMax', '200000',\n '--chimSegmentReadGapMax', 'parameter', '3',\n '--alignSJstitchMismatchNmax', '5', '-1', '5', '5',\n '--outFileNamePrefix', 'rna',\n '--readFilesIn',\n input_files['rna_cutadapt_1.fastq' + gz],\n input_files['rna_cutadapt_2.fastq' + gz],\n '--outSAMattributes', 'NH', 'HI', 'AS', 'NM', 'MD',\n '--outSAMtype', 'BAM', 'Unsorted',\n '--quantMode', 'TranscriptomeSAM']"}, {'id': '167', 'type': 'string', 'children': [], 'value': "'--runThreadN'"}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'subscript', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'star_options'}, {'id': '173', 'type': 'string', 'children': [], 'value': "'n'"}; {'id': '174', 'type': 'string', 'children': [], 'value': "'--genomeDir'"}, {'id': '175', 'type': 'subscript', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '177', 'type': 'string', 'children': [], 'value': "'star_index'"}; {'id': '178', 'type': 'string', 'children': [], 'value': "'--twopassMode'"}, {'id': '179', 'type': 'string', 'children': [], 'value': "'Basic'"}; {'id': '180', 'type': 'string', 'children': [], 'value': "'--outReadsUnmapped'"}, {'id': '181', 'type': 'string', 'children': [], 'value': "'None'"}; {'id': '182', 'type': 'string', 'children': [], 'value': "'--chimSegmentMin'"}, {'id': '183', 'type': 'string', 'children': [], 'value': "'12'"}; {'id': '184', 'type': 'string', 'children': [], 'value': "'--chimJunctionOverhangMin'"}, {'id': '185', 'type': 'string', 'children': [], 'value': "'12'"}; {'id': '186', 'type': 'string', 'children': [], 'value': "'--alignSJDBoverhangMin'"}, {'id': '187', 'type': 'string', 'children': [], 'value': "'10'"}; {'id': '188', 'type': 'string', 'children': [], 'value': "'--alignMatesGapMax'"}, {'id': '189', 'type': 'string', 'children': [], 'value': "'200000'"}; {'id': '190', 'type': 'string', 'children': [], 'value': "'--alignIntronMax'"}, {'id': '191', 'type': 'string', 'children': [], 'value': "'200000'"}; {'id': '192', 'type': 'string', 'children': [], 'value': "'--chimSegmentReadGapMax'"}, {'id': '193', 'type': 'string', 'children': [], 'value': "'parameter'"}; {'id': '194', 'type': 'string', 'children': [], 'value': "'3'"}, {'id': '195', 'type': 'string', 'children': [], 'value': "'--alignSJstitchMismatchNmax'"}; {'id': '196', 'type': 'string', 'children': [], 'value': "'5'"}, {'id': '197', 'type': 'string', 'children': [], 'value': "'-1'"}; {'id': '198', 'type': 'string', 'children': [], 'value': "'5'"}, {'id': '199', 'type': 'string', 'children': [], 'value': "'5'"}; {'id': '200', 'type': 'string', 'children': [], 'value': "'--outFileNamePrefix'"}, {'id': '201', 'type': 'string', 'children': [], 'value': "'rna'"}; {'id': '202', 'type': 'string', 'children': [], 'value': "'--readFilesIn'"}, {'id': '203', 'type': 'subscript', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '205', 'type': 'binary_operator', 'children': ['206', '207'], 'value': '+'}; {'id': '206', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_1.fastq'"}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'gz'}; {'id': '208', 'type': 'subscript', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'input_files'}; {'id': '210', 'type': 'binary_operator', 'children': ['211', '212'], 'value': '+'}, {'id': '211', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_2.fastq'"}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'gz'}, {'id': '213', 'type': 'string', 'children': [], 'value': "'--outSAMattributes'"}; {'id': '214', 'type': 'string', 'children': [], 'value': "'NH'"}, {'id': '215', 'type': 'string', 'children': [], 'value': "'HI'"}; {'id': '216', 'type': 'string', 'children': [], 'value': "'AS'"}, {'id': '217', 'type': 'string', 'children': [], 'value': "'NM'"}; {'id': '218', 'type': 'string', 'children': [], 'value': "'MD'"}, {'id': '219', 'type': 'string', 'children': [], 'value': "'--outSAMtype'"}; {'id': '220', 'type': 'string', 'children': [], 'value': "'BAM'"}, {'id': '221', 'type': 'string', 'children': [], 'value': "'Unsorted'"}; {'id': '222', 'type': 'string', 'children': [], 'value': "'--quantMode'"}, {'id': '223', 'type': 'string', 'children': [], 'value': "'TranscriptomeSAM'"}; {'id': '224', 'type': 'if_statement', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'gz'}; {'id': '226', 'type': 'block', 'children': ['227']}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'call', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'extend'}; {'id': '232', 'type': 'argument_list', 'children': ['233']}, {'id': '233', 'type': 'list', 'children': ['234', '235'], 'value': "['--readFilesCommand', 'zcat']"}; {'id': '234', 'type': 'string', 'children': [], 'value': "'--readFilesCommand'"}, {'id': '235', 'type': 'string', 'children': [], 'value': "'zcat'"}; {'id': '236', 'type': 'if_statement', 'children': ['237', '242', '266']}, {'id': '237', 'type': 'comparison_operator', 'children': ['238', '241'], 'value': '=='}; {'id': '238', 'type': 'subscript', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'star_options'}; {'id': '240', 'type': 'string', 'children': [], 'value': "'type'"}, {'id': '241', 'type': 'string', 'children': [], 'value': "'star'"}; {'id': '242', 'type': 'block', 'children': ['243']}, {'id': '243', 'type': 'expression_statement', 'children': ['244']}; {'id': '244', 'type': 'call', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'docker_call'}; {'id': '246', 'type': 'argument_list', 'children': ['247', '250', '253', '256', '261']}, {'id': '247', 'type': 'keyword_argument', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'tool'}, {'id': '249', 'type': 'string', 'children': [], 'value': "'star'"}; {'id': '250', 'type': 'keyword_argument', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'tool_parameters'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '253', 'type': 'keyword_argument', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '256', 'type': 'keyword_argument', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'dockerhub'}; {'id': '258', 'type': 'subscript', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '260', 'type': 'string', 'children': [], 'value': "'dockerhub'"}, {'id': '261', 'type': 'keyword_argument', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'tool_version'}, {'id': '263', 'type': 'subscript', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'star_options'}, {'id': '265', 'type': 'string', 'children': [], 'value': "'version'"}; {'id': '266', 'type': 'else_clause', 'children': ['267']}, {'id': '267', 'type': 'block', 'children': ['268']}; {'id': '268', 'type': 'expression_statement', 'children': ['269']}, {'id': '269', 'type': 'call', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'docker_call'}, {'id': '271', 'type': 'argument_list', 'children': ['272', '275', '278', '281', '286']}; {'id': '272', 'type': 'keyword_argument', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'tool'}; {'id': '274', 'type': 'string', 'children': [], 'value': "'starlong'"}, {'id': '275', 'type': 'keyword_argument', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'tool_parameters'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '278', 'type': 'keyword_argument', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '281', 'type': 'keyword_argument', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'dockerhub'}, {'id': '283', 'type': 'subscript', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '285', 'type': 'string', 'children': [], 'value': "'dockerhub'"}; {'id': '286', 'type': 'keyword_argument', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'tool_version'}; {'id': '288', 'type': 'subscript', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'star_options'}; {'id': '290', 'type': 'string', 'children': [], 'value': "'version'"}, {'id': '291', 'type': 'expression_statement', 'children': ['292']}; {'id': '292', 'type': 'assignment', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'output_files'}; {'id': '294', 'type': 'call', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '296', 'type': 'argument_list', 'children': []}, {'id': '297', 'type': 'for_statement', 'children': ['298', '299', '303']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'output_file'}, {'id': '299', 'type': 'list', 'children': ['300', '301', '302'], 'value': "['rnaAligned.toTranscriptome.out.bam',\n 'rnaAligned.out.bam',\n 'rnaChimeric.out.junction']"}; {'id': '300', 'type': 'string', 'children': [], 'value': "'rnaAligned.toTranscriptome.out.bam'"}, {'id': '301', 'type': 'string', 'children': [], 'value': "'rnaAligned.out.bam'"}; {'id': '302', 'type': 'string', 'children': [], 'value': "'rnaChimeric.out.junction'"}, {'id': '303', 'type': 'block', 'children': ['304']}; {'id': '304', 'type': 'expression_statement', 'children': ['305']}, {'id': '305', 'type': 'assignment', 'children': ['306', '309']}; {'id': '306', 'type': 'subscript', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'output_files'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'output_file'}, {'id': '309', 'type': 'call', 'children': ['310', '315']}; {'id': '310', 'type': 'attribute', 'children': ['311', '314']}, {'id': '311', 'type': 'attribute', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}, {'id': '315', 'type': 'argument_list', 'children': ['316']}; {'id': '316', 'type': 'call', 'children': ['317', '320']}, {'id': '317', 'type': 'attribute', 'children': ['318', '319']}; {'id': '318', 'type': 'string', 'children': [], 'value': "'/'"}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '320', 'type': 'argument_list', 'children': ['321']}, {'id': '321', 'type': 'list', 'children': ['322', '323'], 'value': '[work_dir, output_file]'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'output_file'}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'call', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'export_results'}, {'id': '327', 'type': 'argument_list', 'children': ['328', '329', '332', '333', '334']}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '329', 'type': 'subscript', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'output_files'}, {'id': '331', 'type': 'string', 'children': [], 'value': "'rnaAligned.toTranscriptome.out.bam'"}; {'id': '332', 'type': 'string', 'children': [], 'value': "'rna_transcriptome.bam'"}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '334', 'type': 'keyword_argument', 'children': ['335', '336']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'subfolder'}; {'id': '336', 'type': 'string', 'children': [], 'value': "'alignments'"}, {'id': '337', 'type': 'expression_statement', 'children': ['338']}; {'id': '338', 'type': 'call', 'children': ['339', '340']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'export_results'}; {'id': '340', 'type': 'argument_list', 'children': ['341', '342', '345', '346', '347']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '342', 'type': 'subscript', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'output_files'}; {'id': '344', 'type': 'string', 'children': [], 'value': "'rnaChimeric.out.junction'"}, {'id': '345', 'type': 'string', 'children': [], 'value': "'rna_chimeric.junction'"}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '347', 'type': 'keyword_argument', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'subfolder'}, {'id': '349', 'type': 'string', 'children': [], 'value': "'mutations/fusions'"}; {'id': '350', 'type': 'expression_statement', 'children': ['351']}, {'id': '351', 'type': 'call', 'children': ['352', '357']}; {'id': '352', 'type': 'attribute', 'children': ['353', '356']}, {'id': '353', 'type': 'attribute', 'children': ['354', '355']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'logToMaster'}, {'id': '357', 'type': 'argument_list', 'children': ['358']}; {'id': '358', 'type': 'binary_operator', 'children': ['359', '360'], 'value': '%'}, {'id': '359', 'type': 'string', 'children': [], 'value': "'Ran STAR on %s successfully'"}; {'id': '360', 'type': 'subscript', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '362', 'type': 'string', 'children': [], 'value': "'patient'"}, {'id': '363', 'type': 'return_statement', 'children': ['364']}

def run_star(job, fastqs, univ_options, star_options): assert star_options['type'] in ('star', 'starlong') work_dir = os.getcwd() input_files = { 'rna_cutadapt_1.fastq': fastqs[0], 'rna_cutadapt_2.fastq': fastqs[1], 'star_index.tar.gz': star_options['index']} input_files = get_files_from_filestore(job, input_files, work_dir, docker=False) gz = '.gz' if is_gzipfile(input_files['rna_cutadapt_1.fastq']) else '' if gz: for read_file in 'rna_cutadapt_1.fastq', 'rna_cutadapt_2.fastq': os.symlink(read_file, read_file + gz) input_files[read_file + gz] = input_files[read_file] + gz input_files['star_index'] = untargz(input_files['star_index.tar.gz'], work_dir) star_fusion_idx = os.path.join(input_files['star_index'], 'ref_genome.fa.star.idx') if os.path.exists(star_fusion_idx): input_files['star_index'] = star_fusion_idx input_files = {key: docker_path(path, work_dir=work_dir) for key, path in input_files.items()} parameters = ['--runThreadN', str(star_options['n']), '--genomeDir', input_files['star_index'], '--twopassMode', 'Basic', '--outReadsUnmapped', 'None', '--chimSegmentMin', '12', '--chimJunctionOverhangMin', '12', '--alignSJDBoverhangMin', '10', '--alignMatesGapMax', '200000', '--alignIntronMax', '200000', '--chimSegmentReadGapMax', 'parameter', '3', '--alignSJstitchMismatchNmax', '5', '-1', '5', '5', '--outFileNamePrefix', 'rna', '--readFilesIn', input_files['rna_cutadapt_1.fastq' + gz], input_files['rna_cutadapt_2.fastq' + gz], '--outSAMattributes', 'NH', 'HI', 'AS', 'NM', 'MD', '--outSAMtype', 'BAM', 'Unsorted', '--quantMode', 'TranscriptomeSAM'] if gz: parameters.extend(['--readFilesCommand', 'zcat']) if star_options['type'] == 'star': docker_call(tool='star', tool_parameters=parameters, work_dir=work_dir, dockerhub=univ_options['dockerhub'], tool_version=star_options['version']) else: docker_call(tool='starlong', tool_parameters=parameters, work_dir=work_dir, dockerhub=univ_options['dockerhub'], tool_version=star_options['version']) output_files = defaultdict() for output_file in ['rnaAligned.toTranscriptome.out.bam', 'rnaAligned.out.bam', 'rnaChimeric.out.junction']: output_files[output_file] = job.fileStore.writeGlobalFile('/'.join([work_dir, output_file])) export_results(job, output_files['rnaAligned.toTranscriptome.out.bam'], 'rna_transcriptome.bam', univ_options, subfolder='alignments') export_results(job, output_files['rnaChimeric.out.junction'], 'rna_chimeric.junction', univ_options, subfolder='mutations/fusions') job.fileStore.logToMaster('Ran STAR on %s successfully' % univ_options['patient']) return output_files

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{'id': '16', 'type': 'subscript', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'star_options'}; {'id': '18', 'type': 'string', 'children': [], 'value': "'n'"}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28', '31', '32', '33', '38']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'sort_bamfile'}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'star_bams'}; {'id': '30', 'type': 'string', 'children': [], 'value': "'rnaAligned.out.bam'"}, {'id': '31', 'type': 'string', 'children': [], 'value': "'rna'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'samtools_options'}, {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'star_options'}, {'id': '37', 'type': 'string', 'children': [], 'value': "'samtools'"}; {'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'disk'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'sort_disk'}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'star_bams'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'rnaAligned.out.bam'"}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '56', '61', '62', '63', '68', '71']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'index_bamfile'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '60', 'type': 'argument_list', 'children': []}, {'id': '61', 'type': 'string', 'children': [], 'value': "'rna'"}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '63', 'type': 'keyword_argument', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'samtools_options'}, {'id': '65', 'type': 'subscript', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'star_options'}, {'id': '67', 'type': 'string', 'children': [], 'value': "'samtools'"}; {'id': '68', 'type': 'keyword_argument', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'sample_info'}; {'id': '70', 'type': 'string', 'children': [], 'value': "'genome_sorted'"}, {'id': '71', 'type': 'keyword_argument', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'index_disk'}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '81', 'type': 'argument_list', 'children': []}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'addChild'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'addChild'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '96', 'type': 'return_statement', 'children': ['97']}, {'id': '97', 'type': 'dictionary', 'children': ['98', '105', '110']}; {'id': '98', 'type': 'pair', 'children': ['99', '100']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'rna_genome'"}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '104', 'type': 'argument_list', 'children': []}, {'id': '105', 'type': 'pair', 'children': ['106', '107']}; {'id': '106', 'type': 'string', 'children': [], 'value': "'rna_transcriptome.bam'"}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'star_bams'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'rnaAligned.toTranscriptome.out.bam'"}; {'id': '110', 'type': 'pair', 'children': ['111', '112']}, {'id': '111', 'type': 'string', 'children': [], 'value': "'rnaChimeric.out.junction'"}; {'id': '112', 'type': 'subscript', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'star_bams'}

def sort_and_index_star(job, star_bams, univ_options, star_options): star_options['samtools']['n'] = star_options['n'] sort = job.wrapJobFn(sort_bamfile, star_bams['rnaAligned.out.bam'], 'rna', univ_options, samtools_options=star_options['samtools'], disk=PromisedRequirement(sort_disk, star_bams['rnaAligned.out.bam'])) index = job.wrapJobFn(index_bamfile, sort.rv(), 'rna', univ_options, samtools_options=star_options['samtools'], sample_info='genome_sorted', disk=PromisedRequirement(index_disk, sort.rv())) job.addChild(sort) sort.addChild(index) return {'rna_genome': index.rv(), 'rna_transcriptome.bam': star_bams['rnaAligned.toTranscriptome.out.bam'], 'rnaChimeric.out.junction': star_bams['rnaChimeric.out.junction']}

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{'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'IsNot'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'subscript', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'stack'}, {'id': '117', 'type': 'unary_operator', 'children': ['118'], 'value': '-'}; {'id': '118', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '119', 'type': 'continue_statement', 'children': []}; {'id': '120', 'type': 'if_statement', 'children': ['121', '127']}, {'id': '121', 'type': 'comparison_operator', 'children': ['122', '126'], 'value': '<'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '126', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '127', 'type': 'block', 'children': ['128']}; {'id': '128', 'type': 'raise_statement', 'children': ['129']}, {'id': '129', 'type': 'call', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'string', 'children': [], 'value': "'Unable to build a valid expression. Not enough operands available.'"}, {'id': '133', 'type': 'if_statement', 'children': ['134', '139', '155']}; {'id': '134', 'type': 'comparison_operator', 'children': ['135', '136'], 'value': '=='}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'OPERATOR'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'OR'}, {'id': '139', 'type': 'block', 'children': ['140']}; {'id': '140', 'type': 'expression_statement', 'children': ['141']}, {'id': '141', 'type': 'assignment', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'matcher'}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'hc'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'any_of'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'list_splat', 'children': ['149']}, {'id': '149', 'type': 'subscript', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'stack'}, {'id': '151', 'type': 'slice', 'children': ['152', '154']}; {'id': '152', 'type': 'unary_operator', 'children': ['153'], 'value': '-'}, {'id': '153', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '154', 'type': 'colon', 'children': []}, {'id': '155', 'type': 'else_clause', 'children': ['156']}; {'id': '156', 'type': 'block', 'children': ['157']}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'matcher'}; {'id': '160', 'type': 'call', 'children': ['161', '164']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'hc'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'all_of'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'list_splat', 'children': ['166']}; {'id': '166', 'type': 'subscript', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '168', 'type': 'slice', 'children': ['169', '171']}, {'id': '169', 'type': 'unary_operator', 'children': ['170'], 'value': '-'}; {'id': '170', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '171', 'type': 'colon', 'children': []}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'assignment', 'children': ['174', '180']}; {'id': '174', 'type': 'subscript', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '176', 'type': 'slice', 'children': ['177', '179']}, {'id': '177', 'type': 'unary_operator', 'children': ['178'], 'value': '-'}; {'id': '178', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '179', 'type': 'colon', 'children': []}; {'id': '180', 'type': 'list', 'children': ['181'], 'value': '[matcher]'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'matcher'}; {'id': '182', 'type': 'else_clause', 'children': ['183']}, {'id': '183', 'type': 'block', 'children': ['184']}; {'id': '184', 'type': 'expression_statement', 'children': ['185']}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'token'}, {'id': '191', 'type': 'if_statement', 'children': ['192', '198']}; {'id': '192', 'type': 'comparison_operator', 'children': ['193', '197'], 'value': '!='}, {'id': '193', 'type': 'call', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'stack'}, {'id': '197', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '198', 'type': 'block', 'children': ['199']}, {'id': '199', 'type': 'raise_statement', 'children': ['200']}; {'id': '200', 'type': 'call', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '202', 'type': 'argument_list', 'children': ['203']}, {'id': '203', 'type': 'string', 'children': [], 'value': "'Unable to build a valid expression. The RPN stack should have just one item.'"}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'assignment', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'matcher'}, {'id': '207', 'type': 'call', 'children': ['208', '211']}; {'id': '208', 'type': 'attribute', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '211', 'type': 'argument_list', 'children': []}; {'id': '212', 'type': 'if_statement', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '216', 'type': 'block', 'children': ['217']}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'assignment', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'matcher'}; {'id': '220', 'type': 'call', 'children': ['221', '224']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'hc'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'described_as'}; {'id': '224', 'type': 'argument_list', 'children': ['225', '228']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'matcher'}, {'id': '229', 'type': 'return_statement', 'children': ['230']}

def evaluate(self): ops = [] rpn = [] for token in self.expr: if isinstance(token, int): while len(ops) and token <= ops[-1]: rpn.append(ops.pop()) ops.append(token) else: rpn.append(token) while len(ops): rpn.append(ops.pop()) stack = [] for token in rpn: if isinstance(token, int): if token == OPERATOR.NOT: stack[-1] = IsNot(stack[-1]) continue if len(stack) < 2: raise RuntimeError('Unable to build a valid expression. Not enough operands available.') if token == OPERATOR.OR: matcher = hc.any_of(*stack[-2:]) else: matcher = hc.all_of(*stack[-2:]) stack[-2:] = [matcher] else: stack.append(token) if len(stack) != 1: raise RuntimeError('Unable to build a valid expression. The RPN stack should have just one item.') matcher = stack.pop() if self.description: matcher = hc.described_as(self.description, matcher) return matcher

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_ensure_patient_group_is_ok'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'patient_object'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'patient_name'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '16', '29', '36', '70']}, {'id': '9', 'type': 'import_from_statement', 'children': ['10', '14']}; {'id': '10', 'type': 'dotted_name', 'children': ['11', '12', '13']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'protect'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'addons'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'common'}; {'id': '14', 'type': 'dotted_name', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'TCGAToGTEx'}; {'id': '16', 'type': 'assert_statement', 'children': ['17', '24']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'patient_object'}, {'id': '21', 'type': 'tuple', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '24', 'type': 'binary_operator', 'children': ['25', '26'], 'value': '%'}, {'id': '25', 'type': 'string', 'children': [], 'value': "'%s,%s'"}; {'id': '26', 'type': 'tuple', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'patient_object'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'patient_name'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'test_set'}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'patient_object'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '40', '51']}, {'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': 'not'}; {'id': '38', 'type': 'string', 'children': [], 'value': "'tumor_type'"}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'patient_object'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'raise_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'binary_operator', 'children': ['46', '50'], 'value': '+'}; {'id': '46', 'type': 'parenthesized_expression', 'children': ['47'], 'value': '()'}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '%'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'The patient entry for sample %s '"}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'patient_name'}; {'id': '50', 'type': 'string', 'children': [], 'value': "'does not contain a Tumor type.'"}, {'id': '51', 'type': 'elif_clause', 'children': ['52', '57']}; {'id': '52', 'type': 'comparison_operator', 'children': ['53', '56'], 'value': 'not'}, {'id': '53', 'type': 'subscript', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'patient_object'}, {'id': '55', 'type': 'string', 'children': [], 'value': "'tumor_type'"}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'TCGAToGTEx'}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'raise_statement', 'children': ['59']}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'binary_operator', 'children': ['63', '67'], 'value': '+'}, {'id': '63', 'type': 'parenthesized_expression', 'children': ['64'], 'value': '()'}; {'id': '64', 'type': 'binary_operator', 'children': ['65', '66'], 'value': '%'}, {'id': '65', 'type': 'string', 'children': [], 'value': "'The patient entry for sample %s '"}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'patient_name'}, {'id': '67', 'type': 'concatenated_string', 'children': ['68', '69']}; {'id': '68', 'type': 'string', 'children': [], 'value': "'does contains an invalid Tumor type. Please use one of the '"}, {'id': '69', 'type': 'string', 'children': [], 'value': "'valid TCGA tumor types.'"}; {'id': '70', 'type': 'if_statement', 'children': ['71', '80', '82']}, {'id': '71', 'type': 'call', 'children': ['72', '78']}; {'id': '72', 'type': 'attribute', 'children': ['73', '77']}, {'id': '73', 'type': 'set', 'children': ['74', '75', '76']}; {'id': '74', 'type': 'string', 'children': [], 'value': "'tumor_dna_fastq_1'"}, {'id': '75', 'type': 'string', 'children': [], 'value': "'normal_dna_fastq_1'"}; {'id': '76', 'type': 'string', 'children': [], 'value': "'tumor_rna_fastq_1'"}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'issubset'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'test_set'}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'pass_statement', 'children': []}; {'id': '82', 'type': 'else_clause', 'children': ['83']}, {'id': '83', 'type': 'block', 'children': ['84', '101', '156', '196']}; {'id': '84', 'type': 'if_statement', 'children': ['85', '88']}, {'id': '85', 'type': 'comparison_operator', 'children': ['86', '87'], 'value': 'not'}; {'id': '86', 'type': 'string', 'children': [], 'value': "'hla_haplotype_files'"}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'test_set'}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'raise_statement', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'binary_operator', 'children': ['94', '98'], 'value': '+'}; {'id': '94', 'type': 'parenthesized_expression', 'children': ['95'], 'value': '()'}, {'id': '95', 'type': 'binary_operator', 'children': ['96', '97'], 'value': '%'}; {'id': '96', 'type': 'string', 'children': [], 'value': "'The patient entry for sample %s '"}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'patient_name'}; {'id': '98', 'type': 'concatenated_string', 'children': ['99', '100']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'does not contain a hla_haplotype_files entry.\\nCannot haplotype '"}; {'id': '100', 'type': 'string', 'children': [], 'value': "'patient if all the input sequence files are not fastqs.'"}, {'id': '101', 'type': 'if_statement', 'children': ['102', '142']}; {'id': '102', 'type': 'parenthesized_expression', 'children': ['103'], 'value': '()'}, {'id': '103', 'type': 'boolean_operator', 'children': ['104', '134'], 'value': 'and'}; {'id': '104', 'type': 'parenthesized_expression', 'children': ['105'], 'value': '()'}, {'id': '105', 'type': 'boolean_operator', 'children': ['106', '120'], 'value': 'or'}; {'id': '106', 'type': 'comparison_operator', 'children': ['107', '118'], 'value': '=='}, {'id': '107', 'type': 'set_comprehension', 'children': ['108', '115']}; {'id': '108', 'type': 'call', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'search'}; {'id': '112', 'type': 'argument_list', 'children': ['113', '114']}, {'id': '113', 'type': 'string', 'children': [], 'value': "'tumor_dna_((bam)|(fastq_1)).*'"}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '115', 'type': 'for_in_clause', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'test_set'}; {'id': '118', 'type': 'set', 'children': ['119']}, {'id': '119', 'type': 'None', 'children': []}; {'id': '120', 'type': 'comparison_operator', 'children': ['121', '132'], 'value': '=='}, {'id': '121', 'type': 'set_comprehension', 'children': ['122', '129']}; {'id': '122', 'type': 'call', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'search'}; {'id': '126', 'type': 'argument_list', 'children': ['127', '128']}, {'id': '127', 'type': 'string', 'children': [], 'value': "'normal_dna_((bam)|(fastq_1)).*'"}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '129', 'type': 'for_in_clause', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'test_set'}; {'id': '132', 'type': 'set', 'children': ['133']}, {'id': '133', 'type': 'None', 'children': []}; {'id': '134', 'type': 'parenthesized_expression', 'children': ['135'], 'value': '()'}, {'id': '135', 'type': 'boolean_operator', 'children': ['136', '139'], 'value': 'and'}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '138'], 'value': 'not'}, {'id': '137', 'type': 'string', 'children': [], 'value': "'mutation_vcf'"}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'test_set'}, {'id': '139', 'type': 'comparison_operator', 'children': ['140', '141'], 'value': 'not'}; {'id': '140', 'type': 'string', 'children': [], 'value': "'fusion_bedpe'"}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'test_set'}; {'id': '142', 'type': 'block', 'children': ['143']}, {'id': '143', 'type': 'raise_statement', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}; {'id': '146', 'type': 'argument_list', 'children': ['147']}, {'id': '147', 'type': 'binary_operator', 'children': ['148', '152'], 'value': '+'}; {'id': '148', 'type': 'parenthesized_expression', 'children': ['149'], 'value': '()'}, {'id': '149', 'type': 'binary_operator', 'children': ['150', '151'], 'value': '%'}; {'id': '150', 'type': 'string', 'children': [], 'value': "'The patient entry for sample %s '"}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'patient_name'}; {'id': '152', 'type': 'concatenated_string', 'children': ['153', '154', '155']}, {'id': '153', 'type': 'string', 'children': [], 'value': "'does not contain a mutation_vcf or fusion_bedpe entry. If both '"}; {'id': '154', 'type': 'string', 'children': [], 'value': "'tumor and normal DNA sequences (fastqs or bam) are not provided, '"}, {'id': '155', 'type': 'string', 'children': [], 'value': "'a pre-computed vcf and/or bedpe must be provided.'"}; {'id': '156', 'type': 'if_statement', 'children': ['157', '171']}, {'id': '157', 'type': 'comparison_operator', 'children': ['158', '169'], 'value': '=='}; {'id': '158', 'type': 'set_comprehension', 'children': ['159', '166']}, {'id': '159', 'type': 'call', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'search'}, {'id': '163', 'type': 'argument_list', 'children': ['164', '165']}; {'id': '164', 'type': 'string', 'children': [], 'value': "'tumor_rna_((bam)|(fastq_1)).*'"}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '166', 'type': 'for_in_clause', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'test_set'}, {'id': '169', 'type': 'set', 'children': ['170']}; {'id': '170', 'type': 'None', 'children': []}, {'id': '171', 'type': 'block', 'children': ['172']}; {'id': '172', 'type': 'if_statement', 'children': ['173', '180', '182']}, {'id': '173', 'type': 'boolean_operator', 'children': ['174', '177'], 'value': 'and'}; {'id': '174', 'type': 'comparison_operator', 'children': ['175', '176'], 'value': 'not'}, {'id': '175', 'type': 'string', 'children': [], 'value': "'mutation_vcf'"}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'test_set'}, {'id': '177', 'type': 'comparison_operator', 'children': ['178', '179'], 'value': 'in'}; {'id': '178', 'type': 'string', 'children': [], 'value': "'fusion_bedpe'"}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'test_set'}; {'id': '180', 'type': 'block', 'children': ['181']}, {'id': '181', 'type': 'pass_statement', 'children': []}; {'id': '182', 'type': 'else_clause', 'children': ['183']}, {'id': '183', 'type': 'block', 'children': ['184']}; {'id': '184', 'type': 'raise_statement', 'children': ['185']}, {'id': '185', 'type': 'call', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'binary_operator', 'children': ['189', '193'], 'value': '+'}, {'id': '189', 'type': 'parenthesized_expression', 'children': ['190'], 'value': '()'}; {'id': '190', 'type': 'binary_operator', 'children': ['191', '192'], 'value': '%'}, {'id': '191', 'type': 'string', 'children': [], 'value': "'The patient entry for sample %s '"}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'patient_name'}, {'id': '193', 'type': 'concatenated_string', 'children': ['194', '195']}; {'id': '194', 'type': 'string', 'children': [], 'value': "'does not contain a tumor rna sequence data entry. We require '"}, {'id': '195', 'type': 'string', 'children': [], 'value': "'either tumor_rna_fastq_1 or tumor_rna_bam.'"}; {'id': '196', 'type': 'if_statement', 'children': ['197', '204']}, {'id': '197', 'type': 'boolean_operator', 'children': ['198', '201'], 'value': 'and'}; {'id': '198', 'type': 'comparison_operator', 'children': ['199', '200'], 'value': 'in'}, {'id': '199', 'type': 'string', 'children': [], 'value': "'tumor_rna_bam'"}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'test_set'}, {'id': '201', 'type': 'comparison_operator', 'children': ['202', '203'], 'value': 'not'}; {'id': '202', 'type': 'string', 'children': [], 'value': "'tumor_rna_transcriptome_bam'"}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'test_set'}; {'id': '204', 'type': 'block', 'children': ['205']}, {'id': '205', 'type': 'if_statement', 'children': ['206', '209']}; {'id': '206', 'type': 'comparison_operator', 'children': ['207', '208'], 'value': 'not'}, {'id': '207', 'type': 'string', 'children': [], 'value': "'expression_files'"}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'test_set'}, {'id': '209', 'type': 'block', 'children': ['210']}; {'id': '210', 'type': 'raise_statement', 'children': ['211']}, {'id': '211', 'type': 'call', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}, {'id': '213', 'type': 'argument_list', 'children': ['214']}; {'id': '214', 'type': 'parenthesized_expression', 'children': ['215'], 'value': '()'}, {'id': '215', 'type': 'binary_operator', 'children': ['216', '219'], 'value': '+'}; {'id': '216', 'type': 'binary_operator', 'children': ['217', '218'], 'value': '%'}, {'id': '217', 'type': 'string', 'children': [], 'value': "'The patient entry for sample %s '"}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'patient_name'}, {'id': '219', 'type': 'concatenated_string', 'children': ['220', '221', '222', '223', '224']}; {'id': '220', 'type': 'string', 'children': [], 'value': "'was provided a tumor rna bam with sequences mapped to the '"}, {'id': '221', 'type': 'string', 'children': [], 'value': "'genome but was not provided a matching rna bam for the '"}; {'id': '222', 'type': 'string', 'children': [], 'value': "'transcriptome or a tar containing expression values. '"}, {'id': '223', 'type': 'string', 'children': [], 'value': "'We require either a matching transcriptome bam to estimate'"}

def _ensure_patient_group_is_ok(patient_object, patient_name=None): from protect.addons.common import TCGAToGTEx assert isinstance(patient_object, (set, dict)), '%s,%s' % (patient_object, patient_name) test_set = set(patient_object) if 'tumor_type' not in patient_object: raise ParameterError(('The patient entry for sample %s ' % patient_name) + 'does not contain a Tumor type.') elif patient_object['tumor_type'] not in TCGAToGTEx: raise ParameterError(('The patient entry for sample %s ' % patient_name) + 'does contains an invalid Tumor type. Please use one of the ' 'valid TCGA tumor types.') if {'tumor_dna_fastq_1', 'normal_dna_fastq_1', 'tumor_rna_fastq_1'}.issubset(test_set): pass else: if 'hla_haplotype_files' not in test_set: raise ParameterError(('The patient entry for sample %s ' % patient_name) + 'does not contain a hla_haplotype_files entry.\nCannot haplotype ' 'patient if all the input sequence files are not fastqs.') if (({re.search('tumor_dna_((bam)|(fastq_1)).*', x) for x in test_set} == {None} or {re.search('normal_dna_((bam)|(fastq_1)).*', x) for x in test_set} == {None}) and ('mutation_vcf' not in test_set and 'fusion_bedpe' not in test_set)): raise ParameterError(('The patient entry for sample %s ' % patient_name) + 'does not contain a mutation_vcf or fusion_bedpe entry. If both ' 'tumor and normal DNA sequences (fastqs or bam) are not provided, ' 'a pre-computed vcf and/or bedpe must be provided.') if {re.search('tumor_rna_((bam)|(fastq_1)).*', x) for x in test_set} == {None}: if 'mutation_vcf' not in test_set and 'fusion_bedpe' in test_set: pass else: raise ParameterError(('The patient entry for sample %s ' % patient_name) + 'does not contain a tumor rna sequence data entry. We require ' 'either tumor_rna_fastq_1 or tumor_rna_bam.') if 'tumor_rna_bam' in test_set and 'tumor_rna_transcriptome_bam' not in test_set: if 'expression_files' not in test_set: raise ParameterError(('The patient entry for sample %s ' % patient_name + 'was provided a tumor rna bam with sequences mapped to the ' 'genome but was not provided a matching rna bam for the ' 'transcriptome or a tar containing expression values. ' 'We require either a matching transcriptome bam to estimate' 'expression, or the precomputed expression values.'))

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{'id': '32', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'if_statement', 'children': ['36', '45', '52']}; {'id': '36', 'type': 'boolean_operator', 'children': ['37', '40'], 'value': 'or'}, {'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': 'not'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'input_dict'}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '44'], 'value': 'is'}, {'id': '41', 'type': 'subscript', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'input_dict'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '44', 'type': 'None', 'children': []}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '51']}; 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{'id': '64', 'type': 'argument_list', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '66', 'type': 'dictionary', 'children': []}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '73']}; {'id': '70', 'type': 'subscript', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'input_dict'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '74', 'type': 'else_clause', 'children': ['75']}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'if_statement', 'children': ['77', '86']}, {'id': '77', 'type': 'boolean_operator', 'children': ['78', '81'], 'value': 'or'}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': 'not'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'input_dict'}, {'id': '81', 'type': 'comparison_operator', 'children': ['82', '85'], 'value': 'is'}; {'id': '82', 'type': 'subscript', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'input_dict'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '85', 'type': 'None', 'children': []}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '92']}, {'id': '89', 'type': 'subscript', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'input_dict'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '93', 'type': 'return_statement', 'children': ['94']}

def _add_default_entries(input_dict, defaults_dict): for key, value in defaults_dict.iteritems(): if key == 'patients': print('Cannot default `patients`.') continue if isinstance(value, dict): if key not in input_dict or input_dict[key] is None: input_dict[key] = value else: r = _add_default_entries(input_dict.get(key, {}), value) input_dict[key] = r else: if key not in input_dict or input_dict[key] is None: input_dict[key] = value return input_dict

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{'id': '76', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '77', 'type': 'False', 'children': []}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'add_argument'}, {'id': '83', 'type': 'argument_list', 'children': ['84', '85', '88', '96', '99', '102']}; {'id': '84', 'type': 'string', 'children': [], 'value': "'--max-cores-per-job'"}, {'id': '85', 'type': 'keyword_argument', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'dest'}, {'id': '87', 'type': 'string', 'children': [], 'value': "'max_cores'"}; {'id': '88', 'type': 'keyword_argument', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'help'}; {'id': '90', 'type': 'concatenated_string', 'children': ['91', '92', '93', '94', '95']}, {'id': '91', 'type': 'string', 'children': [], 'value': "'Maximum cores to use per '"}; {'id': '92', 'type': 'string', 'children': [], 'value': "'job. Aligners and Haplotypers ask for cores dependent on the machine that '"}, {'id': '93', 'type': 'string', 'children': [], 'value': "'the launchpad gets assigned to -- In a heterogeneous cluster, this can '"}; {'id': '94', 'type': 'string', 'children': [], 'value': "'lead to problems. 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{'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '133']}; {'id': '128', 'type': 'attribute', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'Job'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'Runner'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'addToilOptions'}, {'id': '133', 'type': 'argument_list', 'children': ['134']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'parser'}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'assignment', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'parser'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; 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{'id': '158', 'type': 'if_statement', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'maxCores'}; {'id': '162', 'type': 'block', 'children': ['163']}, {'id': '163', 'type': 'if_statement', 'children': ['164', '168', '180']}; {'id': '164', 'type': 'not_operator', 'children': ['165']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'max_cores'}; {'id': '168', 'type': 'block', 'children': ['169']}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'assignment', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'max_cores'}; {'id': '174', 'type': 'call', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'maxCores'}; {'id': '180', 'type': 'else_clause', 'children': ['181']}, {'id': '181', 'type': 'block', 'children': ['182']}; {'id': '182', 'type': 'if_statement', 'children': ['183', '193']}, {'id': '183', 'type': 'comparison_operator', 'children': ['184', '187'], 'value': '>'}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'max_cores'}, {'id': '187', 'type': 'call', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'maxCores'}, {'id': '193', 'type': 'block', 'children': ['194', '214']}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'call', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '197', 'type': 'argument_list', 'children': ['198', '209']}; {'id': '198', 'type': 'binary_operator', 'children': ['199', '202'], 'value': '%'}, {'id': '199', 'type': 'concatenated_string', 'children': ['200', '201']}; {'id': '200', 'type': 'string', 'children': [], 'value': '"The value provided to max-cores-per-job (%s) was greater than that "'}, {'id': '201', 'type': 'string', 'children': [], 'value': '"provided to maxCores (%s). Setting max-cores-per-job = maxCores."'}; {'id': '202', 'type': 'tuple', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'max_cores'}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'maxCores'}, {'id': '209', 'type': 'keyword_argument', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '214', 'type': 'expression_statement', 'children': ['215']}, {'id': '215', 'type': 'assignment', 'children': ['216', '219']}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'max_cores'}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '221', 'type': 'argument_list', 'children': ['222']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'maxCores'}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'assignment', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '228', 'type': 'call', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'Job'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '232', 'type': 'argument_list', 'children': ['233', '234', '237']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'parse_config_file'}; {'id': '234', 'type': 'attribute', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'config_file'}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'max_cores'}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'call', 'children': ['242', '247']}; {'id': '242', 'type': 'attribute', 'children': ['243', '246']}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'Job'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'Runner'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'startToil'}, {'id': '247', 'type': 'argument_list', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '250', 'type': 'return_statement', 'children': ['251']}, {'id': '251', 'type': 'None', 'children': []}

def main(): parser = argparse.ArgumentParser(prog='ProTECT', description='Prediction of T-Cell Epitopes for Cancer Therapy', epilog='Contact Arjun Rao ([email protected]) if you encounter ' 'any problems while running ProTECT') inputs = parser.add_mutually_exclusive_group(required=True) inputs.add_argument('--config_file', dest='config_file', help='Config file to be used in the ' 'run.', type=str, default=None) inputs.add_argument('--generate_config', dest='generate_config', help='Generate a config file ' 'in the current directory that is pre-filled with references and flags for ' 'an hg19 run.', action='store_true', default=False) parser.add_argument('--max-cores-per-job', dest='max_cores', help='Maximum cores to use per ' 'job. Aligners and Haplotypers ask for cores dependent on the machine that ' 'the launchpad gets assigned to -- In a heterogeneous cluster, this can ' 'lead to problems. This value should be set to the number of cpus on the ' 'smallest node in a cluster.', type=int, required=False, default=None) params, others = parser.parse_known_args() if params.generate_config: generate_config_file() else: Job.Runner.addToilOptions(parser) params = parser.parse_args() params.config_file = os.path.abspath(params.config_file) if params.maxCores: if not params.max_cores: params.max_cores = int(params.maxCores) else: if params.max_cores > int(params.maxCores): print("The value provided to max-cores-per-job (%s) was greater than that " "provided to maxCores (%s). Setting max-cores-per-job = maxCores." % (params.max_cores, params.maxCores), file=sys.stderr) params.max_cores = int(params.maxCores) start = Job.wrapJobFn(parse_config_file, params.config_file, params.max_cores) Job.Runner.startToil(start, params) return None

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{'id': '28', 'type': 'identifier', 'children': [], 'value': 'bwa_disk'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'fastqs'}; {'id': '30', 'type': 'subscript', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'bwa_options'}; {'id': '32', 'type': 'string', 'children': [], 'value': "'index'"}, {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'memory'}, {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '37', 'type': 'string', 'children': [], 'value': "'java_Xmx'"}; {'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'cores'}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'bwa_options'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'n'"}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'sam2bam'}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52', '57', '58', '59', '62', '73']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'bam_conversion'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'bwa'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'sample_type'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '59', 'type': 'subscript', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'bwa_options'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'samtools'"}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'disk'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'sam2bam_disk'}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'bwa'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '72', 'type': 'argument_list', 'children': []}, {'id': '73', 'type': 'keyword_argument', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'memory'}, {'id': '75', 'type': 'subscript', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '77', 'type': 'string', 'children': [], 'value': "'java_Xmx'"}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'reheader'}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}, {'id': '85', 'type': 'argument_list', 'children': ['86', '87', '92', '93', '94', '97', '108']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'fix_bam_header'}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'sam2bam'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '91', 'type': 'argument_list', 'children': []}; 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{'id': '108', 'type': 'keyword_argument', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'memory'}; {'id': '110', 'type': 'subscript', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '112', 'type': 'string', 'children': [], 'value': "'java_Xmx'"}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'regroup'}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '120', 'type': 'argument_list', 'children': ['121', '122', '127', '128', '129', '132', '143']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'add_readgroups'}; {'id': '122', 'type': 'call', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'reheader'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '126', 'type': 'argument_list', 'children': []}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'sample_type'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '129', 'type': 'subscript', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'bwa_options'}, {'id': '131', 'type': 'string', 'children': [], 'value': "'picard'"}; {'id': '132', 'type': 'keyword_argument', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'disk'}; {'id': '134', 'type': 'call', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}; {'id': '136', 'type': 'argument_list', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'regroup_disk'}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'reheader'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '142', 'type': 'argument_list', 'children': []}, {'id': '143', 'type': 'keyword_argument', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'memory'}, {'id': '145', 'type': 'subscript', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '147', 'type': 'string', 'children': [], 'value': "'java_Xmx'"}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'mkdup'}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}, {'id': '155', 'type': 'argument_list', 'children': ['156', '157', '162', '163', '164', '167', '178']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'mark_duplicates'}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'regroup'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '161', 'type': 'argument_list', 'children': []}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'sample_type'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '164', 'type': 'subscript', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'bwa_options'}; {'id': '166', 'type': 'string', 'children': [], 'value': "'picard'"}, {'id': '167', 'type': 'keyword_argument', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '169', 'type': 'call', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}, {'id': '171', 'type': 'argument_list', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'mkdup_disk'}, {'id': '173', 'type': 'call', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'regroup'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '177', 'type': 'argument_list', 'children': []}; {'id': '178', 'type': 'keyword_argument', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'memory'}; {'id': '180', 'type': 'subscript', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '182', 'type': 'string', 'children': [], 'value': "'java_Xmx'"}, {'id': '183', 'type': 'expression_statement', 'children': ['184']}; {'id': '184', 'type': 'assignment', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '186', 'type': 'call', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '190', 'type': 'argument_list', 'children': ['191', '192', '197', '198', '199', '202', '205', '216']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'index_bamfile'}; {'id': '192', 'type': 'call', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'mkdup'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '196', 'type': 'argument_list', 'children': []}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'sample_type'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '199', 'type': 'subscript', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'bwa_options'}, {'id': '201', 'type': 'string', 'children': [], 'value': "'samtools'"}; {'id': '202', 'type': 'keyword_argument', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'sample_info'}; {'id': '204', 'type': 'string', 'children': [], 'value': "'fix_pg_sorted'"}, {'id': '205', 'type': 'keyword_argument', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '207', 'type': 'call', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}, {'id': '209', 'type': 'argument_list', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'index_disk'}, {'id': '211', 'type': 'call', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'mkdup'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '215', 'type': 'argument_list', 'children': []}; {'id': '216', 'type': 'keyword_argument', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'memory'}; {'id': '218', 'type': 'subscript', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '220', 'type': 'string', 'children': [], 'value': "'java_Xmx'"}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'call', 'children': ['223', '226']}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'addChild'}; {'id': '226', 'type': 'argument_list', 'children': ['227']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'bwa'}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'call', 'children': ['230', '233']}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'bwa'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'addChild'}, {'id': '233', 'type': 'argument_list', 'children': ['234']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'sam2bam'}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'call', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'sam2bam'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'addChild'}; {'id': '240', 'type': 'argument_list', 'children': ['241']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'reheader'}; {'id': '242', 'type': 'expression_statement', 'children': ['243']}, {'id': '243', 'type': 'call', 'children': ['244', '247']}; {'id': '244', 'type': 'attribute', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'reheader'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'addChild'}, {'id': '247', 'type': 'argument_list', 'children': ['248']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'regroup'}, {'id': '249', 'type': 'expression_statement', 'children': ['250']}; {'id': '250', 'type': 'call', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'regroup'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'addChild'}; {'id': '254', 'type': 'argument_list', 'children': ['255']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'mkdup'}; {'id': '256', 'type': 'expression_statement', 'children': ['257']}, {'id': '257', 'type': 'call', 'children': ['258', '261']}; {'id': '258', 'type': 'attribute', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'mkdup'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'addChild'}, {'id': '261', 'type': 'argument_list', 'children': ['262']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '263', 'type': 'return_statement', 'children': ['264']}; {'id': '264', 'type': 'call', 'children': ['265', '268']}, {'id': '265', 'type': 'attribute', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'rv'}

def align_dna(job, fastqs, sample_type, univ_options, bwa_options): bwa = job.wrapJobFn(run_bwa, fastqs, sample_type, univ_options, bwa_options, disk=PromisedRequirement(bwa_disk, fastqs, bwa_options['index']), memory=univ_options['java_Xmx'], cores=bwa_options['n']) sam2bam = job.wrapJobFn(bam_conversion, bwa.rv(), sample_type, univ_options, bwa_options['samtools'], disk=PromisedRequirement(sam2bam_disk, bwa.rv()), memory=univ_options['java_Xmx']) reheader = job.wrapJobFn(fix_bam_header, sam2bam.rv(), sample_type, univ_options, bwa_options['samtools'], disk=PromisedRequirement(sam2bam_disk, bwa.rv()), memory=univ_options['java_Xmx']) regroup = job.wrapJobFn(add_readgroups, reheader.rv(), sample_type, univ_options, bwa_options['picard'], disk=PromisedRequirement(regroup_disk, reheader.rv()), memory=univ_options['java_Xmx']) mkdup = job.wrapJobFn(mark_duplicates, regroup.rv(), sample_type, univ_options, bwa_options['picard'], disk=PromisedRequirement(mkdup_disk, regroup.rv()), memory=univ_options['java_Xmx']) index = job.wrapJobFn(index_bamfile, mkdup.rv(), sample_type, univ_options, bwa_options['samtools'], sample_info='fix_pg_sorted', disk=PromisedRequirement(index_disk, mkdup.rv()), memory=univ_options['java_Xmx']) job.addChild(bwa) bwa.addChild(sam2bam) sam2bam.addChild(reheader) reheader.addChild(regroup) regroup.addChild(mkdup) mkdup.addChild(index) return index.rv()

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '6', 'type': 'block', 'children': ['7', '73', '80', '104', '119']}, {'id': '7', 'type': 'try_statement', 'children': ['8', '16', '40']}; {'id': '8', 'type': 'block', 'children': ['9']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'module'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'import_module'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '16', 'type': 'except_clause', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'ImportError'}; {'id': '18', 'type': 'block', 'children': ['19', '23', '35']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'module'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '29']}, {'id': '25', 'type': 'pattern_list', 'children': ['26', '27', '28']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'mod_path'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'cls_name'}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'rpartition'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'string', 'children': [], 'value': "'.'"}, {'id': '35', 'type': 'if_statement', 'children': ['36', '38']}; {'id': '36', 'type': 'not_operator', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'mod_path'}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'raise_statement', 'children': []}; {'id': '40', 'type': 'else_clause', 'children': ['41']}, {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'try_statement', 'children': ['43', '50', '59']}, {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'module'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'default_bot'}; {'id': '50', 'type': 'except_clause', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'AttributeError'}; {'id': '52', 'type': 'block', 'children': ['53']}, {'id': '53', 'type': 'return_statement', 'children': ['54']}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '58']}, {'id': '57', 'type': 'string', 'children': [], 'value': "f'{entry}.Bot'"}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'module'}, {'id': '59', 'type': 'else_clause', 'children': ['60']}; {'id': '60', 'type': 'block', 'children': ['61']}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '67']}, {'id': '63', 'type': 'pattern_list', 'children': ['64', '65', '66']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'mod_path'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'cls_name'}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'rpartition'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'string', 'children': [], 'value': "'.'"}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'mod'}; {'id': '76', 'type': 'call', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'import_module'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'mod_path'}; {'id': '80', 'type': 'try_statement', 'children': ['81', '90']}, {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'bot_cls'}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '87', 'type': 'argument_list', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'mod'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'cls_name'}; {'id': '90', 'type': 'except_clause', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'AttributeError'}; {'id': '92', 'type': 'block', 'children': ['93', '103']}, {'id': '93', 'type': 'if_statement', 'children': ['94', '97']}; {'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': 'is'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'module'}; {'id': '96', 'type': 'None', 'children': []}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'import_module'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '103', 'type': 'raise_statement', 'children': []}; {'id': '104', 'type': 'if_statement', 'children': ['105', '111']}, {'id': '105', 'type': 'not_operator', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'issubclass'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'bot_cls'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'Bot'}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'raise_statement', 'children': ['113']}, {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'ImproperlyConfigured'}, {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'binary_operator', 'children': ['117', '118'], 'value': '%'}, {'id': '117', 'type': 'string', 'children': [], 'value': '"\'%s\' isn\'t a subclass of Bot."'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '119', 'type': 'return_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '122', 'type': 'argument_list', 'children': ['123', '124', '125']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'mod'}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'bot_cls'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'label'}

def create(cls, entry): try: module = import_module(entry) except ImportError: module = None mod_path, _, cls_name = entry.rpartition('.') if not mod_path: raise else: try: entry = module.default_bot except AttributeError: return cls(f'{entry}.Bot', module) else: mod_path, _, cls_name = entry.rpartition('.') mod = import_module(mod_path) try: bot_cls = getattr(mod, cls_name) except AttributeError: if module is None: import_module(entry) raise if not issubclass(bot_cls, Bot): raise ImproperlyConfigured( "'%s' isn't a subclass of Bot." % entry) return cls(entry, mod, bot_cls.label)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'populate'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'installed_bots'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '15']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'ready'}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'return_statement', 'children': []}, {'id': '15', 'type': 'with_statement', 'children': ['16', '21']}; {'id': '16', 'type': 'with_clause', 'children': ['17']}, {'id': '17', 'type': 'with_item', 'children': ['18']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': '_lock'}, {'id': '21', 'type': 'block', 'children': ['22', '28', '38', '44', '121', '139', '157', '174', '180', '196', '202']}; {'id': '22', 'type': 'if_statement', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ready'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'return_statement', 'children': []}; {'id': '28', 'type': 'if_statement', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'loading'}; 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def populate(self, installed_bots=None): if self.ready: return with self._lock: if self.ready: return if self.loading: raise RuntimeError("populate() isn't re-entrant") self.loading = True for entry in installed_bots or {}: if isinstance(entry, Bot): cls = entry entry = '.'.join([cls.__module__, cls.__name__]) bot_reg = BotRegistry.create(entry) if bot_reg.label in self.bots: raise ImproperlyConfigured( "Bot labels aren't unique, " "duplicates: %s" % bot_reg.label) self.bots[bot_reg.label] = bot_reg bot_reg.bots = self counts = Counter( bot_reg.name for bot_reg in self.bots.values()) duplicates = [ name for name, count in counts.most_common() if count > 1] if duplicates: raise ImproperlyConfigured( "Bot names aren't unique, " "duplicates: %s" % ", ".join(duplicates)) self.bots_ready = True for bot in self.bots.values(): bot.import_configs() self.configs_ready = True self.ready = True

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{'id': '144', 'type': 'argument_list', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '146', 'type': 'string', 'children': [], 'value': "'file_storage'"}, {'id': '147', 'type': 'block', 'children': ['148']}; {'id': '148', 'type': 'raise_statement', 'children': ['149']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'NoFileStorageConfigured'}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'assignment', 'children': ['152', '155']}; {'id': '152', 'type': 'subscript', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '154', 'type': 'string', 'children': [], 'value': "'form_list'"}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'init_form_list'}; {'id': '156', 'type': 'return_statement', 'children': ['157']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'kwargs'}

def get_initkwargs(cls, form_list, initial_dict=None, instance_dict=None, condition_dict=None, *args, **kwargs): kwargs.update({ 'initial_dict': initial_dict or {}, 'instance_dict': instance_dict or {}, 'condition_dict': condition_dict or {}, }) init_form_list = SortedDict() assert len(form_list) > 0, 'at least one form is needed' for i, form in enumerate(form_list): if isinstance(form, (list, tuple)): init_form_list[unicode(form[0])] = form[1] else: init_form_list[unicode(i)] = form for form in init_form_list.itervalues(): if issubclass(form, formsets.BaseFormSet): form = form.form for field in form.base_fields.itervalues(): if (isinstance(field, forms.FileField) and not hasattr(cls, 'file_storage')): raise NoFileStorageConfigured kwargs['form_list'] = init_form_list return kwargs

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{'id': '32', 'type': 'identifier', 'children': [], 'value': 'get_form_list'}, {'id': '33', 'type': 'argument_list', 'children': []}; {'id': '34', 'type': 'block', 'children': ['35', '43', '79']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '42']}, {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'storage'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'current_step'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'wizard_prev_step'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'form'}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; 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{'id': '64', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '67', 'type': 'call', 'children': ['68', '73']}; {'id': '68', 'type': 'attribute', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'storage'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'get_step_files'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'attribute', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'steps'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '79', 'type': 'return_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'render'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'form'}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'assignment', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'management_form'}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'ManagementForm'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '97']}; {'id': '92', 'type': 'attribute', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'request'}; 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{'id': '126', 'type': 'comparison_operator', 'children': ['127', '128'], 'value': '!='}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'form_current_step'}; {'id': '128', 'type': 'attribute', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'steps'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '133', 'type': 'comparison_operator', 'children': ['134', '139'], 'value': 'is'}; {'id': '134', 'type': 'attribute', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'storage'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'current_step'}, {'id': '139', 'type': 'None', 'children': []}; {'id': '140', 'type': 'block', 'children': ['141']}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; 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{'id': '174', 'type': 'identifier', 'children': [], 'value': 'form'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'is_valid'}; {'id': '176', 'type': 'argument_list', 'children': []}, {'id': '177', 'type': 'block', 'children': ['178', '197', '216']}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'call', 'children': ['180', '185']}; {'id': '180', 'type': 'attribute', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'storage'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'set_step_data'}, {'id': '185', 'type': 'argument_list', 'children': ['186', '191']}; {'id': '186', 'type': 'attribute', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'steps'}; 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{'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'steps'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '210', 'type': 'call', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'process_step_files'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'form'}; {'id': '216', 'type': 'if_statement', 'children': ['217', '228', '238']}, {'id': '217', 'type': 'comparison_operator', 'children': ['218', '223'], 'value': '=='}; {'id': '218', 'type': 'attribute', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'steps'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '223', 'type': 'attribute', 'children': ['224', '227']}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'steps'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'last'}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'return_statement', 'children': ['230']}; {'id': '230', 'type': 'call', 'children': ['231', '234']}, {'id': '231', 'type': 'attribute', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'render_done'}; {'id': '234', 'type': 'argument_list', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'form'}; {'id': '236', 'type': 'dictionary_splat', 'children': ['237']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '238', 'type': 'else_clause', 'children': ['239']}, {'id': '239', 'type': 'block', 'children': ['240']}; {'id': '240', 'type': 'return_statement', 'children': ['241']}, {'id': '241', 'type': 'call', 'children': ['242', '245']}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'render_next_step'}, {'id': '245', 'type': 'argument_list', 'children': ['246']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'form'}, {'id': '247', 'type': 'return_statement', 'children': ['248']}; {'id': '248', 'type': 'call', 'children': ['249', '252']}, {'id': '249', 'type': 'attribute', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'render'}; {'id': '252', 'type': 'argument_list', 'children': ['253']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'form'}

def post(self, *args, **kwargs): wizard_prev_step = self.request.POST.get('wizard_prev_step', None) if wizard_prev_step and wizard_prev_step in self.get_form_list(): self.storage.current_step = wizard_prev_step form = self.get_form( data=self.storage.get_step_data(self.steps.current), files=self.storage.get_step_files(self.steps.current)) return self.render(form) management_form = ManagementForm(self.request.POST, prefix=self.prefix) if not management_form.is_valid(): raise ValidationError( 'ManagementForm data is missing or has been tampered.') form_current_step = management_form.cleaned_data['current_step'] if (form_current_step != self.steps.current and self.storage.current_step is not None): self.storage.current_step = form_current_step form = self.get_form(data=self.request.POST, files=self.request.FILES) if form.is_valid(): self.storage.set_step_data(self.steps.current, self.process_step(form)) self.storage.set_step_files(self.steps.current, self.process_step_files(form)) if self.steps.current == self.steps.last: return self.render_done(form, **kwargs) else: return self.render_next_step(form) return self.render(form)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_config_file'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'config_file'}; {'id': '6', 'type': 'block', 'children': ['7', '16', '27', '45', '51', '57', '63', '229', '244', '260', '280', '300']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '14']}, {'id': '9', 'type': 'attribute', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'logToMaster'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'string', 'children': [], 'value': "'Parsing config file'"}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'config_file'}, {'id': '19', 'type': 'call', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'abspath'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'config_file'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '37']}; {'id': '28', 'type': 'not_operator', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '35']}; {'id': '30', 'type': 'attribute', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'config_file'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'raise_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'binary_operator', 'children': ['43', '44'], 'value': '+'}, {'id': '43', 'type': 'string', 'children': [], 'value': "'The config file was not found at specified location. Please verify '"}; {'id': '44', 'type': 'string', 'children': [], 'value': "'and retry.'"}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'sample_set'}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '50', 'type': 'argument_list', 'children': []}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'tool_options'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '62', 'type': 'argument_list', 'children': []}, {'id': '63', 'type': 'with_statement', 'children': ['64', '74']}; {'id': '64', 'type': 'with_clause', 'children': ['65']}, {'id': '65', 'type': 'with_item', 'children': ['66']}; {'id': '66', 'type': 'as_pattern', 'children': ['67', '72']}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'config_file'}, {'id': '71', 'type': 'string', 'children': [], 'value': "'r'"}; {'id': '72', 'type': 'as_pattern_target', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '74', 'type': 'block', 'children': ['75', '102']}, {'id': '75', 'type': 'for_statement', 'children': ['76', '77', '78']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '78', 'type': 'block', 'children': ['79', '87']}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '86', 'type': 'argument_list', 'children': []}, {'id': '87', 'type': 'if_statement', 'children': ['88', '91', '100']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '91', 'type': 'ERROR', 'children': ['92', '93', '94']}; {'id': '92', 'type': 'ERROR', 'children': []}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'continue'}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'BEGIN'"}; {'id': '100', 'type': 'block', 'children': ['101']}, {'id': '101', 'type': 'break_statement', 'children': []}; {'id': '102', 'type': 'for_statement', 'children': ['103', '106', '111']}, {'id': '103', 'type': 'pattern_list', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'groupname'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'group_params'}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'tool_specific_param_generator'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'conf'}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'if_statement', 'children': ['113', '116', '139', '221']}, {'id': '113', 'type': 'comparison_operator', 'children': ['114', '115'], 'value': '=='}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'groupname'}, {'id': '115', 'type': 'string', 'children': [], 'value': "'patient'"}; {'id': '116', 'type': 'block', 'children': ['117', '131']}, {'id': '117', 'type': 'if_statement', 'children': ['118', '125']}; {'id': '118', 'type': 'comparison_operator', 'children': ['119', '120'], 'value': 'not'}, {'id': '119', 'type': 'string', 'children': [], 'value': "'patient_id'"}; {'id': '120', 'type': 'call', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'group_params'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '124', 'type': 'argument_list', 'children': []}, {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'raise_statement', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'string', 'children': [], 'value': "'A patient group is missing the patient_id flag.'"}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'assignment', 'children': ['133', '138']}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'sample_set'}, {'id': '135', 'type': 'subscript', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'group_params'}, {'id': '137', 'type': 'string', 'children': [], 'value': "'patient_id'"}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'group_params'}, {'id': '139', 'type': 'elif_clause', 'children': ['140', '143']}; {'id': '140', 'type': 'comparison_operator', 'children': ['141', '142'], 'value': '=='}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'groupname'}; {'id': '142', 'type': 'string', 'children': [], 'value': "'Universal_Options'"}, {'id': '143', 'type': 'block', 'children': ['144', '148', '155', '171', '193']}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'assignment', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'group_params'}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'required_options'}, {'id': '151', 'type': 'set', 'children': ['152', '153', '154']}; {'id': '152', 'type': 'string', 'children': [], 'value': "'java_Xmx'"}, {'id': '153', 'type': 'string', 'children': [], 'value': "'output_folder'"}; {'id': '154', 'type': 'string', 'children': [], 'value': "'storage_location'"}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'assignment', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'missing_opts'}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'required_options'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'difference'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'call', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '165', 'type': 'argument_list', 'children': ['166']}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '170', 'type': 'argument_list', 'children': []}, {'id': '171', 'type': 'if_statement', 'children': ['172', '178']}; {'id': '172', 'type': 'comparison_operator', 'children': ['173', '177'], 'value': '>'}, {'id': '173', 'type': 'call', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '175', 'type': 'argument_list', 'children': ['176']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'missing_opts'}, {'id': '177', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '178', 'type': 'block', 'children': ['179']}, {'id': '179', 'type': 'raise_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}; {'id': '182', 'type': 'argument_list', 'children': ['183']}, {'id': '183', 'type': 'binary_operator', 'children': ['184', '187'], 'value': '+'}; {'id': '184', 'type': 'concatenated_string', 'children': ['185', '186']}, {'id': '185', 'type': 'string', 'children': [], 'value': "' The following options have no arguments in the config '"}; {'id': '186', 'type': 'string', 'children': [], 'value': "'file :\\n'"}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'missing_opts'}, {'id': '193', 'type': 'if_statement', 'children': ['194', '197']}; {'id': '194', 'type': 'subscript', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '196', 'type': 'string', 'children': [], 'value': "'sse_key_is_master'"}, {'id': '197', 'type': 'block', 'children': ['198', '208']}; {'id': '198', 'type': 'assert_statement', 'children': ['199']}, {'id': '199', 'type': 'comparison_operator', 'children': ['200', '203'], 'value': 'in'}; {'id': '200', 'type': 'subscript', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '202', 'type': 'string', 'children': [], 'value': "'sse_key_is_master'"}, {'id': '203', 'type': 'tuple', 'children': ['204', '205', '206', '207']}; {'id': '204', 'type': 'string', 'children': [], 'value': "'True'"}, {'id': '205', 'type': 'string', 'children': [], 'value': "'true'"}; {'id': '206', 'type': 'string', 'children': [], 'value': "'False'"}, {'id': '207', 'type': 'string', 'children': [], 'value': "'false'"}; {'id': '208', 'type': 'expression_statement', 'children': ['209']}, {'id': '209', 'type': 'assignment', 'children': ['210', '213', '214']}; {'id': '210', 'type': 'subscript', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '212', 'type': 'string', 'children': [], 'value': "'sse_key_is_master'"}, {'id': '213', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '214', 'type': 'comparison_operator', 'children': ['215', '218'], 'value': 'in'}, {'id': '215', 'type': 'subscript', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '217', 'type': 'string', 'children': [], 'value': "'sse_key_is_master'"}; {'id': '218', 'type': 'tuple', 'children': ['219', '220']}, {'id': '219', 'type': 'string', 'children': [], 'value': "'True'"}; {'id': '220', 'type': 'string', 'children': [], 'value': "'true'"}, {'id': '221', 'type': 'else_clause', 'children': ['222']}; {'id': '222', 'type': 'block', 'children': ['223']}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'assignment', 'children': ['225', '228']}, {'id': '225', 'type': 'subscript', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'tool_options'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'groupname'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'group_params'}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'assignment', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'required_tools'}; {'id': '232', 'type': 'set', 'children': ['233', '234', '235', '236', '237', '238', '239', '240', '241', '242', '243']}, {'id': '233', 'type': 'string', 'children': [], 'value': "'cutadapt'"}; {'id': '234', 'type': 'string', 'children': [], 'value': "'bwa'"}, {'id': '235', 'type': 'string', 'children': [], 'value': "'star'"}; {'id': '236', 'type': 'string', 'children': [], 'value': "'phlat'"}, {'id': '237', 'type': 'string', 'children': [], 'value': "'transgene'"}; {'id': '238', 'type': 'string', 'children': [], 'value': "'mut_callers'"}, {'id': '239', 'type': 'string', 'children': [], 'value': "'rsem'"}; {'id': '240', 'type': 'string', 'children': [], 'value': "'mhci'"}, {'id': '241', 'type': 'string', 'children': [], 'value': "'mhcii'"}; {'id': '242', 'type': 'string', 'children': [], 'value': "'snpeff'"}, {'id': '243', 'type': 'string', 'children': [], 'value': "'rank_boost'"}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'assignment', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'missing_tools'}, {'id': '247', 'type': 'call', 'children': ['248', '251']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'required_tools'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'difference'}, {'id': '251', 'type': 'argument_list', 'children': ['252']}; {'id': '252', 'type': 'call', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '254', 'type': 'argument_list', 'children': ['255']}, {'id': '255', 'type': 'call', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'tool_options'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '259', 'type': 'argument_list', 'children': []}; {'id': '260', 'type': 'if_statement', 'children': ['261', '267']}, {'id': '261', 'type': 'comparison_operator', 'children': ['262', '266'], 'value': '>'}; {'id': '262', 'type': 'call', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'missing_tools'}; {'id': '266', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '267', 'type': 'block', 'children': ['268']}; {'id': '268', 'type': 'raise_statement', 'children': ['269']}, {'id': '269', 'type': 'call', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'ParameterError'}, {'id': '271', 'type': 'argument_list', 'children': ['272']}; {'id': '272', 'type': 'binary_operator', 'children': ['273', '274'], 'value': '+'}, {'id': '273', 'type': 'string', 'children': [], 'value': "' The following tools have no arguments in the config file : \\n'"}; {'id': '274', 'type': 'call', 'children': ['275', '278']}, {'id': '275', 'type': 'attribute', 'children': ['276', '277']}; {'id': '276', 'type': 'string', 'children': [], 'value': "'\\n'"}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '278', 'type': 'argument_list', 'children': ['279']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'missing_tools'}; {'id': '280', 'type': 'for_statement', 'children': ['281', '282', '287']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'patient_id'}; {'id': '282', 'type': 'call', 'children': ['283', '286']}, {'id': '283', 'type': 'attribute', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'sample_set'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '286', 'type': 'argument_list', 'children': []}, {'id': '287', 'type': 'block', 'children': ['288']}; {'id': '288', 'type': 'expression_statement', 'children': ['289']}, {'id': '289', 'type': 'call', 'children': ['290', '293']}; {'id': '290', 'type': 'attribute', 'children': ['291', '292']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'addFollowOnJobFn'}, {'id': '293', 'type': 'argument_list', 'children': ['294', '295', '298', '299']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'pipeline_launchpad'}, {'id': '295', 'type': 'subscript', 'children': ['296', '297']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'sample_set'}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'patient_id'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'tool_options'}; {'id': '300', 'type': 'return_statement', 'children': ['301']}, {'id': '301', 'type': 'None', 'children': []}

def parse_config_file(job, config_file): job.fileStore.logToMaster('Parsing config file') config_file = os.path.abspath(config_file) if not os.path.exists(config_file): raise ParameterError('The config file was not found at specified location. Please verify ' + 'and retry.') sample_set = defaultdict() univ_options = defaultdict() tool_options = defaultdict() with open(config_file, 'r') as conf: for line in conf: line = line.strip() if line.startswith(' continue if line.startswith('BEGIN'): break for groupname, group_params in tool_specific_param_generator(job, conf): if groupname == 'patient': if 'patient_id' not in group_params.keys(): raise ParameterError('A patient group is missing the patient_id flag.') sample_set[group_params['patient_id']] = group_params elif groupname == 'Universal_Options': univ_options = group_params required_options = {'java_Xmx', 'output_folder', 'storage_location'} missing_opts = required_options.difference(set(univ_options.keys())) if len(missing_opts) > 0: raise ParameterError(' The following options have no arguments in the config ' 'file :\n' + '\n'.join(missing_opts)) if univ_options['sse_key_is_master']: assert univ_options['sse_key_is_master'] in ('True', 'true', 'False', 'false') univ_options['sse_key_is_master'] = \ univ_options['sse_key_is_master'] in ('True', 'true') else: tool_options[groupname] = group_params required_tools = {'cutadapt', 'bwa', 'star', 'phlat', 'transgene', 'mut_callers', 'rsem', 'mhci', 'mhcii', 'snpeff', 'rank_boost'} missing_tools = required_tools.difference(set(tool_options.keys())) if len(missing_tools) > 0: raise ParameterError(' The following tools have no arguments in the config file : \n' + '\n'.join(missing_tools)) for patient_id in sample_set.keys(): job.addFollowOnJobFn(pipeline_launchpad, sample_set[patient_id], univ_options, tool_options) return None

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run_star'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'fastqs'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'star_options'}; {'id': '8', 'type': 'block', 'children': ['9', '17', '30', '40', '59', '71', '108', '153', '159', '185', '196', '207', '224', '231', '241']}, {'id': '9', 'type': 'assert_statement', 'children': ['10']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '14'], 'value': 'in'}, {'id': '11', 'type': 'subscript', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'star_options'}, {'id': '13', 'type': 'string', 'children': [], 'value': "'type'"}; {'id': '14', 'type': 'tuple', 'children': ['15', '16']}, {'id': '15', 'type': 'string', 'children': [], 'value': "'star'"}; {'id': '16', 'type': 'string', 'children': [], 'value': "'starlong'"}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '24']}, {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'logToMaster'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'binary_operator', 'children': ['26', '27'], 'value': '%'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'Running STAR on %s'"}, {'id': '27', 'type': 'subscript', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '29', 'type': 'string', 'children': [], 'value': "'patient'"}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '33', 'type': 'call', 'children': ['34', '39']}; {'id': '34', 'type': 'attribute', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'getLocalTempDir'}, {'id': '39', 'type': 'argument_list', 'children': []}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '43', 'type': 'dictionary', 'children': ['44', '49', '54']}; {'id': '44', 'type': 'pair', 'children': ['45', '46']}, {'id': '45', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_1.fastq'"}; {'id': '46', 'type': 'subscript', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'fastqs'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_1.fastq'"}, {'id': '49', 'type': 'pair', 'children': ['50', '51']}; {'id': '50', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_2.fastq'"}, {'id': '51', 'type': 'subscript', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'fastqs'}, {'id': '53', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_2.fastq'"}; {'id': '54', 'type': 'pair', 'children': ['55', '56']}, {'id': '55', 'type': 'string', 'children': [], 'value': "'star_index.tar.gz'"}; {'id': '56', 'type': 'subscript', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'star_options'}; {'id': '58', 'type': 'string', 'children': [], 'value': "'index_tar'"}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'input_files'}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'get_files_from_filestore'}; {'id': '64', 'type': 'argument_list', 'children': ['65', '66', '67', '68']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '68', 'type': 'keyword_argument', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'docker'}; {'id': '70', 'type': 'True', 'children': []}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '74', 'type': 'list', 'children': ['75', '76', '82', '83', '86', '87', '88', '89', '92', '95', '96', '97', '98', '99', '100', '101', '102', '103', '104', '105', '106', '107'], 'value': "['--runThreadN', str(star_options['n']),\n '--genomeDir', input_files['star_index'],\n '--outFileNamePrefix', 'rna',\n '--readFilesIn',\n input_files['rna_cutadapt_1.fastq'],\n input_files['rna_cutadapt_2.fastq'],\n '--outSAMattributes', 'NH', 'HI', 'AS', 'NM', 'MD',\n '--outSAMtype', 'BAM', 'SortedByCoordinate',\n '--quantMode', 'TranscriptomeSAM',\n '--outSAMunmapped', 'Within']"}, {'id': '75', 'type': 'string', 'children': [], 'value': "'--runThreadN'"}; {'id': '76', 'type': 'call', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'subscript', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'star_options'}, {'id': '81', 'type': 'string', 'children': [], 'value': "'n'"}; {'id': '82', 'type': 'string', 'children': [], 'value': "'--genomeDir'"}, {'id': '83', 'type': 'subscript', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '85', 'type': 'string', 'children': [], 'value': "'star_index'"}; {'id': '86', 'type': 'string', 'children': [], 'value': "'--outFileNamePrefix'"}, {'id': '87', 'type': 'string', 'children': [], 'value': "'rna'"}; {'id': '88', 'type': 'string', 'children': [], 'value': "'--readFilesIn'"}, {'id': '89', 'type': 'subscript', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '91', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_1.fastq'"}; {'id': '92', 'type': 'subscript', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'input_files'}; {'id': '94', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_2.fastq'"}, {'id': '95', 'type': 'string', 'children': [], 'value': "'--outSAMattributes'"}; {'id': '96', 'type': 'string', 'children': [], 'value': "'NH'"}, {'id': '97', 'type': 'string', 'children': [], 'value': "'HI'"}; {'id': '98', 'type': 'string', 'children': [], 'value': "'AS'"}, {'id': '99', 'type': 'string', 'children': [], 'value': "'NM'"}; {'id': '100', 'type': 'string', 'children': [], 'value': "'MD'"}, {'id': '101', 'type': 'string', 'children': [], 'value': "'--outSAMtype'"}; {'id': '102', 'type': 'string', 'children': [], 'value': "'BAM'"}, {'id': '103', 'type': 'string', 'children': [], 'value': "'SortedByCoordinate'"}; {'id': '104', 'type': 'string', 'children': [], 'value': "'--quantMode'"}, {'id': '105', 'type': 'string', 'children': [], 'value': "'TranscriptomeSAM'"}; {'id': '106', 'type': 'string', 'children': [], 'value': "'--outSAMunmapped'"}, {'id': '107', 'type': 'string', 'children': [], 'value': "'Within'"}; {'id': '108', 'type': 'if_statement', 'children': ['109', '114', '133']}, {'id': '109', 'type': 'comparison_operator', 'children': ['110', '113'], 'value': '=='}; {'id': '110', 'type': 'subscript', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'star_options'}; {'id': '112', 'type': 'string', 'children': [], 'value': "'type'"}, {'id': '113', 'type': 'string', 'children': [], 'value': "'star'"}; {'id': '114', 'type': 'block', 'children': ['115']}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'docker_call'}; {'id': '118', 'type': 'argument_list', 'children': ['119', '122', '125', '128']}, {'id': '119', 'type': 'keyword_argument', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'tool'}, {'id': '121', 'type': 'string', 'children': [], 'value': "'star'"}; {'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'tool_parameters'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '125', 'type': 'keyword_argument', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'dockerhub'}; {'id': '130', 'type': 'subscript', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '132', 'type': 'string', 'children': [], 'value': "'dockerhub'"}, {'id': '133', 'type': 'else_clause', 'children': ['134']}; {'id': '134', 'type': 'block', 'children': ['135']}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'docker_call'}; {'id': '138', 'type': 'argument_list', 'children': ['139', '142', '145', '148']}, {'id': '139', 'type': 'keyword_argument', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'tool'}, {'id': '141', 'type': 'string', 'children': [], 'value': "'starlong'"}; {'id': '142', 'type': 'keyword_argument', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'tool_parameters'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '145', 'type': 'keyword_argument', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'dockerhub'}; {'id': '150', 'type': 'subscript', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '152', 'type': 'string', 'children': [], 'value': "'dockerhub'"}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'output_files'}; {'id': '156', 'type': 'call', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '158', 'type': 'argument_list', 'children': []}, {'id': '159', 'type': 'for_statement', 'children': ['160', '161', '164']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'bam_file'}, {'id': '161', 'type': 'list', 'children': ['162', '163'], 'value': "['rnaAligned.toTranscriptome.out.bam',\n 'rnaAligned.sortedByCoord.out.bam']"}; {'id': '162', 'type': 'string', 'children': [], 'value': "'rnaAligned.toTranscriptome.out.bam'"}, {'id': '163', 'type': 'string', 'children': [], 'value': "'rnaAligned.sortedByCoord.out.bam'"}; {'id': '164', 'type': 'block', 'children': ['165']}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '170']}, {'id': '167', 'type': 'subscript', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'output_files'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'bam_file'}; {'id': '170', 'type': 'call', 'children': ['171', '176']}, {'id': '171', 'type': 'attribute', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'call', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'string', 'children': [], 'value': "'/'"}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '181', 'type': 'argument_list', 'children': ['182']}; {'id': '182', 'type': 'list', 'children': ['183', '184'], 'value': '[\n work_dir, bam_file]'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'bam_file'}, {'id': '185', 'type': 'expression_statement', 'children': ['186']}; {'id': '186', 'type': 'call', 'children': ['187', '192']}, {'id': '187', 'type': 'attribute', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'deleteGlobalFile'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'subscript', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'fastqs'}, {'id': '195', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_1.fastq'"}; {'id': '196', 'type': 'expression_statement', 'children': ['197']}, {'id': '197', 'type': 'call', 'children': ['198', '203']}; {'id': '198', 'type': 'attribute', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'deleteGlobalFile'}, {'id': '203', 'type': 'argument_list', 'children': ['204']}; {'id': '204', 'type': 'subscript', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'fastqs'}; {'id': '206', 'type': 'string', 'children': [], 'value': "'rna_cutadapt_2.fastq'"}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'index_star'}; {'id': '210', 'type': 'call', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '214', 'type': 'argument_list', 'children': ['215', '216', '219', '220', '221']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'index_bamfile'}; {'id': '216', 'type': 'subscript', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'output_files'}; {'id': '218', 'type': 'string', 'children': [], 'value': "'rnaAligned.sortedByCoord.out.bam'"}, {'id': '219', 'type': 'string', 'children': [], 'value': "'rna'"}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '221', 'type': 'keyword_argument', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '223', 'type': 'string', 'children': [], 'value': "'120G'"}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'call', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'addChild'}, {'id': '229', 'type': 'argument_list', 'children': ['230']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'index_star'}, {'id': '231', 'type': 'expression_statement', 'children': ['232']}; {'id': '232', 'type': 'assignment', 'children': ['233', '236']}, {'id': '233', 'type': 'subscript', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'output_files'}, {'id': '235', 'type': 'string', 'children': [], 'value': "'rnaAligned.sortedByCoord.out.bam'"}; {'id': '236', 'type': 'call', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'index_star'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '240', 'type': 'argument_list', 'children': []}, {'id': '241', 'type': 'return_statement', 'children': ['242']}

def run_star(job, fastqs, univ_options, star_options): assert star_options['type'] in ('star', 'starlong') job.fileStore.logToMaster('Running STAR on %s' %univ_options['patient']) work_dir = job.fileStore.getLocalTempDir() input_files = { 'rna_cutadapt_1.fastq': fastqs['rna_cutadapt_1.fastq'], 'rna_cutadapt_2.fastq': fastqs['rna_cutadapt_2.fastq'], 'star_index.tar.gz': star_options['index_tar']} input_files = get_files_from_filestore(job, input_files, work_dir, docker=True) parameters = ['--runThreadN', str(star_options['n']), '--genomeDir', input_files['star_index'], '--outFileNamePrefix', 'rna', '--readFilesIn', input_files['rna_cutadapt_1.fastq'], input_files['rna_cutadapt_2.fastq'], '--outSAMattributes', 'NH', 'HI', 'AS', 'NM', 'MD', '--outSAMtype', 'BAM', 'SortedByCoordinate', '--quantMode', 'TranscriptomeSAM', '--outSAMunmapped', 'Within'] if star_options['type'] == 'star': docker_call(tool='star', tool_parameters=parameters, work_dir=work_dir, dockerhub=univ_options['dockerhub']) else: docker_call(tool='starlong', tool_parameters=parameters, work_dir=work_dir, dockerhub=univ_options['dockerhub']) output_files = defaultdict() for bam_file in ['rnaAligned.toTranscriptome.out.bam', 'rnaAligned.sortedByCoord.out.bam']: output_files[bam_file] = job.fileStore.writeGlobalFile('/'.join([ work_dir, bam_file])) job.fileStore.deleteGlobalFile(fastqs['rna_cutadapt_1.fastq']) job.fileStore.deleteGlobalFile(fastqs['rna_cutadapt_2.fastq']) index_star = job.wrapJobFn(index_bamfile, output_files['rnaAligned.sortedByCoord.out.bam'], 'rna', univ_options, disk='120G') job.addChild(index_star) output_files['rnaAligned.sortedByCoord.out.bam'] = index_star.rv() return output_files

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def run_bwa(job, fastqs, sample_type, univ_options, bwa_options): job.fileStore.logToMaster('Running bwa on %s:%s' % (univ_options['patient'], sample_type)) work_dir = job.fileStore.getLocalTempDir() fq_extn = '.gz' if fastqs['gzipped'] else '' input_files = { 'dna_1.fastq' + fq_extn: fastqs[sample_type][0], 'dna_2.fastq' + fq_extn: fastqs[sample_type][1], 'bwa_index.tar.gz': bwa_options['index_tar']} input_files = get_files_from_filestore(job, input_files, work_dir, docker=True) parameters = ['mem', '-t', str(bwa_options['n']), '-v', '1', '/'.join([input_files['bwa_index'], 'hg19.fa']), input_files['dna_1.fastq'], input_files['dna_2.fastq']] with open(''.join([work_dir, '/', sample_type, '_aligned.sam']), 'w') as samfile: docker_call(tool='bwa', tool_parameters=parameters, work_dir=work_dir, dockerhub=univ_options['dockerhub'], outfile=samfile) output_file = job.fileStore.writeGlobalFile(samfile.name) samfile_processing = job.wrapJobFn(bam_conversion, output_file, sample_type, univ_options, disk='60G') job.addChild(samfile_processing) return samfile_processing.rv()

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{'id': '282', 'type': 'attribute', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'parsedradfile'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '285', 'type': 'block', 'children': ['286']}; {'id': '286', 'type': 'expression_statement', 'children': ['287']}, {'id': '287', 'type': 'assignment', 'children': ['288', '298']}; {'id': '288', 'type': 'subscript', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'output_files'}; {'id': '290', 'type': 'call', 'children': ['291', '296']}, {'id': '291', 'type': 'attribute', 'children': ['292', '295']}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '296', 'type': 'argument_list', 'children': ['297']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'radia_file'}; {'id': '298', 'type': 'call', 'children': ['299', '304']}, {'id': '299', 'type': 'attribute', 'children': ['300', '303']}; {'id': '300', 'type': 'attribute', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}; {'id': '304', 'type': 'argument_list', 'children': ['305']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'radia_file'}; {'id': '306', 'type': 'return_statement', 'children': ['307']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'output_files'}

def merge_radia(job, perchrom_rvs): job.fileStore.logToMaster('Running merge_radia') work_dir = job.fileStore.getLocalTempDir() input_files = {filename: jsid for perchrom_files in perchrom_rvs.values() for filename, jsid in perchrom_files.items()} input_files = get_files_from_filestore(job, input_files, work_dir, docker=False) chromosomes = [''.join(['chr', str(x)]) for x in range(1, 23) + ['X', 'Y']] with open('/'.join([work_dir, 'radia_calls.vcf']), 'w') as radfile, \ open('/'.join([work_dir, 'radia_filter_passing_calls.vcf']), 'w') as radpassfile: for chrom in chromosomes: with open(input_files[''.join(['radia_filtered_', chrom, '.vcf'])], 'r') as filtradfile: for line in filtradfile: line = line.strip() if line.startswith(' if chrom == 'chr1': print(line, file=radfile) print(line, file=radpassfile) continue else: print(line, file=radfile) line = line.split('\t') if line[6] == 'PASS' and 'MT=GERM' not in line[7]: print('\t'.join(line), file=radpassfile) with open(radpassfile.name, 'r') as radpassfile, \ open('/'.join([work_dir, 'radia_parsed_filter_passing_calls.vcf']), 'w') as parsedradfile: parse_radia_multi_alt(radpassfile, parsedradfile) output_files = defaultdict() for radia_file in [radfile.name, parsedradfile.name]: output_files[os.path.basename(radia_file)] = job.fileStore.writeGlobalFile(radia_file) return output_files

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{'id': '334', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}, {'id': '337', 'type': 'argument_list', 'children': ['338']}; {'id': '338', 'type': 'attribute', 'children': ['339', '340']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'mutpassvcf'}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '341', 'type': 'return_statement', 'children': ['342']}

def merge_mutect(job, perchrom_rvs): job.fileStore.logToMaster('Running merge_mutect') work_dir = job.fileStore.getLocalTempDir() input_files = {filename: jsid for perchrom_files in perchrom_rvs.values() for filename, jsid in perchrom_files.items()} input_files = get_files_from_filestore(job, input_files, work_dir, docker=False) chromosomes = [''.join(['chr', str(x)]) for x in range(1, 23) + ['X', 'Y']] with open('/'.join([work_dir, 'mutect_calls.vcf']), 'w') as mutvcf, \ open('/'.join([work_dir, 'mutect_calls.out']), 'w') as mutout, \ open('/'.join([work_dir, 'mutect_passing_calls.vcf']), 'w') as mutpassvcf: out_header_not_printed = True for chrom in chromosomes: with open(input_files[''.join(['mutect_', chrom, '.vcf'])], 'r') as mutfile: for line in mutfile: line = line.strip() if line.startswith(' if chrom == 'chr1': print(line, file=mutvcf) print(line, file=mutpassvcf) continue else: print(line, file=mutvcf) line = line.split('\t') if line[6] != 'REJECT': print('\t'.join(line), file=mutpassvcf) with open(input_files[''.join(['mutect_', chrom, '.out'])], 'r') as mutfile: for line in mutfile: line = line.strip() if line.startswith(' if chrom == 'chr1': print(line, file=mutout) continue elif out_header_not_printed: print(line, file=mutout) out_header_not_printed = False else: print(line, file=mutout) output_file = job.fileStore.writeGlobalFile(mutpassvcf.name) return output_file

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def run_mutation_aggregator(job, fusion_output, radia_output, mutect_output, indel_output, univ_options): job.fileStore.logToMaster('Aggregating mutations for %s' % univ_options['patient']) work_dir = job.fileStore.getLocalTempDir() input_files = { 'mutect.vcf': mutect_output, 'radia.vcf': radia_output['radia_parsed_filter_passing_calls.vcf'], 'indel.vcf': indel_output, 'fusion.vcf': fusion_output} input_files = get_files_from_filestore(job, input_files, work_dir, docker=False) input_files.pop('indel.vcf') input_files.pop('fusion.vcf') vcf_file = defaultdict() mutcallers = input_files.keys() with open(''.join([work_dir, '/', univ_options['patient'], '_merged_mutations.vcf']), 'w') as merged_mut_file: for mut_caller in mutcallers: caller = mut_caller.rstrip('.vcf') vcf_file[caller] = defaultdict() with open(input_files[mut_caller], 'r') as mutfile: for line in mutfile: if line.startswith(' if caller == 'radia': print(line.strip(), file=merged_mut_file) continue line = line.strip().split() vcf_file[caller][(line[0], line[1], line[3], line[4])] = line merge_vcfs(vcf_file, merged_mut_file.name) export_results(merged_mut_file.name, univ_options) output_file = job.fileStore.writeGlobalFile(merged_mut_file.name) return output_file

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{'id': '64', 'type': 'with_item', 'children': ['65']}, {'id': '65', 'type': 'as_pattern', 'children': ['66', '73']}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '68', 'type': 'argument_list', 'children': ['69', '72']}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '71', 'type': 'string', 'children': [], 'value': "'normal_dna'"}; {'id': '72', 'type': 'string', 'children': [], 'value': "'r'"}, {'id': '73', 'type': 'as_pattern_target', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'nd_file'}, {'id': '75', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '76', 'type': 'with_item', 'children': ['77']}, {'id': '77', 'type': 'as_pattern', 'children': ['78', '85']}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'open'}; 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{'id': '206', 'type': 'keyword_argument', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'mhci_file'}, {'id': '209', 'type': 'expression_statement', 'children': ['210']}; {'id': '210', 'type': 'assignment', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'drb_mpa'}; {'id': '212', 'type': 'call', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'most_probable_alleles'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'subscript', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'mhc_alleles'}, {'id': '217', 'type': 'string', 'children': [], 'value': "'HLA_DRB'"}; {'id': '218', 'type': 'expression_statement', 'children': ['219']}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '221', 'type': 'argument_list', 'children': ['222', '239']}; 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{'id': '284', 'type': 'identifier', 'children': [], 'value': 'mhcii_file'}, {'id': '285', 'type': 'expression_statement', 'children': ['286']}; {'id': '286', 'type': 'assignment', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'output_files'}; {'id': '288', 'type': 'call', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '290', 'type': 'argument_list', 'children': []}, {'id': '291', 'type': 'for_statement', 'children': ['292', '293', '296']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'allele_file'}, {'id': '293', 'type': 'list', 'children': ['294', '295'], 'value': "['mhci_alleles.list', 'mhcii_alleles.list']"}; {'id': '294', 'type': 'string', 'children': [], 'value': "'mhci_alleles.list'"}, {'id': '295', 'type': 'string', 'children': [], 'value': "'mhcii_alleles.list'"}; {'id': '296', 'type': 'block', 'children': ['297']}, {'id': '297', 'type': 'expression_statement', 'children': ['298']}; 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{'id': '314', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '315', 'type': 'argument_list', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'allele_file'}; {'id': '318', 'type': 'return_statement', 'children': ['319']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'output_files'}

def merge_phlat_calls(job, tumor_phlat, normal_phlat, rna_phlat): job.fileStore.logToMaster('Merging Phlat calls') work_dir = job.fileStore.getLocalTempDir() input_files = { 'tumor_dna': tumor_phlat, 'normal_dna': normal_phlat, 'tumor_rna': rna_phlat} input_files = get_files_from_filestore(job, input_files, work_dir) with open(input_files['tumor_dna'], 'r') as td_file, \ open(input_files['normal_dna'], 'r') as nd_file, \ open(input_files['tumor_rna'], 'r') as tr_file: mhc_alleles = {'HLA_A': [], 'HLA_B': [], 'HLA_C': [], 'HLA_DPA': [], 'HLA_DQA': [], 'HLA_DPB': [], 'HLA_DQB': [], 'HLA_DRB': []} for phlatfile in td_file, nd_file, tr_file: mhc_alleles = parse_phlat_file(phlatfile, mhc_alleles) with open(os.path.join(work_dir, 'mhci_alleles.list'), 'w') as mhci_file, \ open(os.path.join(work_dir, 'mhcii_alleles.list'), 'w') as mhcii_file: for mhci_group in ['HLA_A', 'HLA_B', 'HLA_C']: mpa = most_probable_alleles(mhc_alleles[mhci_group]) print('\n'.join([''.join(['HLA-', x]) for x in mpa]), file=mhci_file) drb_mpa = most_probable_alleles(mhc_alleles['HLA_DRB']) print('\n'.join([''.join(['HLA-', x]) for x in drb_mpa]), file=mhcii_file) dqa_mpa = most_probable_alleles(mhc_alleles['HLA_DQA']) dqb_mpa = most_probable_alleles(mhc_alleles['HLA_DQB']) for dqa_allele in dqa_mpa: for dqb_allele in dqb_mpa: print(''.join(['HLA-', dqa_allele, '/', dqb_allele]), file=mhcii_file) output_files = defaultdict() for allele_file in ['mhci_alleles.list', 'mhcii_alleles.list']: output_files[allele_file] = job.fileStore.writeGlobalFile(os.path.join(work_dir, allele_file)) return output_files

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{'id': '16', 'type': 'default_parameter', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'interactive'}; {'id': '18', 'type': 'False', 'children': []}, {'id': '19', 'type': 'block', 'children': ['20', '47', '60', '91', '97', '106', '139', '207', '245', '258']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '22', 'type': 'block', 'children': ['23', '30', '41']}, {'id': '23', 'type': 'assert_statement', 'children': ['24', '29']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '29', 'type': 'string', 'children': [], 'value': "'outfile was not passsed a file'"}; {'id': '30', 'type': 'assert_statement', 'children': ['31', '40']}, {'id': '31', 'type': 'comparison_operator', 'children': ['32', '35'], 'value': 'in'}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'mode'}, {'id': '35', 'type': 'list', 'children': ['36', '37', '38', '39'], 'value': "['w', 'a', 'wb', 'ab']"}; {'id': '36', 'type': 'string', 'children': [], 'value': "'w'"}, {'id': '37', 'type': 'string', 'children': [], 'value': "'a'"}; {'id': '38', 'type': 'string', 'children': [], 'value': "'wb'"}, {'id': '39', 'type': 'string', 'children': [], 'value': "'ab'"}; {'id': '40', 'type': 'string', 'children': [], 'value': "'outfile not writeable'"}, {'id': '41', 'type': 'assert_statement', 'children': ['42', '46']}; {'id': '42', 'type': 'not_operator', 'children': ['43']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'closed'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'outfile is closed'"}, {'id': '47', 'type': 'if_statement', 'children': ['48', '49', '54']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'interactive'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'interactive'}, {'id': '53', 'type': 'string', 'children': [], 'value': "'-i'"}; {'id': '54', 'type': 'else_clause', 'children': ['55']}, {'id': '55', 'type': 'block', 'children': ['56']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'interactive'}, {'id': '59', 'type': 'string', 'children': [], 'value': "''"}; {'id': '60', 'type': 'if_statement', 'children': ['61', '64', '76']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'in'}; {'id': '62', 'type': 'string', 'children': [], 'value': "':'"}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'tool'}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'docker_tool'}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'string', 'children': [], 'value': "'/'"}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'list', 'children': ['74', '75'], 'value': '[dockerhub, tool]'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'dockerhub'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'tool'}; {'id': '76', 'type': 'else_clause', 'children': ['77']}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'docker_tool'}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'string', 'children': [], 'value': "''"}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'list', 'children': ['87', '88', '89', '90'], 'value': "[dockerhub, '/', tool, ':latest']"}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'dockerhub'}; {'id': '88', 'type': 'string', 'children': [], 'value': "'/'"}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'tool'}; {'id': '90', 'type': 'string', 'children': [], 'value': "':latest'"}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'call'}; {'id': '94', 'type': 'list', 'children': ['95', '96'], 'value': "['docker', 'images']"}, {'id': '95', 'type': 'string', 'children': [], 'value': "'docker'"}; {'id': '96', 'type': 'string', 'children': [], 'value': "'images'"}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'dimg_rv'}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'check_output'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'call'}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'existing_images'}, {'id': '109', 'type': 'list_comprehension', 'children': ['110', '125', '132']}; {'id': '110', 'type': 'call', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'string', 'children': [], 'value': "':'"}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'subscript', 'children': ['116', '121']}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '120', 'type': 'argument_list', 'children': []}, {'id': '121', 'type': 'slice', 'children': ['122', '123', '124']}; {'id': '122', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '123', 'type': 'colon', 'children': []}; {'id': '124', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '125', 'type': 'for_in_clause', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'dimg_rv'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'splitlines'}, {'id': '131', 'type': 'argument_list', 'children': []}; {'id': '132', 'type': 'if_clause', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'dockerhub'}, {'id': '139', 'type': 'if_statement', 'children': ['140', '143']}; {'id': '140', 'type': 'comparison_operator', 'children': ['141', '142'], 'value': 'not'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'docker_tool'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'existing_images'}, {'id': '143', 'type': 'block', 'children': ['144']}; {'id': '144', 'type': 'try_statement', 'children': ['145', '169', '197']}, {'id': '145', 'type': 'block', 'children': ['146', '162']}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'call'}, {'id': '149', 'type': 'call', 'children': ['150', '161']}; {'id': '150', 'type': 'attribute', 'children': ['151', '160']}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'list', 'children': ['157', '158', '159'], 'value': "['docker', 'pull', docker_tool]"}, {'id': '157', 'type': 'string', 'children': [], 'value': "'docker'"}; {'id': '158', 'type': 'string', 'children': [], 'value': "'pull'"}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'docker_tool'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '161', 'type': 'argument_list', 'children': []}; {'id': '162', 'type': 'expression_statement', 'children': ['163']}, {'id': '163', 'type': 'call', 'children': ['164', '167']}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'check_call'}, {'id': '167', 'type': 'argument_list', 'children': ['168']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'call'}, {'id': '169', 'type': 'except_clause', 'children': ['170', '176']}; {'id': '170', 'type': 'as_pattern', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'CalledProcessError'}; {'id': '174', 'type': 'as_pattern_target', 'children': ['175']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '176', 'type': 'block', 'children': ['177']}, {'id': '177', 'type': 'raise_statement', 'children': ['178']}; {'id': '178', 'type': 'call', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '180', 'type': 'argument_list', 'children': ['181']}, {'id': '181', 'type': 'binary_operator', 'children': ['182', '189'], 'value': '+'}; {'id': '182', 'type': 'binary_operator', 'children': ['183', '184'], 'value': '+'}, {'id': '183', 'type': 'string', 'children': [], 'value': "'docker command returned a non-zero exit status '"}; {'id': '184', 'type': 'binary_operator', 'children': ['185', '186'], 'value': '%'}, {'id': '185', 'type': 'string', 'children': [], 'value': "'(%s)'"}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'returncode'}, {'id': '189', 'type': 'binary_operator', 'children': ['190', '191'], 'value': '%'}; {'id': '190', 'type': 'string', 'children': [], 'value': '\'for command \\"%s\\"\''}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'call'}, {'id': '197', 'type': 'except_clause', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'OSError'}, {'id': '199', 'type': 'block', 'children': ['200']}; {'id': '200', 'type': 'raise_statement', 'children': ['201']}, {'id': '201', 'type': 'call', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}, {'id': '203', 'type': 'argument_list', 'children': ['204']}; {'id': '204', 'type': 'binary_operator', 'children': ['205', '206'], 'value': '+'}, {'id': '205', 'type': 'string', 'children': [], 'value': "'docker not found on system. Install on all'"}; {'id': '206', 'type': 'string', 'children': [], 'value': "' nodes.'"}, {'id': '207', 'type': 'if_statement', 'children': ['208', '209', '230']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'java_opts'}, {'id': '209', 'type': 'block', 'children': ['210']}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'assignment', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'base_docker_call'}, {'id': '213', 'type': 'binary_operator', 'children': ['214', '229'], 'value': '+'}; {'id': '214', 'type': 'binary_operator', 'children': ['215', '223'], 'value': '+'}, {'id': '215', 'type': 'binary_operator', 'children': ['216', '222'], 'value': '+'}; {'id': '216', 'type': 'call', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'string', 'children': [], 'value': "' docker run -e JAVA_OPTS=-Xmx{} '"}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'format'}; 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{'id': '236', 'type': 'binary_operator', 'children': ['237', '243'], 'value': '+'}, {'id': '237', 'type': 'call', 'children': ['238', '241']}; {'id': '238', 'type': 'attribute', 'children': ['239', '240']}, {'id': '239', 'type': 'string', 'children': [], 'value': "' docker run --rm=true -v {}:/data '"}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '241', 'type': 'argument_list', 'children': ['242']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '243', 'type': 'string', 'children': [], 'value': "'--log-driver=none '"}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'interactive'}, {'id': '245', 'type': 'expression_statement', 'children': ['246']}; {'id': '246', 'type': 'assignment', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'call'}; {'id': '248', 'type': 'binary_operator', 'children': ['249', '257'], 'value': '+'}, {'id': '249', 'type': 'binary_operator', 'children': ['250', '255'], 'value': '+'}; {'id': '250', 'type': 'call', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'base_docker_call'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '254', 'type': 'argument_list', 'children': []}, {'id': '255', 'type': 'list', 'children': ['256'], 'value': '[docker_tool]'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'docker_tool'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'tool_parameters'}; {'id': '258', 'type': 'try_statement', 'children': ['259', '270', '296']}, {'id': '259', 'type': 'block', 'children': ['260']}; {'id': '260', 'type': 'expression_statement', 'children': ['261']}, {'id': '261', 'type': 'call', 'children': ['262', '265']}; {'id': '262', 'type': 'attribute', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'check_call'}, {'id': '265', 'type': 'argument_list', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'call'}, {'id': '267', 'type': 'keyword_argument', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '270', 'type': 'except_clause', 'children': ['271', '277']}, {'id': '271', 'type': 'as_pattern', 'children': ['272', '275']}; {'id': '272', 'type': 'attribute', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'CalledProcessError'}, {'id': '275', 'type': 'as_pattern_target', 'children': ['276']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '277', 'type': 'block', 'children': ['278']}; {'id': '278', 'type': 'raise_statement', 'children': ['279']}, {'id': '279', 'type': 'call', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}, {'id': '281', 'type': 'argument_list', 'children': ['282']}; {'id': '282', 'type': 'binary_operator', 'children': ['283', '288'], 'value': '+'}, {'id': '283', 'type': 'binary_operator', 'children': ['284', '285'], 'value': '%'}; {'id': '284', 'type': 'string', 'children': [], 'value': "'docker command returned a non-zero exit status (%s)'"}, {'id': '285', 'type': 'attribute', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'returncode'}; {'id': '288', 'type': 'binary_operator', 'children': ['289', '290'], 'value': '%'}, {'id': '289', 'type': 'string', 'children': [], 'value': '\'for command \\"%s\\"\''}; {'id': '290', 'type': 'call', 'children': ['291', '294']}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'string', 'children': [], 'value': "' '"}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '294', 'type': 'argument_list', 'children': ['295']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'call'}; {'id': '296', 'type': 'except_clause', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'OSError'}; {'id': '298', 'type': 'block', 'children': ['299']}, {'id': '299', 'type': 'raise_statement', 'children': ['300']}; {'id': '300', 'type': 'call', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '302', 'type': 'argument_list', 'children': ['303']}, {'id': '303', 'type': 'string', 'children': [], 'value': "'docker not found on system. Install on all nodes.'"}

def docker_call(tool, tool_parameters, work_dir, java_opts=None, outfile=None, dockerhub='aarjunrao', interactive=False): if outfile: assert isinstance(outfile, file), 'outfile was not passsed a file' assert outfile.mode in ['w', 'a', 'wb', 'ab'], 'outfile not writeable' assert not outfile.closed, 'outfile is closed' if interactive: interactive = '-i' else: interactive = '' if ':' in tool: docker_tool = '/'.join([dockerhub, tool]) else: docker_tool = ''.join([dockerhub, '/', tool, ':latest']) call = ['docker', 'images'] dimg_rv = subprocess.check_output(call) existing_images = [':'.join(x.split()[0:2]) for x in dimg_rv.splitlines() if x.startswith(dockerhub)] if docker_tool not in existing_images: try: call = ' '.join(['docker', 'pull', docker_tool]).split() subprocess.check_call(call) except subprocess.CalledProcessError as err: raise RuntimeError('docker command returned a non-zero exit status ' + '(%s)' % err.returncode + 'for command \"%s\"' % ' '.join(call),) except OSError: raise RuntimeError('docker not found on system. Install on all' + ' nodes.') if java_opts: base_docker_call = ' docker run -e JAVA_OPTS=-Xmx{} '.format(java_opts) + '--rm=true ' + \ '-v {}:/data --log-driver=none '.format(work_dir) + interactive else: base_docker_call = ' docker run --rm=true -v {}:/data '.format(work_dir) + \ '--log-driver=none ' + interactive call = base_docker_call.split() + [docker_tool] + tool_parameters try: subprocess.check_call(call, stdout=outfile) except subprocess.CalledProcessError as err: raise RuntimeError('docker command returned a non-zero exit status (%s)' % err.returncode + 'for command \"%s\"' % ' '.join(call),) except OSError: raise RuntimeError('docker not found on system. Install on all nodes.')

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{'id': '14', 'type': 'call', 'children': ['15', '20']}, {'id': '15', 'type': 'attribute', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'getLocalTempDir'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'parsed_url'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'urlparse'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'gdc_url'}; {'id': '28', 'type': 'assert_statement', 'children': ['29', '34']}, {'id': '29', 'type': 'comparison_operator', 'children': ['30', '33'], 'value': '=='}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'parsed_url'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '33', 'type': 'string', 'children': [], 'value': "'gdc'"}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '36'], 'value': '%'}, {'id': '35', 'type': 'string', 'children': [], 'value': "'Unexpected url scheme: %s'"}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'gdc_url'}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'file_dir'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'string', 'children': [], 'value': "'/'"}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'list', 'children': ['46', '47'], 'value': '[work_dir, parsed_url.netloc]'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'parsed_url'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'netloc'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'currwd'}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'getcwd'}, {'id': '57', 'type': 'argument_list', 'children': []}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'chdir'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '65', 'type': 'try_statement', 'children': ['66', '85']}; {'id': '66', 'type': 'block', 'children': ['67', '78']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'download_call'}; {'id': '70', 'type': 'list', 'children': ['71', '72', '73', '74', '75'], 'value': "['gdc-client', 'download', '-t', gdc_download_token, parsed_url.netloc]"}, {'id': '71', 'type': 'string', 'children': [], 'value': "'gdc-client'"}; {'id': '72', 'type': 'string', 'children': [], 'value': "'download'"}, {'id': '73', 'type': 'string', 'children': [], 'value': "'-t'"}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'gdc_download_token'}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'parsed_url'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'netloc'}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'check_call'}, {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'download_call'}, {'id': '85', 'type': 'finally_clause', 'children': ['86']}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'chdir'}; 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{'id': '108', 'type': 'attribute', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '113', 'type': 'argument_list', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'file_dir'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '116', 'type': 'for_in_clause', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'listdir'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'file_dir'}; 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{'id': '156', 'type': 'call', 'children': ['157', '162']}, {'id': '157', 'type': 'attribute', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'splitext'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '164', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '165', 'type': 'for_in_clause', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'output_files'}; {'id': '168', 'type': 'set', 'children': ['169', '170']}, {'id': '169', 'type': 'string', 'children': [], 'value': "'.bam'"}; {'id': '170', 'type': 'string', 'children': [], 'value': "'.bai'"}, {'id': '171', 'type': 'block', 'children': ['172']}; 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{'id': '186', 'type': 'call', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'endswith'}; {'id': '190', 'type': 'argument_list', 'children': ['191']}, {'id': '191', 'type': 'tuple', 'children': ['192', '193']}; {'id': '192', 'type': 'string', 'children': [], 'value': "'bam'"}, {'id': '193', 'type': 'string', 'children': [], 'value': "'bai'"}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'assignment', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'output_files'}, {'id': '197', 'type': 'call', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '199', 'type': 'argument_list', 'children': ['200', '201', '216']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'output_files'}, {'id': '201', 'type': 'keyword_argument', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '203', 'type': 'lambda', 'children': ['204', '206']}; {'id': '204', 'type': 'lambda_parameters', 'children': ['205']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '206', 'type': 'subscript', 'children': ['207', '215']}, {'id': '207', 'type': 'call', 'children': ['208', '213']}; {'id': '208', 'type': 'attribute', 'children': ['209', '212']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'splitext'}, {'id': '213', 'type': 'argument_list', 'children': ['214']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '215', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '216', 'type': 'keyword_argument', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '218', 'type': 'True', 'children': []}, {'id': '219', 'type': 'if_statement', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'write_to_jobstore'}, {'id': '221', 'type': 'block', 'children': ['222']}; {'id': '222', 'type': 'expression_statement', 'children': ['223']}, {'id': '223', 'type': 'assignment', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'output_files'}, {'id': '225', 'type': 'list_comprehension', 'children': ['226', '234']}; {'id': '226', 'type': 'call', 'children': ['227', '232']}, {'id': '227', 'type': 'attribute', 'children': ['228', '231']}; {'id': '228', 'type': 'attribute', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}; {'id': '232', 'type': 'argument_list', 'children': ['233']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '234', 'type': 'for_in_clause', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'output_files'}, {'id': '237', 'type': 'return_statement', 'children': ['238']}

def get_file_from_gdc(job, gdc_url, gdc_download_token, write_to_jobstore=True): work_dir = job.fileStore.getLocalTempDir() parsed_url = urlparse(gdc_url) assert parsed_url.scheme == 'gdc', 'Unexpected url scheme: %s' % gdc_url file_dir = '/'.join([work_dir, parsed_url.netloc]) currwd = os.getcwd() os.chdir(work_dir) try: download_call = ['gdc-client', 'download', '-t', gdc_download_token, parsed_url.netloc] subprocess.check_call(download_call) finally: os.chdir(currwd) assert os.path.exists(file_dir) output_files = [os.path.join(file_dir, x) for x in os.listdir(file_dir) if not x.endswith('logs')] if len(output_files) == 1: assert output_files[0].endswith('vcf') else: if not {os.path.splitext(x)[1] for x in output_files} >= {'.bam', '.bai'}: raise ParameterError('Can currently only handle pre-indexed GDC bams.') output_files = [x for x in output_files if x.endswith(('bam', 'bai'))] output_files = sorted(output_files, key=lambda x: os.path.splitext(x)[1], reverse=True) if write_to_jobstore: output_files = [job.fileStore.writeGlobalFile(f) for f in output_files] return output_files

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{'id': '16', 'type': 'lambda_parameters', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'o'}; {'id': '18', 'type': 'None', 'children': []}, {'id': '19', 'type': 'if_statement', 'children': ['20', '24']}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'is_hashable'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '24', 'type': 'block', 'children': ['25']}, {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'expression_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ftype'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '38']}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '46', 'type': 'if_statement', 'children': ['47', '54']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '51', 'type': 'tuple', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '54', 'type': 'block', 'children': ['55']}, {'id': '55', 'type': 'return_statement', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '58', 'type': 'generator_expression', 'children': ['59', '64']}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'make_key_hippie'}, {'id': '61', 'type': 'argument_list', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'typed'}; {'id': '64', 'type': 'for_in_clause', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '67', 'type': 'if_statement', 'children': ['68', '73']}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'return_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'generator_expression', 'children': ['82', '93']}; {'id': '82', 'type': 'tuple', 'children': ['83', '88']}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'make_key_hippie'}, {'id': '85', 'type': 'argument_list', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'typed'}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'make_key_hippie'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'typed'}, {'id': '93', 'type': 'for_in_clause', 'children': ['94', '97']}; {'id': '94', 'type': 'pattern_list', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '101', 'type': 'argument_list', 'children': []}; {'id': '102', 'type': 'raise_statement', 'children': ['103']}, {'id': '103', 'type': 'call', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '105', 'type': 'argument_list', 'children': ['106']}; {'id': '106', 'type': 'binary_operator', 'children': ['107', '108'], 'value': '%'}, {'id': '107', 'type': 'string', 'children': [], 'value': '"%r can not be hashed. Try providing a custom key function."'}

def make_key_hippie(obj, typed=True): ftype = type if typed else lambda o: None if is_hashable(obj): return obj, ftype(obj) if isinstance(obj, set): obj = sorted(obj) if isinstance(obj, (list, tuple)): return tuple(make_key_hippie(e, typed) for e in obj) if isinstance(obj, dict): return tuple(sorted(((make_key_hippie(k, typed), make_key_hippie(v, typed)) for k, v in obj.items()))) raise ValueError( "%r can not be hashed. Try providing a custom key function." % obj)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run_radia'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'tumor_bam'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'normal_bam'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'radia_options'}; {'id': '10', 'type': 'block', 'children': ['11', '48', '82', '105', '111', '198', '211']}, {'id': '11', 'type': 'if_statement', 'children': ['12', '19', '26', '41']}; {'id': '12', 'type': 'comparison_operator', 'children': ['13', '14'], 'value': 'in'}, {'id': '13', 'type': 'string', 'children': [], 'value': "'rna_genome'"}; {'id': '14', 'type': 'call', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '18', 'type': 'argument_list', 'children': []}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}, {'id': '23', 'type': 'subscript', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}, {'id': '25', 'type': 'string', 'children': [], 'value': "'rna_genome'"}; {'id': '26', 'type': 'elif_clause', 'children': ['27', '39']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '36'], 'value': '=='}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '35', 'type': 'argument_list', 'children': []}; {'id': '36', 'type': 'set', 'children': ['37', '38']}, {'id': '37', 'type': 'string', 'children': [], 'value': "'rna_genome_sorted.bam'"}; {'id': '38', 'type': 'string', 'children': [], 'value': "'rna_genome_sorted.bam.bai'"}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'pass_statement', 'children': []}, {'id': '41', 'type': 'else_clause', 'children': ['42']}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'raise_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'string', 'children': [], 'value': "'An improperly formatted dict was passed to rna_bam.'"}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'bams'}, {'id': '51', 'type': 'dictionary', 'children': ['52', '57', '62', '67', '72', '77']}; {'id': '52', 'type': 'pair', 'children': ['53', '54']}, {'id': '53', 'type': 'string', 'children': [], 'value': "'tumor_rna'"}; {'id': '54', 'type': 'subscript', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}; {'id': '56', 'type': 'string', 'children': [], 'value': "'rna_genome_sorted.bam'"}, {'id': '57', 'type': 'pair', 'children': ['58', '59']}; {'id': '58', 'type': 'string', 'children': [], 'value': "'tumor_rnai'"}, {'id': '59', 'type': 'subscript', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'rna_genome_sorted.bam.bai'"}; {'id': '62', 'type': 'pair', 'children': ['63', '64']}, {'id': '63', 'type': 'string', 'children': [], 'value': "'tumor_dna'"}; {'id': '64', 'type': 'subscript', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'tumor_bam'}; {'id': '66', 'type': 'string', 'children': [], 'value': "'tumor_dna_fix_pg_sorted.bam'"}, {'id': '67', 'type': 'pair', 'children': ['68', '69']}; {'id': '68', 'type': 'string', 'children': [], 'value': "'tumor_dnai'"}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'tumor_bam'}, {'id': '71', 'type': 'string', 'children': [], 'value': "'tumor_dna_fix_pg_sorted.bam.bai'"}; {'id': '72', 'type': 'pair', 'children': ['73', '74']}, {'id': '73', 'type': 'string', 'children': [], 'value': "'normal_dna'"}; {'id': '74', 'type': 'subscript', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'normal_bam'}; {'id': '76', 'type': 'string', 'children': [], 'value': "'normal_dna_fix_pg_sorted.bam'"}, {'id': '77', 'type': 'pair', 'children': ['78', '79']}; {'id': '78', 'type': 'string', 'children': [], 'value': "'normal_dnai'"}, {'id': '79', 'type': 'subscript', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'normal_bam'}, {'id': '81', 'type': 'string', 'children': [], 'value': "'normal_dna_fix_pg_sorted.bam.bai'"}; {'id': '82', 'type': 'if_statement', 'children': ['83', '86', '93']}, {'id': '83', 'type': 'subscript', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'radia_options'}, {'id': '85', 'type': 'string', 'children': [], 'value': "'chromosomes'"}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'chromosomes'}; {'id': '90', 'type': 'subscript', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'radia_options'}; {'id': '92', 'type': 'string', 'children': [], 'value': "'chromosomes'"}, {'id': '93', 'type': 'else_clause', 'children': ['94']}; {'id': '94', 'type': 'block', 'children': ['95']}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'assignment', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'chromosomes'}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'sample_chromosomes'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '102', 'type': 'subscript', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'radia_options'}; {'id': '104', 'type': 'string', 'children': [], 'value': "'genome_fai'"}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'perchrom_radia'}; {'id': '108', 'type': 'call', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '110', 'type': 'argument_list', 'children': []}, {'id': '111', 'type': 'for_statement', 'children': ['112', '113', '114']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'chromosomes'}; {'id': '114', 'type': 'block', 'children': ['115', '149', '188']}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'radia'}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'addChildJobFn'}; {'id': '122', 'type': 'argument_list', 'children': ['123', '124', '125', '126', '127', '128', '131']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'run_radia_perchrom'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'bams'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'radia_options'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'chrom'}; {'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'memory'}; {'id': '130', 'type': 'string', 'children': [], 'value': "'6G'"}, {'id': '131', 'type': 'keyword_argument', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '133', 'type': 'call', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}, {'id': '135', 'type': 'argument_list', 'children': ['136', '137', '140', '143', '146']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'radia_disk'}, {'id': '137', 'type': 'subscript', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'tumor_bam'}, {'id': '139', 'type': 'string', 'children': [], 'value': "'tumor_dna_fix_pg_sorted.bam'"}; {'id': '140', 'type': 'subscript', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'normal_bam'}; {'id': '142', 'type': 'string', 'children': [], 'value': "'normal_dna_fix_pg_sorted.bam'"}, {'id': '143', 'type': 'subscript', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}, {'id': '145', 'type': 'string', 'children': [], 'value': "'rna_genome_sorted.bam'"}; {'id': '146', 'type': 'subscript', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'radia_options'}; {'id': '148', 'type': 'string', 'children': [], 'value': "'genome_fasta'"}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'filter_radia'}; {'id': '152', 'type': 'call', 'children': ['153', '156']}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'radia'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'addChildJobFn'}; {'id': '156', 'type': 'argument_list', 'children': ['157', '158', '159', '164', '165', '166', '167', '170']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'run_filter_radia'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'bams'}, {'id': '159', 'type': 'call', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'radia'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '163', 'type': 'argument_list', 'children': []}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'radia_options'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '167', 'type': 'keyword_argument', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'memory'}, {'id': '169', 'type': 'string', 'children': [], 'value': "'6G'"}; {'id': '170', 'type': 'keyword_argument', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'disk'}; {'id': '172', 'type': 'call', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}; {'id': '174', 'type': 'argument_list', 'children': ['175', '176', '179', '182', '185']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'radia_disk'}; {'id': '176', 'type': 'subscript', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'tumor_bam'}; {'id': '178', 'type': 'string', 'children': [], 'value': "'tumor_dna_fix_pg_sorted.bam'"}, {'id': '179', 'type': 'subscript', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'normal_bam'}, {'id': '181', 'type': 'string', 'children': [], 'value': "'normal_dna_fix_pg_sorted.bam'"}; {'id': '182', 'type': 'subscript', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'rna_bam'}; {'id': '184', 'type': 'string', 'children': [], 'value': "'rna_genome_sorted.bam'"}, {'id': '185', 'type': 'subscript', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'radia_options'}, {'id': '187', 'type': 'string', 'children': [], 'value': "'genome_fasta'"}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'assignment', 'children': ['190', '193']}; {'id': '190', 'type': 'subscript', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'perchrom_radia'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '193', 'type': 'call', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'filter_radia'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '197', 'type': 'argument_list', 'children': []}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'call', 'children': ['200', '205']}; {'id': '200', 'type': 'attribute', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'logToMaster'}, {'id': '205', 'type': 'argument_list', 'children': ['206']}; {'id': '206', 'type': 'binary_operator', 'children': ['207', '208'], 'value': '%'}, {'id': '207', 'type': 'string', 'children': [], 'value': "'Ran spawn_radia on %s successfully'"}; {'id': '208', 'type': 'subscript', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '210', 'type': 'string', 'children': [], 'value': "'patient'"}, {'id': '211', 'type': 'return_statement', 'children': ['212']}

def run_radia(job, rna_bam, tumor_bam, normal_bam, univ_options, radia_options): if 'rna_genome' in rna_bam.keys(): rna_bam = rna_bam['rna_genome'] elif set(rna_bam.keys()) == {'rna_genome_sorted.bam', 'rna_genome_sorted.bam.bai'}: pass else: raise RuntimeError('An improperly formatted dict was passed to rna_bam.') bams = {'tumor_rna': rna_bam['rna_genome_sorted.bam'], 'tumor_rnai': rna_bam['rna_genome_sorted.bam.bai'], 'tumor_dna': tumor_bam['tumor_dna_fix_pg_sorted.bam'], 'tumor_dnai': tumor_bam['tumor_dna_fix_pg_sorted.bam.bai'], 'normal_dna': normal_bam['normal_dna_fix_pg_sorted.bam'], 'normal_dnai': normal_bam['normal_dna_fix_pg_sorted.bam.bai']} if radia_options['chromosomes']: chromosomes = radia_options['chromosomes'] else: chromosomes = sample_chromosomes(job, radia_options['genome_fai']) perchrom_radia = defaultdict() for chrom in chromosomes: radia = job.addChildJobFn(run_radia_perchrom, bams, univ_options, radia_options, chrom, memory='6G', disk=PromisedRequirement( radia_disk, tumor_bam['tumor_dna_fix_pg_sorted.bam'], normal_bam['normal_dna_fix_pg_sorted.bam'], rna_bam['rna_genome_sorted.bam'], radia_options['genome_fasta'])) filter_radia = radia.addChildJobFn(run_filter_radia, bams, radia.rv(), univ_options, radia_options, chrom, memory='6G', disk=PromisedRequirement( radia_disk, tumor_bam['tumor_dna_fix_pg_sorted.bam'], normal_bam['normal_dna_fix_pg_sorted.bam'], rna_bam['rna_genome_sorted.bam'], radia_options['genome_fasta'])) perchrom_radia[chrom] = filter_radia.rv() job.fileStore.logToMaster('Ran spawn_radia on %s successfully' % univ_options['patient']) return perchrom_radia

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def sort_bamfile(job, bamfile, sample_type, univ_options, samtools_options): work_dir = os.getcwd() in_bamfile = ''.join([sample_type, '.bam']) out_bamfile = '_'.join([sample_type, 'sorted.bam']) input_files = { in_bamfile: bamfile} input_files = get_files_from_filestore(job, input_files, work_dir, docker=True) parameters = ['sort', '-o', docker_path(out_bamfile), '-O', 'bam', '-T', 'temp_sorted', '-@', str(samtools_options['n']), input_files[in_bamfile]] docker_call(tool='samtools', tool_parameters=parameters, work_dir=work_dir, dockerhub=univ_options['dockerhub'], tool_version=samtools_options['version']) job.fileStore.deleteGlobalFile(bamfile) job.fileStore.logToMaster('Ran samtools-sort on %s:%s successfully' % (univ_options['patient'], sample_type)) return job.fileStore.writeGlobalFile(out_bamfile)

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{'id': '144', 'type': 'list', 'children': ['145'], 'value': '[\n recursive_sort(\n data_structure[-1]\n )\n ]'}, {'id': '145', 'type': 'call', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'recursive_sort'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'subscript', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'data_structure'}; {'id': '150', 'type': 'unary_operator', 'children': ['151'], 'value': '-'}, {'id': '151', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '152', 'type': 'else_clause', 'children': ['153']}, {'id': '153', 'type': 'block', 'children': ['154']}; {'id': '154', 'type': 'return_statement', 'children': ['155']}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'call', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '160', 'type': 'argument_list', 'children': ['161', '169']}, {'id': '161', 'type': 'list_comprehension', 'children': ['162', '166']}; {'id': '162', 'type': 'call', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'recursive_sort'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '166', 'type': 'for_in_clause', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'data_structure'}, {'id': '169', 'type': 'keyword_argument', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'TraversalBasedReprCompare'}; {'id': '172', 'type': 'except_clause', 'children': ['173']}, {'id': '173', 'type': 'block', 'children': ['174']}; {'id': '174', 'type': 'pass_statement', 'children': []}, {'id': '175', 'type': 'return_statement', 'children': ['176']}

def recursive_sort(data_structure): if not isinstance(data_structure, _primitive_types): is_meta = isinstance(data_structure, Meta) was_dict = isinstance(data_structure, WasDict) if not (is_meta or was_dict): was_dict = isinstance(data_structure, dict) if not was_dict: try: data_structure = data_structure.__dict__ was_dict = True except: pass try: data_structure = data_structure.items() except: pass tlen = -1 try: tlen = len(data_structure) except: pass if tlen != -1: try: if was_dict: return tuple(sorted( [ ( recursive_sort(x[0]), recursive_sort(x[1]), ) for x in data_structure ], key=TraversalBasedReprCompare )) elif is_meta: return data_structure[0:-1] + [ recursive_sort( data_structure[-1] ) ] else: return tuple(sorted( [recursive_sort( x, ) for x in data_structure], key=TraversalBasedReprCompare, )) except: pass return data_structure

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'tree_diff'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '5'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '11', 'type': 'False', 'children': []}; {'id': '12', 'type': 'block', 'children': ['13', '20', '27', '87']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'dump'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'dump'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '30', '55']}; {'id': '28', 'type': 'not_operator', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '30', 'type': 'block', 'children': ['31', '43']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '34', 'type': 'call', 'children': ['35', '41']}, {'id': '35', 'type': 'attribute', 'children': ['36', '40']}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'vformat'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '46', 'type': 'call', 'children': ['47', '53']}, {'id': '47', 'type': 'attribute', 'children': ['48', '52']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'vformat'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '55', 'type': 'else_clause', 'children': ['56']}; {'id': '56', 'type': 'block', 'children': ['57', '72']}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '60', 'type': 'call', 'children': ['61', '70']}, {'id': '61', 'type': 'attribute', 'children': ['62', '69']}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'vformat'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'recursive_sort'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '75', 'type': 'call', 'children': ['76', '85']}; {'id': '76', 'type': 'attribute', 'children': ['77', '84']}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'vformat'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'recursive_sort'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '87', 'type': 'return_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'difflib'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'unified_diff'}, {'id': '97', 'type': 'argument_list', 'children': ['98', '99', '100', '103']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '100', 'type': 'keyword_argument', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '103', 'type': 'keyword_argument', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'lineterm'}, {'id': '105', 'type': 'string', 'children': [], 'value': '""'}

def tree_diff(a, b, n=5, sort=False): a = dump(a) b = dump(b) if not sort: a = vformat(a).split("\n") b = vformat(b).split("\n") else: a = vformat(recursive_sort(a)).split("\n") b = vformat(recursive_sort(b)).split("\n") return "\n".join(difflib.unified_diff(a, b, n=n, lineterm=""))

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'merge_perchrom_mutations'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'chrom'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'mutations'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '8', 'type': 'block', 'children': ['9', '17', '24', '31', '38', '45', '52', '59', '69', '79', '107', '117', '124', '305', '401', '414', '427']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'getcwd'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'import_from_statement', 'children': ['18', '22']}; {'id': '18', 'type': 'dotted_name', 'children': ['19', '20', '21']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'protect'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'mutation_calling'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'muse'}; {'id': '22', 'type': 'dotted_name', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'process_muse_vcf'}; {'id': '24', 'type': 'import_from_statement', 'children': ['25', '29']}, {'id': '25', 'type': 'dotted_name', 'children': ['26', '27', '28']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'protect'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'mutation_calling'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'mutect'}, {'id': '29', 'type': 'dotted_name', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'process_mutect_vcf'}, {'id': '31', 'type': 'import_from_statement', 'children': ['32', '36']}; {'id': '32', 'type': 'dotted_name', 'children': ['33', '34', '35']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'protect'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'mutation_calling'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'radia'}; {'id': '36', 'type': 'dotted_name', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'process_radia_vcf'}; {'id': '38', 'type': 'import_from_statement', 'children': ['39', '43']}, {'id': '39', 'type': 'dotted_name', 'children': ['40', '41', '42']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'protect'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'mutation_calling'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'somaticsniper'}, {'id': '43', 'type': 'dotted_name', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'process_somaticsniper_vcf'}, {'id': '45', 'type': 'import_from_statement', 'children': ['46', '50']}; {'id': '46', 'type': 'dotted_name', 'children': ['47', '48', '49']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'protect'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'mutation_calling'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'strelka'}; {'id': '50', 'type': 'dotted_name', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'process_strelka_vcf'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'mutations'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'string', 'children': [], 'value': "'indels'"}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '64']}, {'id': '61', 'type': 'subscript', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'mutations'}, {'id': '63', 'type': 'string', 'children': [], 'value': "'strelka_indels'"}; {'id': '64', 'type': 'subscript', 'children': ['65', '68']}, {'id': '65', 'type': 'subscript', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'mutations'}, {'id': '67', 'type': 'string', 'children': [], 'value': "'strelka'"}; {'id': '68', 'type': 'string', 'children': [], 'value': "'indels'"}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '74']}, {'id': '71', 'type': 'subscript', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'mutations'}, {'id': '73', 'type': 'string', 'children': [], 'value': "'strelka_snvs'"}; {'id': '74', 'type': 'subscript', 'children': ['75', '78']}, {'id': '75', 'type': 'subscript', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'mutations'}, {'id': '77', 'type': 'string', 'children': [], 'value': "'strelka'"}; {'id': '78', 'type': 'string', 'children': [], 'value': "'snvs'"}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'vcf_processor'}; {'id': '82', 'type': 'dictionary', 'children': ['83', '101']}, {'id': '83', 'type': 'pair', 'children': ['84', '85']}; {'id': '84', 'type': 'string', 'children': [], 'value': "'snvs'"}, {'id': '85', 'type': 'dictionary', 'children': ['86', '89', '92', '95', '98']}; {'id': '86', 'type': 'pair', 'children': ['87', '88']}, {'id': '87', 'type': 'string', 'children': [], 'value': "'mutect'"}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'process_mutect_vcf'}, {'id': '89', 'type': 'pair', 'children': ['90', '91']}; {'id': '90', 'type': 'string', 'children': [], 'value': "'muse'"}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'process_muse_vcf'}; {'id': '92', 'type': 'pair', 'children': ['93', '94']}, {'id': '93', 'type': 'string', 'children': [], 'value': "'radia'"}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'process_radia_vcf'}, {'id': '95', 'type': 'pair', 'children': ['96', '97']}; {'id': '96', 'type': 'string', 'children': [], 'value': "'somaticsniper'"}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'process_somaticsniper_vcf'}; {'id': '98', 'type': 'pair', 'children': ['99', '100']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'strelka_snvs'"}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'process_strelka_vcf'}, {'id': '101', 'type': 'pair', 'children': ['102', '103']}; {'id': '102', 'type': 'string', 'children': [], 'value': "'indels'"}, {'id': '103', 'type': 'dictionary', 'children': ['104']}; {'id': '104', 'type': 'pair', 'children': ['105', '106']}, {'id': '105', 'type': 'string', 'children': [], 'value': "'strelka_indels'"}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'process_strelka_vcf'}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'majority'}; {'id': '110', 'type': 'dictionary', 'children': ['111', '114']}, {'id': '111', 'type': 'pair', 'children': ['112', '113']}; {'id': '112', 'type': 'string', 'children': [], 'value': "'snvs'"}, {'id': '113', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '114', 'type': 'pair', 'children': ['115', '116']}, {'id': '115', 'type': 'string', 'children': [], 'value': "'indels'"}; {'id': '116', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'assignment', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'accepted_hits'}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '124', 'type': 'for_statement', 'children': ['125', '126', '131']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'mut_type'}; {'id': '126', 'type': 'call', 'children': ['127', '130']}, {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'vcf_processor'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '130', 'type': 'argument_list', 'children': []}, {'id': '131', 'type': 'block', 'children': ['132', '158', '168', '177', '196', '216']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'perchrom_mutations'}, {'id': '135', 'type': 'dictionary_comprehension', 'children': ['136', '153']}; {'id': '136', 'type': 'pair', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'caller'}; {'id': '138', 'type': 'call', 'children': ['139', '144']}, {'id': '139', 'type': 'subscript', 'children': ['140', '143']}; {'id': '140', 'type': 'subscript', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'vcf_processor'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'mut_type'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'caller'}; {'id': '144', 'type': 'argument_list', 'children': ['145', '146', '151', '152']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '146', 'type': 'subscript', 'children': ['147', '150']}, {'id': '147', 'type': 'subscript', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'mutations'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'caller'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'univ_options'}, {'id': '153', 'type': 'for_in_clause', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'caller'}, {'id': '155', 'type': 'subscript', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'vcf_processor'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'mut_type'}; {'id': '158', 'type': 'expression_statement', 'children': ['159']}, {'id': '159', 'type': 'assignment', 'children': ['160', '163']}; {'id': '160', 'type': 'subscript', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'perchrom_mutations'}; {'id': '162', 'type': 'string', 'children': [], 'value': "'strelka'"}, {'id': '163', 'type': 'subscript', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'perchrom_mutations'}, {'id': '165', 'type': 'binary_operator', 'children': ['166', '167'], 'value': '+'}; {'id': '166', 'type': 'string', 'children': [], 'value': "'strelka_'"}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'mut_type'}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'call', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'perchrom_mutations'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '173', 'type': 'argument_list', 'children': ['174']}; {'id': '174', 'type': 'binary_operator', 'children': ['175', '176'], 'value': '+'}, {'id': '175', 'type': 'string', 'children': [], 'value': "'strelka_'"}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'mut_type'}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'assignment', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'vcf_lists'}; {'id': '180', 'type': 'dictionary_comprehension', 'children': ['181', '187']}, {'id': '181', 'type': 'pair', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'caller'}, {'id': '183', 'type': 'call', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'read_vcf'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'vcf_file'}, {'id': '187', 'type': 'for_in_clause', 'children': ['188', '191']}; {'id': '188', 'type': 'pattern_list', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'caller'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'vcf_file'}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'perchrom_mutations'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '195', 'type': 'argument_list', 'children': []}; {'id': '196', 'type': 'expression_statement', 'children': ['197']}, {'id': '197', 'type': 'assignment', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'all_positions'}, {'id': '199', 'type': 'call', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '201', 'type': 'argument_list', 'children': ['202']}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'call', 'children': ['206', '209']}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'itertools'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'chain'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'list_splat', 'children': ['211']}, {'id': '211', 'type': 'call', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'vcf_lists'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '215', 'type': 'argument_list', 'children': []}; {'id': '216', 'type': 'for_statement', 'children': ['217', '218', '222']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'position'}; {'id': '218', 'type': 'call', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'all_positions'}; {'id': '222', 'type': 'block', 'children': ['223', '241']}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'assignment', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'hits'}; {'id': '226', 'type': 'dictionary_comprehension', 'children': ['227', '234']}, {'id': '227', 'type': 'pair', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'caller'}, {'id': '229', 'type': 'comparison_operator', 'children': ['230', '231'], 'value': 'in'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'position'}, {'id': '231', 'type': 'subscript', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'vcf_lists'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'caller'}; {'id': '234', 'type': 'for_in_clause', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'caller'}; {'id': '236', 'type': 'call', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'perchrom_mutations'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '240', 'type': 'argument_list', 'children': []}, {'id': '241', 'type': 'if_statement', 'children': ['242', '254']}; {'id': '242', 'type': 'comparison_operator', 'children': ['243', '251'], 'value': '>='}, {'id': '243', 'type': 'call', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '245', 'type': 'argument_list', 'children': ['246']}; {'id': '246', 'type': 'call', 'children': ['247', '250']}, {'id': '247', 'type': 'attribute', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'hits'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '250', 'type': 'argument_list', 'children': []}, {'id': '251', 'type': 'subscript', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'majority'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'mut_type'}; {'id': '254', 'type': 'block', 'children': ['255', '276', '286']}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'assignment', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'callers'}; {'id': '258', 'type': 'call', 'children': ['259', '262']}, {'id': '259', 'type': 'attribute', 'children': ['260', '261']}; {'id': '260', 'type': 'string', 'children': [], 'value': "','"}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '262', 'type': 'argument_list', 'children': ['263']}, {'id': '263', 'type': 'list_comprehension', 'children': ['264', '265', '274']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'caller'}, {'id': '265', 'type': 'for_in_clause', 'children': ['266', '269']}; {'id': '266', 'type': 'pattern_list', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'caller'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'hit'}, {'id': '269', 'type': 'call', 'children': ['270', '273']}; {'id': '270', 'type': 'attribute', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'hits'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '273', 'type': 'argument_list', 'children': []}; {'id': '274', 'type': 'if_clause', 'children': ['275']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'hit'}; {'id': '276', 'type': 'assert_statement', 'children': ['277']}, {'id': '277', 'type': 'comparison_operator', 'children': ['278', '281'], 'value': 'not'}; {'id': '278', 'type': 'subscript', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'position'}; {'id': '280', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '281', 'type': 'subscript', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'accepted_hits'}, {'id': '283', 'type': 'subscript', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'position'}, {'id': '285', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '286', 'type': 'expression_statement', 'children': ['287']}, {'id': '287', 'type': 'assignment', 'children': ['288', '297']}; {'id': '288', 'type': 'subscript', 'children': ['289', '294']}, {'id': '289', 'type': 'subscript', 'children': ['290', '291']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'accepted_hits'}, {'id': '291', 'type': 'subscript', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'position'}, {'id': '293', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '294', 'type': 'subscript', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'position'}; {'id': '296', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '297', 'type': 'tuple', 'children': ['298', '301', '304']}; {'id': '298', 'type': 'subscript', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'position'}; {'id': '300', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '301', 'type': 'subscript', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'position'}, {'id': '303', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'callers'}, {'id': '305', 'type': 'with_statement', 'children': ['306', '325']}; {'id': '306', 'type': 'with_clause', 'children': ['307']}, {'id': '307', 'type': 'with_item', 'children': ['308']}; {'id': '308', 'type': 'as_pattern', 'children': ['309', '323']}, {'id': '309', 'type': 'call', 'children': ['310', '311']}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '311', 'type': 'argument_list', 'children': ['312', '322']}; {'id': '312', 'type': 'call', 'children': ['313', '316']}, {'id': '313', 'type': 'attribute', 'children': ['314', '315']}; {'id': '314', 'type': 'string', 'children': [], 'value': "''"}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '316', 'type': 'argument_list', 'children': ['317']}, {'id': '317', 'type': 'list', 'children': ['318', '319', '320', '321'], 'value': "[work_dir, '/', chrom, '.vcf']"}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '319', 'type': 'string', 'children': [], 'value': "'/'"}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '321', 'type': 'string', 'children': [], 'value': "'.vcf'"}; {'id': '322', 'type': 'string', 'children': [], 'value': "'w'"}, {'id': '323', 'type': 'as_pattern_target', 'children': ['324']}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '325', 'type': 'block', 'children': ['326', '334']}; {'id': '326', 'type': 'expression_statement', 'children': ['327']}, {'id': '327', 'type': 'call', 'children': ['328', '329']}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '329', 'type': 'argument_list', 'children': ['330', '331']}; {'id': '330', 'type': 'string', 'children': [], 'value': "'\n print('"}, {'id': '331', 'type': 'ERROR', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '334', 'type': 'expression_statement', 'children': ['335']}, {'id': '335', 'type': 'assignment', 'children': ['336', '337', '350', '352']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '337', 'type': 'ERROR', 'children': ['338', '340']}; {'id': '338', 'type': 'ERROR', 'children': ['339']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'for'}; {'id': '340', 'type': 'comparison_operator', 'children': ['341', '342'], 'value': 'in'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'chrom'}; {'id': '342', 'type': 'call', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'chrom_sorted'}; {'id': '344', 'type': 'argument_list', 'children': ['345']}, {'id': '345', 'type': 'call', 'children': ['346', '349']}; {'id': '346', 'type': 'attribute', 'children': ['347', '348']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'accepted_hits'}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '349', 'type': 'argument_list', 'children': []}; {'id': '350', 'type': 'ERROR', 'children': ['351']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'for'}; {'id': '352', 'type': 'type', 'children': ['353']}, {'id': '353', 'type': 'constrained_type', 'children': ['354', '363']}; {'id': '354', 'type': 'type', 'children': ['355']}, {'id': '355', 'type': 'comparison_operator', 'children': ['356', '357'], 'value': 'in'}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'position'}, {'id': '357', 'type': 'call', 'children': ['358', '359']}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '359', 'type': 'argument_list', 'children': ['360']}; {'id': '360', 'type': 'subscript', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'accepted_hits'}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '363', 'type': 'type', 'children': ['364']}; {'id': '364', 'type': 'call', 'children': ['365', '366']}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '366', 'type': 'argument_list', 'children': ['367', '368', '369', '370', '377', '384', '385', '386', '395', '398']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'chrom'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'position'}, {'id': '369', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '370', 'type': 'subscript', 'children': ['371', '376']}, {'id': '371', 'type': 'subscript', 'children': ['372', '375']}; {'id': '372', 'type': 'subscript', 'children': ['373', '374']}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'accepted_hits'}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '375', 'type': 'identifier', 'children': [], 'value': 'position'}; {'id': '376', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '377', 'type': 'subscript', 'children': ['378', '383']}; {'id': '378', 'type': 'subscript', 'children': ['379', '382']}, {'id': '379', 'type': 'subscript', 'children': ['380', '381']}; {'id': '380', 'type': 'identifier', 'children': [], 'value': 'accepted_hits'}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'chrom'}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'position'}, {'id': '383', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '384', 'type': 'string', 'children': [], 'value': "'.'"}, {'id': '385', 'type': 'string', 'children': [], 'value': "'PASS'"}; {'id': '386', 'type': 'binary_operator', 'children': ['387', '388'], 'value': '+'}, {'id': '387', 'type': 'string', 'children': [], 'value': "'callers='"}; {'id': '388', 'type': 'subscript', 'children': ['389', '394']}, {'id': '389', 'type': 'subscript', 'children': ['390', '393']}; {'id': '390', 'type': 'subscript', 'children': ['391', '392']}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'accepted_hits'}; {'id': '392', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '393', 'type': 'identifier', 'children': [], 'value': 'position'}; {'id': '394', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '395', 'type': 'keyword_argument', 'children': ['396', '397']}; {'id': '396', 'type': 'identifier', 'children': [], 'value': 'sep'}, {'id': '397', 'type': 'string', 'children': [], 'value': "'\\t'"}; {'id': '398', 'type': 'keyword_argument', 'children': ['399', '400']}, {'id': '399', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '400', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '401', 'type': 'expression_statement', 'children': ['402']}; {'id': '402', 'type': 'assignment', 'children': ['403', '404']}, {'id': '403', 'type': 'identifier', 'children': [], 'value': 'fsid'}; {'id': '404', 'type': 'call', 'children': ['405', '410']}, {'id': '405', 'type': 'attribute', 'children': ['406', '409']}; {'id': '406', 'type': 'attribute', 'children': ['407', '408']}, {'id': '407', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '408', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '409', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}; {'id': '410', 'type': 'argument_list', 'children': ['411']}, {'id': '411', 'type': 'attribute', 'children': ['412', '413']}; {'id': '412', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '413', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '414', 'type': 'expression_statement', 'children': ['415']}, {'id': '415', 'type': 'call', 'children': ['416', '417']}; {'id': '416', 'type': 'identifier', 'children': [], 'value': 'export_results'}, {'id': '417', 'type': 'argument_list', 'children': ['418', '419', '420', '423', '424']}; {'id': '418', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '419', 'type': 'identifier', 'children': [], 'value': 'fsid'}; {'id': '420', 'type': 'attribute', 'children': ['421', '422']}, {'id': '421', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '422', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '423', 'type': 'identifier', 'children': [], 'value': 'univ_options'}; {'id': '424', 'type': 'keyword_argument', 'children': ['425', '426']}, {'id': '425', 'type': 'identifier', 'children': [], 'value': 'subfolder'}; {'id': '426', 'type': 'string', 'children': [], 'value': "'mutations/merged'"}, {'id': '427', 'type': 'return_statement', 'children': ['428']}

def merge_perchrom_mutations(job, chrom, mutations, univ_options): work_dir = os.getcwd() from protect.mutation_calling.muse import process_muse_vcf from protect.mutation_calling.mutect import process_mutect_vcf from protect.mutation_calling.radia import process_radia_vcf from protect.mutation_calling.somaticsniper import process_somaticsniper_vcf from protect.mutation_calling.strelka import process_strelka_vcf mutations.pop('indels') mutations['strelka_indels'] = mutations['strelka']['indels'] mutations['strelka_snvs'] = mutations['strelka']['snvs'] vcf_processor = {'snvs': {'mutect': process_mutect_vcf, 'muse': process_muse_vcf, 'radia': process_radia_vcf, 'somaticsniper': process_somaticsniper_vcf, 'strelka_snvs': process_strelka_vcf }, 'indels': {'strelka_indels': process_strelka_vcf } } majority = {'snvs': 2, 'indels': 1} accepted_hits = defaultdict(dict) for mut_type in vcf_processor.keys(): perchrom_mutations = {caller: vcf_processor[mut_type][caller](job, mutations[caller][chrom], work_dir, univ_options) for caller in vcf_processor[mut_type]} perchrom_mutations['strelka'] = perchrom_mutations['strelka_' + mut_type] perchrom_mutations.pop('strelka_' + mut_type) vcf_lists = {caller: read_vcf(vcf_file) for caller, vcf_file in perchrom_mutations.items()} all_positions = list(set(itertools.chain(*vcf_lists.values()))) for position in sorted(all_positions): hits = {caller: position in vcf_lists[caller] for caller in perchrom_mutations.keys()} if sum(hits.values()) >= majority[mut_type]: callers = ','.join([caller for caller, hit in hits.items() if hit]) assert position[1] not in accepted_hits[position[0]] accepted_hits[position[0]][position[1]] = (position[2], position[3], callers) with open(''.join([work_dir, '/', chrom, '.vcf']), 'w') as outfile: print(' print(' file=outfile) print(' for chrom in chrom_sorted(accepted_hits.keys()): for position in sorted(accepted_hits[chrom]): print(chrom, position, '.', accepted_hits[chrom][position][0], accepted_hits[chrom][position][1], '.', 'PASS', 'callers=' + accepted_hits[chrom][position][2], sep='\t', file=outfile) fsid = job.fileStore.writeGlobalFile(outfile.name) export_results(job, fsid, outfile.name, univ_options, subfolder='mutations/merged') return fsid

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'domain'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'code'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'strategies'}, {'id': '9', 'type': 'string', 'children': [], 'value': "'*'"}; {'id': '10', 'type': 'block', 'children': ['11', '30', '49', '68', '87']}, {'id': '11', 'type': 'if_statement', 'children': ['12', '19']}; {'id': '12', 'type': 'boolean_operator', 'children': ['13', '16'], 'value': 'or'}, {'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': '=='}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'strategies'}, {'id': '15', 'type': 'string', 'children': [], 'value': "'*'"}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'in'}, {'id': '17', 'type': 'string', 'children': [], 'value': "'dns_txt'"}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'strategies'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '27']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'check_dns_txt'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25', '26']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'domain'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'code'}, {'id': '27', 'type': 'block', 'children': ['28']}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'True', 'children': []}; {'id': '30', 'type': 'if_statement', 'children': ['31', '38']}, {'id': '31', 'type': 'boolean_operator', 'children': ['32', '35'], 'value': 'or'}; {'id': '32', 'type': 'comparison_operator', 'children': ['33', '34'], 'value': '=='}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'strategies'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'*'"}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': 'in'}; {'id': '36', 'type': 'string', 'children': [], 'value': "'dns_cname'"}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'strategies'}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'if_statement', 'children': ['40', '46']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'check_dns_cname'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44', '45']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '46', 'type': 'block', 'children': ['47']}, {'id': '47', 'type': 'return_statement', 'children': ['48']}; {'id': '48', 'type': 'True', 'children': []}, {'id': '49', 'type': 'if_statement', 'children': ['50', '57']}; {'id': '50', 'type': 'boolean_operator', 'children': ['51', '54'], 'value': 'or'}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': '=='}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'strategies'}, {'id': '53', 'type': 'string', 'children': [], 'value': "'*'"}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': 'in'}, {'id': '55', 'type': 'string', 'children': [], 'value': "'meta_tag'"}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'strategies'}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'if_statement', 'children': ['59', '65']}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'check_meta_tag'}, {'id': '61', 'type': 'argument_list', 'children': ['62', '63', '64']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'domain'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'code'}, {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'return_statement', 'children': ['67']}, {'id': '67', 'type': 'True', 'children': []}; {'id': '68', 'type': 'if_statement', 'children': ['69', '76']}, {'id': '69', 'type': 'boolean_operator', 'children': ['70', '73'], 'value': 'or'}; {'id': '70', 'type': 'comparison_operator', 'children': ['71', '72'], 'value': '=='}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'strategies'}; {'id': '72', 'type': 'string', 'children': [], 'value': "'*'"}, {'id': '73', 'type': 'comparison_operator', 'children': ['74', '75'], 'value': 'in'}; {'id': '74', 'type': 'string', 'children': [], 'value': "'html_file'"}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'strategies'}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'if_statement', 'children': ['78', '84']}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'check_html_file'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82', '83']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '84', 'type': 'block', 'children': ['85']}, {'id': '85', 'type': 'return_statement', 'children': ['86']}; {'id': '86', 'type': 'True', 'children': []}, {'id': '87', 'type': 'return_statement', 'children': ['88']}

def check(domain, prefix, code, strategies='*'): if strategies == '*' or 'dns_txt' in strategies: if check_dns_txt(domain, prefix, code): return True if strategies == '*' or 'dns_cname' in strategies: if check_dns_cname(domain, prefix, code): return True if strategies == '*' or 'meta_tag' in strategies: if check_meta_tag(domain, prefix, code): return True if strategies == '*' or 'html_file' in strategies: if check_html_file(domain, prefix, code): return True return False

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'register_cache_buster'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '28', '32', '36', '45', '159', '168', '181', '194', '221', '251', '259']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '22']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'parenthesized_expression', 'children': ['13'], 'value': '()'}, {'id': '13', 'type': 'boolean_operator', 'children': ['14', '17'], 'value': 'or'}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': 'is'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'raise_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'string', 'children': [], 'value': '"`config` must be an instance of dict or None"'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'bust_map'}, {'id': '31', 'type': 'dictionary', 'children': []}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'unbust_map'}, {'id': '35', 'type': 'dictionary', 'children': []}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'string', 'children': [], 'value': "'Starting computing hashes for static assets'"}, {'id': '45', 'type': 'for_statement', 'children': ['46', '50', '58']}; {'id': '46', 'type': 'pattern_list', 'children': ['47', '48', '49']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'dirpath'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'dirnames'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'filenames'}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'walk'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'static_folder'}; {'id': '58', 'type': 'block', 'children': ['59']}, {'id': '59', 'type': 'for_statement', 'children': ['60', '61', '62']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'filenames'}; {'id': '62', 'type': 'block', 'children': ['63', '75', '85', '94', '129', '143', '147', '153']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'rooted_filename'}; {'id': '66', 'type': 'call', 'children': ['67', '72']}, {'id': '67', 'type': 'attribute', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '72', 'type': 'argument_list', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'dirpath'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '75', 'type': 'if_statement', 'children': ['76', '83']}; {'id': '76', 'type': 'not_operator', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': '__is_file_to_be_busted'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'rooted_filename'}, {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'continue_statement', 'children': []}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '92']}, {'id': '87', 'type': 'attribute', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'string', 'children': [], 'value': "f'Computing hashes for {rooted_filename}'"}; {'id': '94', 'type': 'with_statement', 'children': ['95', '105']}, {'id': '95', 'type': 'with_clause', 'children': ['96']}; {'id': '96', 'type': 'with_item', 'children': ['97']}, {'id': '97', 'type': 'as_pattern', 'children': ['98', '103']}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'rooted_filename'}; {'id': '102', 'type': 'string', 'children': [], 'value': "'rb'"}, {'id': '103', 'type': 'as_pattern_target', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'version'}, {'id': '109', 'type': 'subscript', 'children': ['110', '124']}; {'id': '110', 'type': 'call', 'children': ['111', '123']}, {'id': '111', 'type': 'attribute', 'children': ['112', '122']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'hashlib'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'md5'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}, {'id': '117', 'type': 'call', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '121', 'type': 'argument_list', 'children': []}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'hexdigest'}, {'id': '123', 'type': 'argument_list', 'children': []}; {'id': '124', 'type': 'slice', 'children': ['125', '126']}, {'id': '125', 'type': 'colon', 'children': []}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'hash_size'}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'unbusted'}; {'id': '132', 'type': 'call', 'children': ['133', '138']}, {'id': '133', 'type': 'attribute', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'relpath'}; {'id': '138', 'type': 'argument_list', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'rooted_filename'}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'static_folder'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'busted'}; {'id': '146', 'type': 'string', 'children': [], 'value': 'f"{unbusted}?q={version}"'}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '152']}, {'id': '149', 'type': 'subscript', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'bust_map'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'unbusted'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'busted'}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '158']}, {'id': '155', 'type': 'subscript', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'unbust_map'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'busted'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'unbusted'}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'call', 'children': ['161', '166']}, {'id': '161', 'type': 'attribute', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'string', 'children': [], 'value': "'Finished Starting computing hashes for static assets'"}; {'id': '168', 'type': 'function_definition', 'children': ['169', '170', '172']}, {'id': '169', 'type': 'function_name', 'children': [], 'value': 'bust_filename'}; {'id': '170', 'type': 'parameters', 'children': ['171']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '172', 'type': 'block', 'children': ['173']}, {'id': '173', 'type': 'return_statement', 'children': ['174']}; {'id': '174', 'type': 'call', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'bust_map'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '178', 'type': 'argument_list', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '181', 'type': 'function_definition', 'children': ['182', '183', '185']}; {'id': '182', 'type': 'function_name', 'children': [], 'value': 'unbust_filename'}, {'id': '183', 'type': 'parameters', 'children': ['184']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '185', 'type': 'block', 'children': ['186']}; {'id': '186', 'type': 'return_statement', 'children': ['187']}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'unbust_map'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '191', 'type': 'argument_list', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '194', 'type': 'decorated_definition', 'children': ['195', '199']}, {'id': '195', 'type': 'decorator', 'children': ['196']}; {'id': '196', 'type': 'attribute', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'url_defaults'}, {'id': '199', 'type': 'function_definition', 'children': ['200', '201', '204']}; {'id': '200', 'type': 'function_name', 'children': [], 'value': 'reverse_to_cache_busted_url'}, {'id': '201', 'type': 'parameters', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '204', 'type': 'block', 'children': ['205']}, {'id': '205', 'type': 'if_statement', 'children': ['206', '209']}; {'id': '206', 'type': 'comparison_operator', 'children': ['207', '208'], 'value': '=='}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'endpoint'}; {'id': '208', 'type': 'string', 'children': [], 'value': "'static'"}, {'id': '209', 'type': 'block', 'children': ['210']}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'assignment', 'children': ['212', '215']}; {'id': '212', 'type': 'subscript', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '214', 'type': 'string', 'children': [], 'value': "'filename'"}, {'id': '215', 'type': 'call', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'bust_filename'}, {'id': '217', 'type': 'argument_list', 'children': ['218']}; {'id': '218', 'type': 'subscript', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '220', 'type': 'string', 'children': [], 'value': "'filename'"}, {'id': '221', 'type': 'function_definition', 'children': ['222', '223', '228']}; {'id': '222', 'type': 'function_name', 'children': [], 'value': 'debusting_static_view'}, {'id': '223', 'type': 'parameters', 'children': ['224', '226']}; {'id': '224', 'type': 'list_splat_pattern', 'children': ['225']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '226', 'type': 'dictionary_splat_pattern', 'children': ['227']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '228', 'type': 'block', 'children': ['229', '243']}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'assignment', 'children': ['231', '234']}, {'id': '231', 'type': 'subscript', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '233', 'type': 'string', 'children': [], 'value': "'filename'"}; {'id': '234', 'type': 'call', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'unbust_filename'}; {'id': '236', 'type': 'argument_list', 'children': ['237']}, {'id': '237', 'type': 'call', 'children': ['238', '241']}; {'id': '238', 'type': 'attribute', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '241', 'type': 'argument_list', 'children': ['242']}; {'id': '242', 'type': 'string', 'children': [], 'value': "'filename'"}, {'id': '243', 'type': 'return_statement', 'children': ['244']}; {'id': '244', 'type': 'call', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'original_static_view'}; {'id': '246', 'type': 'argument_list', 'children': ['247', '249']}, {'id': '247', 'type': 'list_splat', 'children': ['248']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '249', 'type': 'dictionary_splat', 'children': ['250']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '251', 'type': 'expression_statement', 'children': ['252']}; {'id': '252', 'type': 'assignment', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'original_static_view'}; {'id': '254', 'type': 'subscript', 'children': ['255', '258']}, {'id': '255', 'type': 'attribute', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'view_functions'}; {'id': '258', 'type': 'string', 'children': [], 'value': "'static'"}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'assignment', 'children': ['261', '266']}, {'id': '261', 'type': 'subscript', 'children': ['262', '265']}; {'id': '262', 'type': 'attribute', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'view_functions'}, {'id': '265', 'type': 'string', 'children': [], 'value': "'static'"}

def register_cache_buster(self, app, config=None): if not (config is None or isinstance(config, dict)): raise ValueError("`config` must be an instance of dict or None") bust_map = {} unbust_map = {} app.logger.debug('Starting computing hashes for static assets') for dirpath, dirnames, filenames in os.walk(app.static_folder): for filename in filenames: rooted_filename = os.path.join(dirpath, filename) if not self.__is_file_to_be_busted(rooted_filename): continue app.logger.debug(f'Computing hashes for {rooted_filename}') with open(rooted_filename, 'rb') as f: version = hashlib.md5( f.read() ).hexdigest()[:self.hash_size] unbusted = os.path.relpath(rooted_filename, app.static_folder) busted = f"{unbusted}?q={version}" bust_map[unbusted] = busted unbust_map[busted] = unbusted app.logger.debug('Finished Starting computing hashes for static assets') def bust_filename(file): return bust_map.get(file, file) def unbust_filename(file): return unbust_map.get(file, file) @app.url_defaults def reverse_to_cache_busted_url(endpoint, values): if endpoint == 'static': values['filename'] = bust_filename(values['filename']) def debusting_static_view(*args, **kwargs): kwargs['filename'] = unbust_filename(kwargs.get('filename')) return original_static_view(*args, **kwargs) original_static_view = app.view_functions['static'] app.view_functions['static'] = debusting_static_view

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_inventory'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}; {'id': '6', 'type': 'None', 'children': []}, {'id': '7', 'type': 'block', 'children': ['8', '27', '34', '38', '42', '100', '113', '132', '145', '164', '177', '191', '204', '218', '231', '249']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'udi'}, {'id': '11', 'type': 'dictionary', 'children': ['12', '15', '18', '21', '24']}; {'id': '12', 'type': 'pair', 'children': ['13', '14']}, {'id': '13', 'type': 'string', 'children': [], 'value': '"name"'}; {'id': '14', 'type': 'string', 'children': [], 'value': '""'}, {'id': '15', 'type': 'pair', 'children': ['16', '17']}; {'id': '16', 'type': 'string', 'children': [], 'value': '"description"'}, {'id': '17', 'type': 'string', 'children': [], 'value': '""'}; {'id': '18', 'type': 'pair', 'children': ['19', '20']}, {'id': '19', 'type': 'string', 'children': [], 'value': '"pid"'}; {'id': '20', 'type': 'string', 'children': [], 'value': '""'}, {'id': '21', 'type': 'pair', 'children': ['22', '23']}; {'id': '22', 'type': 'string', 'children': [], 'value': '"vid"'}, {'id': '23', 'type': 'string', 'children': [], 'value': '""'}; {'id': '24', 'type': 'pair', 'children': ['25', '26']}, {'id': '25', 'type': 'string', 'children': [], 'value': '"sn"'}; {'id': '26', 'type': 'string', 'children': [], 'value': '""'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '31']}; {'id': '28', 'type': 'comparison_operator', 'children': ['29', '30'], 'value': 'is'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}; {'id': '30', 'type': 'None', 'children': []}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'return_statement', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'udi'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'capture_next'}, {'id': '37', 'type': 'False', 'children': []}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'chassis_udi_text'}, {'id': '41', 'type': 'None', 'children': []}; {'id': '42', 'type': 'for_statement', 'children': ['43', '44', '50']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '50', 'type': 'block', 'children': ['51', '59', '88']}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'lc_line'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '58', 'type': 'argument_list', 'children': []}, {'id': '59', 'type': 'if_statement', 'children': ['60', '78']}; {'id': '60', 'type': 'boolean_operator', 'children': ['61', '77'], 'value': 'and'}, {'id': '61', 'type': 'boolean_operator', 'children': ['62', '74'], 'value': 'and'}; {'id': '62', 'type': 'parenthesized_expression', 'children': ['63'], 'value': '()'}, {'id': '63', 'type': 'boolean_operator', 'children': ['64', '71'], 'value': 'or'}; {'id': '64', 'type': 'boolean_operator', 'children': ['65', '68'], 'value': 'or'}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '67'], 'value': 'in'}; {'id': '66', 'type': 'string', 'children': [], 'value': "'chassis'"}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'lc_line'}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '70'], 'value': 'in'}, {'id': '69', 'type': 'string', 'children': [], 'value': "'switch system'"}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'lc_line'}, {'id': '71', 'type': 'comparison_operator', 'children': ['72', '73'], 'value': 'in'}; {'id': '72', 'type': 'string', 'children': [], 'value': "'rack'"}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'lc_line'}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '76'], 'value': 'in'}, {'id': '75', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'lc_line'}, {'id': '77', 'type': 'string', 'children': [], 'value': "'descr'"}; {'id': '78', 'type': 'block', 'children': ['79', '83', '87']}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'capture_next'}; {'id': '82', 'type': 'True', 'children': []}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'chassis_udi_text'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '87', 'type': 'continue_statement', 'children': []}; {'id': '88', 'type': 'if_statement', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'capture_next'}; {'id': '90', 'type': 'block', 'children': ['91', '99']}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}; {'id': '94', 'type': 'binary_operator', 'children': ['95', '98'], 'value': '+'}, {'id': '95', 'type': 'binary_operator', 'children': ['96', '97'], 'value': '+'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'chassis_udi_text'}, {'id': '97', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '99', 'type': 'break_statement', 'children': []}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'search'}, {'id': '107', 'type': 'argument_list', 'children': ['108', '109', '110']}; {'id': '108', 'type': 'string', 'children': [], 'value': 'r"(?i)NAME: (?P<name>.*?),? (?i)DESCR"'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'MULTILINE'}, {'id': '113', 'type': 'if_statement', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '115', 'type': 'block', 'children': ['116']}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '121']}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'udi'}; {'id': '120', 'type': 'string', 'children': [], 'value': "'name'"}, {'id': '121', 'type': 'call', 'children': ['122', '130']}; {'id': '122', 'type': 'attribute', 'children': ['123', '129']}, {'id': '123', 'type': 'call', 'children': ['124', '127']}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'string', 'children': [], 'value': "'name'"}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '130', 'type': 'argument_list', 'children': ['131']}, {'id': '131', 'type': 'string', 'children': [], 'value': '\'" ,\''}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'search'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '141', '142']}; {'id': '140', 'type': 'string', 'children': [], 'value': 'r"(?i)DESCR: (?P<description>.*)"'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'MULTILINE'}, {'id': '145', 'type': 'if_statement', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '147', 'type': 'block', 'children': ['148']}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '153']}; {'id': '150', 'type': 'subscript', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'udi'}; {'id': '152', 'type': 'string', 'children': [], 'value': "'description'"}, {'id': '153', 'type': 'call', 'children': ['154', '162']}; {'id': '154', 'type': 'attribute', 'children': ['155', '161']}, {'id': '155', 'type': 'call', 'children': ['156', '159']}; {'id': '156', 'type': 'attribute', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'string', 'children': [], 'value': "'description'"}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'string', 'children': [], 'value': '\'" \''}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'search'}, {'id': '171', 'type': 'argument_list', 'children': ['172', '173', '174']}; {'id': '172', 'type': 'string', 'children': [], 'value': 'r"(?i)PID: (?P<pid>.*?),? "'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'MULTILINE'}, {'id': '177', 'type': 'if_statement', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '179', 'type': 'block', 'children': ['180']}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'assignment', 'children': ['182', '185']}; {'id': '182', 'type': 'subscript', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'udi'}; {'id': '184', 'type': 'string', 'children': [], 'value': "'pid'"}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'string', 'children': [], 'value': "'pid'"}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '194', 'type': 'call', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'search'}; {'id': '198', 'type': 'argument_list', 'children': ['199', '200', '201']}, {'id': '199', 'type': 'string', 'children': [], 'value': 'r"(?i)VID: (?P<vid>.*?),? "'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'MULTILINE'}; {'id': '204', 'type': 'if_statement', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '206', 'type': 'block', 'children': ['207']}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '212']}, {'id': '209', 'type': 'subscript', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'udi'}, {'id': '211', 'type': 'string', 'children': [], 'value': "'vid'"}; {'id': '212', 'type': 'call', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '216', 'type': 'argument_list', 'children': ['217']}, {'id': '217', 'type': 'string', 'children': [], 'value': "'vid'"}; {'id': '218', 'type': 'expression_statement', 'children': ['219']}, {'id': '219', 'type': 'assignment', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '221', 'type': 'call', 'children': ['222', '225']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'search'}, {'id': '225', 'type': 'argument_list', 'children': ['226', '227', '228']}; {'id': '226', 'type': 'string', 'children': [], 'value': 'r"(?i)SN: (?P<sn>.*)"'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'inventory_output'}; {'id': '228', 'type': 'attribute', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'MULTILINE'}, {'id': '231', 'type': 'if_statement', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '233', 'type': 'block', 'children': ['234']}; {'id': '234', 'type': 'expression_statement', 'children': ['235']}, {'id': '235', 'type': 'assignment', 'children': ['236', '239']}; {'id': '236', 'type': 'subscript', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'udi'}; {'id': '238', 'type': 'string', 'children': [], 'value': "'sn'"}, {'id': '239', 'type': 'call', 'children': ['240', '248']}; {'id': '240', 'type': 'attribute', 'children': ['241', '247']}, {'id': '241', 'type': 'call', 'children': ['242', '245']}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '245', 'type': 'argument_list', 'children': ['246']}; {'id': '246', 'type': 'string', 'children': [], 'value': "'sn'"}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '248', 'type': 'argument_list', 'children': []}, {'id': '249', 'type': 'return_statement', 'children': ['250']}

def parse_inventory(inventory_output=None): udi = { "name": "", "description": "", "pid": "", "vid": "", "sn": "" } if inventory_output is None: return udi capture_next = False chassis_udi_text = None for line in inventory_output.split('\n'): lc_line = line.lower() if ('chassis' in lc_line or 'switch system' in lc_line or 'rack' in lc_line) and 'name' in lc_line and 'descr': capture_next = True chassis_udi_text = line continue if capture_next: inventory_output = chassis_udi_text + "\n" + line break match = re.search(r"(?i)NAME: (?P<name>.*?),? (?i)DESCR", inventory_output, re.MULTILINE) if match: udi['name'] = match.group('name').strip('" ,') match = re.search(r"(?i)DESCR: (?P<description>.*)", inventory_output, re.MULTILINE) if match: udi['description'] = match.group('description').strip('" ') match = re.search(r"(?i)PID: (?P<pid>.*?),? ", inventory_output, re.MULTILINE) if match: udi['pid'] = match.group('pid') match = re.search(r"(?i)VID: (?P<vid>.*?),? ", inventory_output, re.MULTILINE) if match: udi['vid'] = match.group('vid') match = re.search(r"(?i)SN: (?P<sn>.*)", inventory_output, re.MULTILINE) if match: udi['sn'] = match.group('sn').strip() return udi

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{'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'user_config_file_path'}, {'id': '163', 'type': 'call', 'children': ['164', '169']}; {'id': '164', 'type': 'attribute', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '169', 'type': 'argument_list', 'children': ['170', '178', '179']}; {'id': '170', 'type': 'call', 'children': ['171', '176']}, {'id': '171', 'type': 'attribute', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'expanduser'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'string', 'children': [], 'value': "'~'"}; {'id': '178', 'type': 'string', 'children': [], 'value': "'.condoor'"}, {'id': '179', 'type': 'binary_operator', 'children': ['180', '188'], 'value': '+'}; {'id': '180', 'type': 'call', 'children': ['181', '186']}, {'id': '181', 'type': 'attribute', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '186', 'type': 'argument_list', 'children': ['187']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'script_name'}; {'id': '188', 'type': 'string', 'children': [], 'value': "'.yaml'"}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'assignment', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'user_config_file_path'}; {'id': '192', 'type': 'call', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'getenv'}; {'id': '196', 'type': 'argument_list', 'children': ['197', '211']}, {'id': '197', 'type': 'binary_operator', 'children': ['198', '199'], 'value': '+'}; {'id': '198', 'type': 'string', 'children': [], 'value': "'CONDOOR_'"}, {'id': '199', 'type': 'call', 'children': ['200', '210']}; {'id': '200', 'type': 'attribute', 'children': ['201', '209']}, {'id': '201', 'type': 'call', 'children': ['202', '207']}; {'id': '202', 'type': 'attribute', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '207', 'type': 'argument_list', 'children': ['208']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'script_name'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'upper'}; {'id': '210', 'type': 'argument_list', 'children': []}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'user_config_file_path'}; {'id': '212', 'type': 'if_statement', 'children': ['213', '221']}, {'id': '213', 'type': 'call', 'children': ['214', '219']}; {'id': '214', 'type': 'attribute', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '219', 'type': 'argument_list', 'children': ['220']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'user_config_file_path'}, {'id': '221', 'type': 'block', 'children': ['222', '229']}; {'id': '222', 'type': 'expression_statement', 'children': ['223']}, {'id': '223', 'type': 'assignment', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'user_dict'}, {'id': '225', 'type': 'call', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'load_yaml'}, {'id': '227', 'type': 'argument_list', 'children': ['228']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'user_config_file_path'}, {'id': '229', 'type': 'if_statement', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'user_dict'}, {'id': '231', 'type': 'block', 'children': ['232']}; {'id': '232', 'type': 'expression_statement', 'children': ['233']}, {'id': '233', 'type': 'assignment', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'default_dict'}, {'id': '235', 'type': 'call', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'merge'}, {'id': '237', 'type': 'argument_list', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'user_dict'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'default_dict'}; {'id': '240', 'type': 'return_statement', 'children': ['241']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'default_dict'}

def yaml_file_to_dict(script_name, path=None): def load_yaml(file_path): with open(file_path, 'r') as yamlfile: try: dictionary = yaml.load(yamlfile) except yaml.YAMLError: return {} return dictionary def merge(user, default): if isinstance(user, dict) and isinstance(default, dict): for k, v in default.iteritems(): if k not in user: user[k] = v else: user[k] = merge(user[k], v) return user if path is None: path = os.path.abspath('.') config_file_path = os.path.join(path, script_name + '.yaml') if not os.path.exists(config_file_path): raise RuntimeError('Config file does not exist: {}'.format(config_file_path)) default_dict = load_yaml(config_file_path) user_config_file_path = os.path.join(os.path.expanduser('~'), '.condoor', os.path.basename(script_name) + '.yaml') user_config_file_path = os.getenv('CONDOOR_' + os.path.basename(script_name).upper(), user_config_file_path) if os.path.exists(user_config_file_path): user_dict = load_yaml(user_config_file_path) if user_dict: default_dict = merge(user_dict, default_dict) return default_dict

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'make_hop_info_from_url'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'verify_reachability'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '16', '32', '48', '70', '91', '100']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'parsed'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'urlparse'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '19', 'type': 'conditional_expression', 'children': ['20', '21', '26'], 'value': 'if'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'comparison_operator', 'children': ['22', '25'], 'value': 'is'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'parsed'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'unquote'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'parsed'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'password'}, {'id': '35', 'type': 'conditional_expression', 'children': ['36', '37', '42'], 'value': 'if'}; {'id': '36', 'type': 'None', 'children': []}, {'id': '37', 'type': 'comparison_operator', 'children': ['38', '41'], 'value': 'is'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'parsed'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'password'}, {'id': '41', 'type': 'None', 'children': []}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'unquote'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'parsed'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'password'}; {'id': '48', 'type': 'try_statement', 'children': ['49', '63']}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'enable_password'}, {'id': '53', 'type': 'subscript', 'children': ['54', '62']}; {'id': '54', 'type': 'subscript', 'children': ['55', '61']}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'parse_qs'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'parsed'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '61', 'type': 'string', 'children': [], 'value': '"enable_password"'}; {'id': '62', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '63', 'type': 'except_clause', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'KeyError'}, {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'enable_password'}, {'id': '69', 'type': 'None', 'children': []}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'hop_info'}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'HopInfo'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '79', '82', '83', '84', '87', '88']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'parsed'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'parsed'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'hostname'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'password'}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'parsed'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'port'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'enable_password'}; {'id': '88', 'type': 'keyword_argument', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'verify_reachability'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'verify_reachability'}, {'id': '91', 'type': 'if_statement', 'children': ['92', '97']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'hop_info'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'is_valid'}; {'id': '96', 'type': 'argument_list', 'children': []}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'return_statement', 'children': ['99']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'hop_info'}; {'id': '100', 'type': 'raise_statement', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'InvalidHopInfoError'}

def make_hop_info_from_url(url, verify_reachability=None): parsed = urlparse(url) username = None if parsed.username is None else unquote(parsed.username) password = None if parsed.password is None else unquote(parsed.password) try: enable_password = parse_qs(parsed.query)["enable_password"][0] except KeyError: enable_password = None hop_info = HopInfo( parsed.scheme, parsed.hostname, username, password, parsed.port, enable_password, verify_reachability=verify_reachability ) if hop_info.is_valid(): return hop_info raise InvalidHopInfoError

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sendmail'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'sender'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'recipients'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'mail_options'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'rcpt_options'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '27', '36', '45', '52', '79', '88', '92', '120', '136', '144']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '21']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '18', 'type': 'argument_list', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'recipients'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'recipients'}, {'id': '25', 'type': 'list', 'children': ['26'], 'value': '[recipients]'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'recipients'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '31']}; {'id': '28', 'type': 'comparison_operator', 'children': ['29', '30'], 'value': 'is'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'mail_options'}; {'id': '30', 'type': 'None', 'children': []}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'mail_options'}, {'id': '35', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '40']}, {'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': 'is'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'rcpt_options'}, {'id': '39', 'type': 'None', 'children': []}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'rcpt_options'}; {'id': '44', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'await', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'ehlo_or_helo_if_needed'}, {'id': '51', 'type': 'argument_list', 'children': []}; {'id': '52', 'type': 'if_statement', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'supports_esmtp'}; {'id': '56', 'type': 'block', 'children': ['57']}, {'id': '57', 'type': 'if_statement', 'children': ['58', '63']}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '60'], 'value': 'in'}, {'id': '59', 'type': 'string', 'children': [], 'value': '"size"'}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'esmtp_extensions'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'mail_options'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'string', 'children': [], 'value': '"size={}"'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'message'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'await', 'children': ['81']}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'mail'}, {'id': '85', 'type': 'argument_list', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'sender'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'mail_options'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'errors'}, {'id': '91', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '92', 'type': 'for_statement', 'children': ['93', '94', '95']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'recipient'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'recipients'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'try_statement', 'children': ['97', '107']}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'await', 'children': ['100']}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'rcpt'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'recipient'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'rcpt_options'}, {'id': '107', 'type': 'except_clause', 'children': ['108', '112']}; {'id': '108', 'type': 'as_pattern', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'SMTPCommandFailedError'}; {'id': '110', 'type': 'as_pattern_target', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '112', 'type': 'block', 'children': ['113']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'errors'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '120', 'type': 'if_statement', 'children': ['121', '130']}, {'id': '121', 'type': 'comparison_operator', 'children': ['122', '126'], 'value': '=='}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'recipients'}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '130', 'type': 'block', 'children': ['131']}, {'id': '131', 'type': 'raise_statement', 'children': ['132']}; {'id': '132', 'type': 'call', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'SMTPNoRecipientError'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'await', 'children': ['138']}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '142', 'type': 'argument_list', 'children': ['143']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '144', 'type': 'return_statement', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'errors'}

async def sendmail( self, sender, recipients, message, mail_options=None, rcpt_options=None ): if isinstance(recipients, str): recipients = [recipients] if mail_options is None: mail_options = [] if rcpt_options is None: rcpt_options = [] await self.ehlo_or_helo_if_needed() if self.supports_esmtp: if "size" in self.esmtp_extensions: mail_options.append("size={}".format(len(message))) await self.mail(sender, mail_options) errors = [] for recipient in recipients: try: await self.rcpt(recipient, rcpt_options) except SMTPCommandFailedError as e: errors.append(e) if len(recipients) == len(errors): raise SMTPNoRecipientError(errors) await self.data(message) return errors

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def run_fsm(self, name, command, events, transitions, timeout, max_transitions=20): return self._chain.target_device.run_fsm(name, command, events, transitions, timeout, max_transitions)

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{'id': '16', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '19', 'type': 'tuple', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'URLPattern'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'RegexURLPattern'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'try_statement', 'children': ['24', '214']}; {'id': '24', 'type': 'block', 'children': ['25', '32', '40', '44', '48', '52', '79', '90', '109']}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'describe_pattern'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'pattern'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'docstr'}, {'id': '35', 'type': 'attribute', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'pattern'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'callback'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': '__doc__'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '43', 'type': 'None', 'children': []}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'expected_json_response'}, {'id': '47', 'type': 'string', 'children': [], 'value': "''"}; 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{'id': '64', 'type': 'identifier', 'children': [], 'value': 'docstr'}, {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'DOTALL'}; {'id': '70', 'type': 'if_statement', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'u'}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'expected_url'}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'u'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '79', 'type': 'if_statement', 'children': ['80', '88']}; {'id': '80', 'type': 'comparison_operator', 'children': ['81', '82'], 'value': 'not'}, {'id': '81', 'type': 'string', 'children': [], 'value': "'view_class'"}; {'id': '82', 'type': 'call', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'dir'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'callback'}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'continue_statement', 'children': []}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'possible_methods'}, {'id': '93', 'type': 'list_comprehension', 'children': ['94', '95', '105']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '95', 'type': 'for_in_clause', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'dir'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'attribute', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'callback'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'view_class'}, {'id': '105', 'type': 'if_clause', 'children': ['106']}; {'id': '106', 'type': 'comparison_operator', 'children': ['107', '108'], 'value': 'in'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'METHODS'}, {'id': '109', 'type': 'for_statement', 'children': ['110', '111', '112']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'possible_methods'}; 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{'id': '128', 'type': 'identifier', 'children': [], 'value': 'view_method_docstr'}, {'id': '129', 'type': 'block', 'children': ['130', '154', '169']}; {'id': '130', 'type': 'if_statement', 'children': ['131', '137']}, {'id': '131', 'type': 'comparison_operator', 'children': ['132', '133'], 'value': 'in'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '133', 'type': 'list', 'children': ['134', '135', '136'], 'value': "['put', 'patch', 'delete']"}; {'id': '134', 'type': 'string', 'children': [], 'value': "'put'"}, {'id': '135', 'type': 'string', 'children': [], 'value': "'patch'"}; {'id': '136', 'type': 'string', 'children': [], 'value': "'delete'"}, {'id': '137', 'type': 'block', 'children': ['138', '153']}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '145']}; {'id': '140', 'type': 'attribute', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'url_details'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '145', 'type': 'argument_list', 'children': ['146']}; {'id': '146', 'type': 'dictionary', 'children': ['147', '150']}, {'id': '147', 'type': 'pair', 'children': ['148', '149']}; {'id': '148', 'type': 'string', 'children': [], 'value': "'url'"}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'expected_url'}; {'id': '150', 'type': 'pair', 'children': ['151', '152']}, {'id': '151', 'type': 'string', 'children': [], 'value': "'method'"}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '153', 'type': 'continue_statement', 'children': []}; {'id': '154', 'type': 'expression_statement', 'children': ['155']}, {'id': '155', 'type': 'assignment', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; 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{'id': '172', 'type': 'None', 'children': []}, {'id': '173', 'type': 'block', 'children': ['174']}; {'id': '174', 'type': 'for_statement', 'children': ['175', '176', '177']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '177', 'type': 'block', 'children': ['178', '186']}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'assignment', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'expected_json_response'}, {'id': '181', 'type': 'call', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '185', 'type': 'argument_list', 'children': []}; {'id': '186', 'type': 'if_statement', 'children': ['187', '194']}, {'id': '187', 'type': 'boolean_operator', 'children': ['188', '193'], 'value': 'and'}; {'id': '188', 'type': 'boolean_operator', 'children': ['189', '192'], 'value': 'and'}, {'id': '189', 'type': 'comparison_operator', 'children': ['190', '191'], 'value': 'is'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '191', 'type': 'None', 'children': []}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'expected_json_response'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'expected_url'}; {'id': '194', 'type': 'block', 'children': ['195', '213']}, {'id': '195', 'type': 'expression_statement', 'children': ['196']}; {'id': '196', 'type': 'call', 'children': ['197', '202']}, {'id': '197', 'type': 'attribute', 'children': ['198', '201']}; {'id': '198', 'type': 'attribute', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'url_details'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '202', 'type': 'argument_list', 'children': ['203']}, {'id': '203', 'type': 'dictionary', 'children': ['204', '207', '210']}; {'id': '204', 'type': 'pair', 'children': ['205', '206']}, {'id': '205', 'type': 'string', 'children': [], 'value': "'url'"}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'expected_url'}, {'id': '207', 'type': 'pair', 'children': ['208', '209']}; {'id': '208', 'type': 'string', 'children': [], 'value': "'method'"}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '210', 'type': 'pair', 'children': ['211', '212']}, {'id': '211', 'type': 'string', 'children': [], 'value': "'response'"}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'expected_json_response'}, {'id': '213', 'type': 'continue_statement', 'children': []}; {'id': '214', 'type': 'except_clause', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'ViewDoesNotExist'}; {'id': '216', 'type': 'block', 'children': ['217']}, {'id': '217', 'type': 'pass_statement', 'children': []}; {'id': '218', 'type': 'elif_clause', 'children': ['219', '226']}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '221', 'type': 'argument_list', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '223', 'type': 'tuple', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'URLResolver'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'RegexURLResolver'}; {'id': '226', 'type': 'block', 'children': ['227', '239', '246', '252']}, {'id': '227', 'type': 'try_statement', 'children': ['228', '235']}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'assignment', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'patterns'}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'pattern'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'url_patterns'}, {'id': '235', 'type': 'except_clause', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'ImportError'}, {'id': '237', 'type': 'block', 'children': ['238']}; {'id': '238', 'type': 'continue_statement', 'children': []}, {'id': '239', 'type': 'expression_statement', 'children': ['240']}; {'id': '240', 'type': 'assignment', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '242', 'type': 'call', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'describe_pattern'}; {'id': '244', 'type': 'argument_list', 'children': ['245']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'pattern'}; {'id': '246', 'type': 'expression_statement', 'children': ['247']}, {'id': '247', 'type': 'assignment', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'current_full_url'}, {'id': '249', 'type': 'binary_operator', 'children': ['250', '251'], 'value': '+'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '252', 'type': 'expression_statement', 'children': ['253']}, {'id': '253', 'type': 'call', 'children': ['254', '257']}; {'id': '254', 'type': 'attribute', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': '_get_view_details'}, {'id': '257', 'type': 'argument_list', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'current_full_url'}

def _get_view_details(self, urlpatterns, parent=''): for pattern in urlpatterns: if isinstance(pattern, (URLPattern, RegexURLPattern)): try: d = describe_pattern(pattern) docstr = pattern.callback.__doc__ method = None expected_json_response = '' expected_url = '' if docstr: u = re.findall(r'URL: (.*)', docstr, flags=re.DOTALL) if u: expected_url = u[0] if 'view_class' not in dir(pattern.callback): continue possible_methods = [m for m in dir(pattern.callback.view_class) if m in METHODS] for method in possible_methods: view_method_docstr = getattr(pattern.callback.view_class, method).__doc__ if view_method_docstr: if method in ['put', 'patch', 'delete']: self.url_details.append({ 'url': expected_url, 'method': method }) continue j = re.findall(r'```(.*)```', view_method_docstr, flags=re.DOTALL) if j is not None: for match in j: expected_json_response = match.strip() if method is not None and expected_json_response and expected_url: self.url_details.append({ 'url': expected_url, 'method': method, 'response': expected_json_response }) continue except ViewDoesNotExist: pass elif isinstance(pattern, (URLResolver, RegexURLResolver)): try: patterns = pattern.url_patterns except ImportError: continue d = describe_pattern(pattern) current_full_url = parent + d self._get_view_details(patterns, current_full_url)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'scan_module'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'modpath'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '7', 'type': 'block', 'children': ['8', '22', '89', '184', '230', '261', '267', '273', '313']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'used_origins'}, {'id': '11', 'type': 'call', 'children': ['12', '17']}; {'id': '12', 'type': 'attribute', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'setdefault'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'modpath'}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '21', 'type': 'argument_list', 'children': []}; {'id': '22', 'type': 'function_definition', 'children': ['23', '24', '27']}, {'id': '23', 'type': 'function_name', 'children': [], 'value': 'get_origins'}; {'id': '24', 'type': 'parameters', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'modpath'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '27', 'type': 'block', 'children': ['28', '34', '81', '87']}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'origins'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '33', 'type': 'argument_list', 'children': []}; {'id': '34', 'type': 'function_definition', 'children': ['35', '36', '39']}, {'id': '35', 'type': 'function_name', 'children': [], 'value': 'walk_origins'}; {'id': '36', 'type': 'parameters', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'modpath'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'for_statement', 'children': ['41', '42', '51']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '42', 'type': 'call', 'children': ['43', '48']}, {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'import_map'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'get_origins'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'modpath'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'if_statement', 'children': ['53', '56']}, {'id': '53', 'type': 'comparison_operator', 'children': ['54', '55'], 'value': 'not'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'origins'}; {'id': '56', 'type': 'block', 'children': ['57', '64']}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'origins'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '64', 'type': 'if_statement', 'children': ['65', '68']}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '67'], 'value': 'in'}; {'id': '66', 'type': 'string', 'children': [], 'value': "'.'"}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'walk_origins'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'list_splat', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'rsplit'}; {'id': '78', 'type': 'argument_list', 'children': ['79', '80']}, {'id': '79', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '80', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'walk_origins'}; {'id': '84', 'type': 'argument_list', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'modpath'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '87', 'type': 'return_statement', 'children': ['88']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'origins'}, {'id': '89', 'type': 'function_definition', 'children': ['90', '91', '93']}; {'id': '90', 'type': 'function_name', 'children': [], 'value': 'get_origins_for_node'}, {'id': '91', 'type': 'parameters', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '93', 'type': 'block', 'children': ['94', '128', '180']}; {'id': '94', 'type': 'if_statement', 'children': ['95', '110']}, {'id': '95', 'type': 'boolean_operator', 'children': ['96', '102'], 'value': 'and'}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '101'], 'value': '=='}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'node_type'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '101', 'type': 'string', 'children': [], 'value': "'Name'"}; {'id': '102', 'type': 'comparison_operator', 'children': ['103', '109'], 'value': '=='}, {'id': '103', 'type': 'call', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'node_type'}, {'id': '105', 'type': 'argument_list', 'children': ['106']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'Load'"}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'return_statement', 'children': ['112']}; {'id': '112', 'type': 'binary_operator', 'children': ['113', '121'], 'value': '|'}, {'id': '113', 'type': 'set', 'children': ['114']}; {'id': '114', 'type': 'binary_operator', 'children': ['115', '118'], 'value': '+'}, {'id': '115', 'type': 'binary_operator', 'children': ['116', '117'], 'value': '+'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'modpath'}, {'id': '117', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '121', 'type': 'call', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'get_origins'}, {'id': '123', 'type': 'argument_list', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'modpath'}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '128', 'type': 'if_statement', 'children': ['129', '144']}, {'id': '129', 'type': 'boolean_operator', 'children': ['130', '136'], 'value': 'and'}; {'id': '130', 'type': 'comparison_operator', 'children': ['131', '135'], 'value': '=='}, {'id': '131', 'type': 'call', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'node_type'}, {'id': '133', 'type': 'argument_list', 'children': ['134']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '135', 'type': 'string', 'children': [], 'value': "'Attribute'"}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '143'], 'value': '=='}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'node_type'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '143', 'type': 'string', 'children': [], 'value': "'Load'"}; {'id': '144', 'type': 'block', 'children': ['145']}, {'id': '145', 'type': 'return_statement', 'children': ['146']}; {'id': '146', 'type': 'call', 'children': ['147', '150']}, {'id': '147', 'type': 'attribute', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'union'}; {'id': '150', 'type': 'argument_list', 'children': ['151', '154']}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '153', 'type': 'argument_list', 'children': []}; {'id': '154', 'type': 'list_splat', 'children': ['155']}, {'id': '155', 'type': 'list_comprehension', 'children': ['156', '172']}; {'id': '156', 'type': 'binary_operator', 'children': ['157', '165'], 'value': '|'}, {'id': '157', 'type': 'set', 'children': ['158']}; {'id': '158', 'type': 'binary_operator', 'children': ['159', '162'], 'value': '+'}, {'id': '159', 'type': 'binary_operator', 'children': ['160', '161'], 'value': '+'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '161', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'attr'}, {'id': '165', 'type': 'call', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'get_origins'}, {'id': '167', 'type': 'argument_list', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '172', 'type': 'for_in_clause', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '174', 'type': 'call', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'get_origins_for_node'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '180', 'type': 'return_statement', 'children': ['181']}, {'id': '181', 'type': 'call', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '183', 'type': 'argument_list', 'children': []}; {'id': '184', 'type': 'function_definition', 'children': ['185', '186', '188']}, {'id': '185', 'type': 'function_name', 'children': [], 'value': 'get_origins_used_by_node'}; {'id': '186', 'type': 'parameters', 'children': ['187']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '188', 'type': 'block', 'children': ['189', '202', '226']}, {'id': '189', 'type': 'if_statement', 'children': ['190', '196']}; {'id': '190', 'type': 'comparison_operator', 'children': ['191', '195'], 'value': '=='}, {'id': '191', 'type': 'call', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'node_type'}, {'id': '193', 'type': 'argument_list', 'children': ['194']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '195', 'type': 'string', 'children': [], 'value': "'Name'"}; {'id': '196', 'type': 'block', 'children': ['197']}, {'id': '197', 'type': 'return_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'get_origins_for_node'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '202', 'type': 'if_statement', 'children': ['203', '209']}, {'id': '203', 'type': 'comparison_operator', 'children': ['204', '208'], 'value': '=='}; {'id': '204', 'type': 'call', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'node_type'}; {'id': '206', 'type': 'argument_list', 'children': ['207']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '208', 'type': 'string', 'children': [], 'value': "'Attribute'"}, {'id': '209', 'type': 'block', 'children': ['210']}; {'id': '210', 'type': 'return_statement', 'children': ['211']}, {'id': '211', 'type': 'call', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'union'}, {'id': '215', 'type': 'argument_list', 'children': ['216', '222']}; {'id': '216', 'type': 'call', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'get_origins_used_by_node'}; {'id': '218', 'type': 'argument_list', 'children': ['219']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '222', 'type': 'call', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'get_origins_for_node'}; {'id': '224', 'type': 'argument_list', 'children': ['225']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '226', 'type': 'return_statement', 'children': ['227']}, {'id': '227', 'type': 'call', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '229', 'type': 'argument_list', 'children': []}; {'id': '230', 'type': 'function_definition', 'children': ['231', '232', '234']}, {'id': '231', 'type': 'function_name', 'children': [], 'value': 'scan_loads'}; {'id': '232', 'type': 'parameters', 'children': ['233']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '234', 'type': 'block', 'children': ['235', '255']}, {'id': '235', 'type': 'if_statement', 'children': ['236', '244']}; {'id': '236', 'type': 'comparison_operator', 'children': ['237', '241'], 'value': 'in'}, {'id': '237', 'type': 'call', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'node_type'}, {'id': '239', 'type': 'argument_list', 'children': ['240']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '241', 'type': 'list', 'children': ['242', '243'], 'value': "['Name', 'Attribute']"}; {'id': '242', 'type': 'string', 'children': [], 'value': "'Name'"}, {'id': '243', 'type': 'string', 'children': [], 'value': "'Attribute'"}; {'id': '244', 'type': 'block', 'children': ['245']}, {'id': '245', 'type': 'expression_statement', 'children': ['246']}; {'id': '246', 'type': 'call', 'children': ['247', '250']}, {'id': '247', 'type': 'attribute', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'used_origins'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '250', 'type': 'argument_list', 'children': ['251']}, {'id': '251', 'type': 'call', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'get_origins_used_by_node'}, {'id': '253', 'type': 'argument_list', 'children': ['254']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'call', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'for_each_child'}; {'id': '258', 'type': 'argument_list', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'scan_loads'}, {'id': '261', 'type': 'expression_statement', 'children': ['262']}; {'id': '262', 'type': 'call', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'for_each_child'}; {'id': '264', 'type': 'argument_list', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'scan_loads'}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'assignment', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'intermediate_origins'}; {'id': '270', 'type': 'call', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '272', 'type': 'argument_list', 'children': []}, {'id': '273', 'type': 'for_statement', 'children': ['274', '275', '276']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'used_origins'}; {'id': '276', 'type': 'block', 'children': ['277', '286']}, {'id': '277', 'type': 'expression_statement', 'children': ['278']}; {'id': '278', 'type': 'assignment', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '280', 'type': 'call', 'children': ['281', '284']}, {'id': '281', 'type': 'attribute', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '284', 'type': 'argument_list', 'children': ['285']}, {'id': '285', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '286', 'type': 'for_statement', 'children': ['287', '288', '296']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '288', 'type': 'call', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '290', 'type': 'argument_list', 'children': ['291', '292']}, {'id': '291', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '292', 'type': 'call', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '294', 'type': 'argument_list', 'children': ['295']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '296', 'type': 'block', 'children': ['297']}, {'id': '297', 'type': 'expression_statement', 'children': ['298']}; {'id': '298', 'type': 'call', 'children': ['299', '302']}, {'id': '299', 'type': 'attribute', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'intermediate_origins'}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '302', 'type': 'argument_list', 'children': ['303']}, {'id': '303', 'type': 'call', 'children': ['304', '307']}; {'id': '304', 'type': 'attribute', 'children': ['305', '306']}, {'id': '305', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '307', 'type': 'argument_list', 'children': ['308']}; {'id': '308', 'type': 'subscript', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '310', 'type': 'slice', 'children': ['311', '312']}, {'id': '311', 'type': 'colon', 'children': []}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '313', 'type': 'expression_statement', 'children': ['314']}; {'id': '314', 'type': 'call', 'children': ['315', '318']}, {'id': '315', 'type': 'attribute', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'used_origins'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '318', 'type': 'argument_list', 'children': ['319']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'intermediate_origins'}

def scan_module(self, modpath, node): used_origins = self.map.setdefault(modpath, set()) def get_origins(modpath, name): origins = set() def walk_origins(modpath, name): for origin in self.import_map.get_origins(modpath, name): if origin not in origins: origins.add(origin) if '.' in origin: walk_origins(*origin.rsplit('.', 1)) walk_origins(modpath, name) return origins def get_origins_for_node(node): if node_type(node) == 'Name' and node_type(node.ctx) == 'Load': return {modpath + '.' + node.id} | get_origins(modpath, node.id) if node_type(node) == 'Attribute' and node_type(node.ctx) == 'Load': return set.union(set(), *[ {parent + '.' + node.attr} | get_origins(parent, node.attr) for parent in get_origins_for_node(node.value)]) return set() def get_origins_used_by_node(node): if node_type(node) == 'Name': return get_origins_for_node(node) if node_type(node) == 'Attribute': return set.union(get_origins_used_by_node(node.value), get_origins_for_node(node)) return set() def scan_loads(node): if node_type(node) in ['Name', 'Attribute']: used_origins.update(get_origins_used_by_node(node)) for_each_child(node, scan_loads) for_each_child(node, scan_loads) intermediate_origins = set() for origin in used_origins: parts = origin.split('.') for i in range(1, len(parts)): intermediate_origins.add('.'.join(parts[:i])) used_origins.update(intermediate_origins)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'operations'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'op_types'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '22']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '12']}; {'id': '10', 'type': 'not_operator', 'children': ['11']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'op_types'}; {'id': '12', 'type': 'block', 'children': ['13']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'op_types'}; {'id': '16', 'type': 'list', 'children': ['17', '18', '19', '20', '21'], 'value': "['message', 'action', 'sync', 'viewlock', 'savedchapter']"}, {'id': '17', 'type': 'string', 'children': [], 'value': "'message'"}; {'id': '18', 'type': 'string', 'children': [], 'value': "'action'"}, {'id': '19', 'type': 'string', 'children': [], 'value': "'sync'"}; {'id': '20', 'type': 'string', 'children': [], 'value': "'viewlock'"}, {'id': '21', 'type': 'string', 'children': [], 'value': "'savedchapter'"}; {'id': '22', 'type': 'while_statement', 'children': ['23', '34']}, {'id': '23', 'type': 'comparison_operator', 'children': ['24', '31'], 'value': '<'}; {'id': '24', 'type': 'call', 'children': ['25', '30']}, {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_handle'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'tell'}; {'id': '30', 'type': 'argument_list', 'children': []}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': '_eof'}; {'id': '34', 'type': 'block', 'children': ['35', '50', '77', '133', '157', '172', '193', '216', '236']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'current_time'}; {'id': '38', 'type': 'call', 'children': ['39', '44']}, {'id': '39', 'type': 'attribute', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'mgz'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'util'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'convert_to_timestamp'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'binary_operator', 'children': ['46', '49'], 'value': '/'}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': '_time'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '1000'}; {'id': '50', 'type': 'try_statement', 'children': ['51', '67']}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '55', 'type': 'call', 'children': ['56', '63']}; {'id': '56', 'type': 'attribute', 'children': ['57', '62']}, {'id': '57', 'type': 'attribute', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'mgz'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'parse_stream'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': '_handle'}, {'id': '67', 'type': 'except_clause', 'children': ['68', '71']}; {'id': '68', 'type': 'tuple', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'ConstructError'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '71', 'type': 'block', 'children': ['72']}; {'id': '72', 'type': 'raise_statement', 'children': ['73']}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'MgzError'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'string', 'children': [], 'value': "'failed to parse body operation'"}, {'id': '77', 'type': 'if_statement', 'children': ['78', '83']}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '82'], 'value': '=='}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '82', 'type': 'string', 'children': [], 'value': "'action'"}, {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'if_statement', 'children': ['85', '92', '117']}, {'id': '85', 'type': 'comparison_operator', 'children': ['86', '91'], 'value': 'in'}; {'id': '86', 'type': 'attribute', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'ACTIONS_WITH_PLAYER_ID'}; {'id': '92', 'type': 'block', 'children': ['93', '105']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'counter'}; {'id': '96', 'type': 'subscript', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': '_actions_by_player'}; {'id': '100', 'type': 'attribute', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'player_id'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'counter'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'list', 'children': ['112'], 'value': '[operation.action.type]'}; {'id': '112', 'type': 'attribute', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '117', 'type': 'else_clause', 'children': ['118']}; {'id': '118', 'type': 'block', 'children': ['119']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '126']}, {'id': '121', 'type': 'attribute', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': '_actions_without_player'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}, {'id': '127', 'type': 'list', 'children': ['128'], 'value': '[operation.action.type]'}; {'id': '128', 'type': 'attribute', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '133', 'type': 'if_statement', 'children': ['134', '149']}; {'id': '134', 'type': 'boolean_operator', 'children': ['135', '140'], 'value': 'and'}, {'id': '135', 'type': 'comparison_operator', 'children': ['136', '139'], 'value': '=='}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '139', 'type': 'string', 'children': [], 'value': "'action'"}; {'id': '140', 'type': 'call', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '142', 'type': 'argument_list', 'children': ['143', '148']}, {'id': '143', 'type': 'attribute', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '149', 'type': 'block', 'children': ['150']}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '157', 'type': 'if_statement', 'children': ['158', '163']}; {'id': '158', 'type': 'comparison_operator', 'children': ['159', '162'], 'value': '=='}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '162', 'type': 'string', 'children': [], 'value': "'sync'"}, {'id': '163', 'type': 'block', 'children': ['164']}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'augmented_assignment', 'children': ['166', '169'], 'value': '+='}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': '_time'}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'time_increment'}; {'id': '172', 'type': 'if_statement', 'children': ['173', '186']}, {'id': '173', 'type': 'boolean_operator', 'children': ['174', '179'], 'value': 'and'}; {'id': '174', 'type': 'comparison_operator', 'children': ['175', '178'], 'value': '=='}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '178', 'type': 'string', 'children': [], 'value': "'action'"}, {'id': '179', 'type': 'comparison_operator', 'children': ['180', '185'], 'value': '=='}; {'id': '180', 'type': 'attribute', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '185', 'type': 'string', 'children': [], 'value': "'postgame'"}; {'id': '186', 'type': 'block', 'children': ['187']}, {'id': '187', 'type': 'expression_statement', 'children': ['188']}; {'id': '188', 'type': 'assignment', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': '_postgame'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '193', 'type': 'if_statement', 'children': ['194', '199']}; {'id': '194', 'type': 'comparison_operator', 'children': ['195', '198'], 'value': '=='}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '198', 'type': 'string', 'children': [], 'value': "'action'"}, {'id': '199', 'type': 'block', 'children': ['200', '208']}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'assignment', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '203', 'type': 'call', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'Action'}, {'id': '205', 'type': 'argument_list', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'current_time'}; {'id': '208', 'type': 'expression_statement', 'children': ['209']}, {'id': '209', 'type': 'call', 'children': ['210', '213']}; {'id': '210', 'type': 'attribute', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': '_parse_action'}, {'id': '213', 'type': 'argument_list', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'current_time'}; {'id': '216', 'type': 'if_statement', 'children': ['217', '222']}, {'id': '217', 'type': 'comparison_operator', 'children': ['218', '221'], 'value': '=='}; {'id': '218', 'type': 'attribute', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '221', 'type': 'string', 'children': [], 'value': "'savedchapter'"}; {'id': '222', 'type': 'block', 'children': ['223']}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'call', 'children': ['225', '228']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': '_parse_lobby_chat'}; {'id': '228', 'type': 'argument_list', 'children': ['229', '234', '235']}, {'id': '229', 'type': 'attribute', 'children': ['230', '233']}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'lobby'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'messages'}; {'id': '234', 'type': 'string', 'children': [], 'value': "'save'"}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'current_time'}; {'id': '236', 'type': 'if_statement', 'children': ['237', '242', '256', '285']}, {'id': '237', 'type': 'comparison_operator', 'children': ['238', '241'], 'value': '=='}; {'id': '238', 'type': 'attribute', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '241', 'type': 'string', 'children': [], 'value': "'viewlock'"}; {'id': '242', 'type': 'block', 'children': ['243']}, {'id': '243', 'type': 'if_statement', 'children': ['244', '249']}; {'id': '244', 'type': 'comparison_operator', 'children': ['245', '248'], 'value': 'in'}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'op_types'}, {'id': '249', 'type': 'block', 'children': ['250']}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'yield', 'children': ['252']}; {'id': '252', 'type': 'call', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'Viewlock'}; {'id': '254', 'type': 'argument_list', 'children': ['255']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '256', 'type': 'elif_clause', 'children': ['257', '270']}, {'id': '257', 'type': 'boolean_operator', 'children': ['258', '263'], 'value': 'and'}; {'id': '258', 'type': 'comparison_operator', 'children': ['259', '262'], 'value': '=='}, {'id': '259', 'type': 'attribute', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '262', 'type': 'string', 'children': [], 'value': "'action'"}, {'id': '263', 'type': 'comparison_operator', 'children': ['264', '269'], 'value': '!='}; {'id': '264', 'type': 'attribute', 'children': ['265', '268']}, {'id': '265', 'type': 'attribute', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '269', 'type': 'string', 'children': [], 'value': "'postgame'"}; {'id': '270', 'type': 'block', 'children': ['271']}, {'id': '271', 'type': 'if_statement', 'children': ['272', '277']}; {'id': '272', 'type': 'comparison_operator', 'children': ['273', '276'], 'value': 'in'}, {'id': '273', 'type': 'attribute', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'op_types'}, {'id': '277', 'type': 'block', 'children': ['278']}; {'id': '278', 'type': 'expression_statement', 'children': ['279']}, {'id': '279', 'type': 'yield', 'children': ['280']}; {'id': '280', 'type': 'call', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'Action'}; {'id': '282', 'type': 'argument_list', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'current_time'}, {'id': '285', 'type': 'elif_clause', 'children': ['286', '305']}; {'id': '286', 'type': 'parenthesized_expression', 'children': ['287'], 'value': '()'}, {'id': '287', 'type': 'boolean_operator', 'children': ['288', '300'], 'value': 'and'}; {'id': '288', 'type': 'parenthesized_expression', 'children': ['289'], 'value': '()'}, {'id': '289', 'type': 'boolean_operator', 'children': ['290', '295'], 'value': 'or'}; {'id': '290', 'type': 'comparison_operator', 'children': ['291', '294'], 'value': '=='}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '294', 'type': 'string', 'children': [], 'value': "'message'"}, {'id': '295', 'type': 'comparison_operator', 'children': ['296', '299'], 'value': '=='}; {'id': '296', 'type': 'attribute', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '299', 'type': 'string', 'children': [], 'value': "'embedded'"}; {'id': '300', 'type': 'comparison_operator', 'children': ['301', '304'], 'value': '=='}, {'id': '301', 'type': 'attribute', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'subtype'}; {'id': '304', 'type': 'string', 'children': [], 'value': "'chat'"}, {'id': '305', 'type': 'block', 'children': ['306', '329', '336']}; {'id': '306', 'type': 'expression_statement', 'children': ['307']}, {'id': '307', 'type': 'assignment', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'chat'}, {'id': '309', 'type': 'call', 'children': ['310', '311']}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'ChatMessage'}, {'id': '311', 'type': 'argument_list', 'children': ['312', '317', '318', '323', '328']}; {'id': '312', 'type': 'attribute', 'children': ['313', '316']}, {'id': '313', 'type': 'attribute', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'text'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'current_time'}; {'id': '318', 'type': 'call', 'children': ['319', '322']}, {'id': '319', 'type': 'attribute', 'children': ['320', '321']}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '321', 'type': 'identifier', 'children': [], 'value': '_players'}; {'id': '322', 'type': 'argument_list', 'children': []}, {'id': '323', 'type': 'subscript', 'children': ['324', '327']}; {'id': '324', 'type': 'attribute', 'children': ['325', '326']}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '326', 'type': 'identifier', 'children': [], 'value': '_diplomacy'}, {'id': '327', 'type': 'string', 'children': [], 'value': "'type'"}; {'id': '328', 'type': 'string', 'children': [], 'value': "'game'"}, {'id': '329', 'type': 'expression_statement', 'children': ['330']}; {'id': '330', 'type': 'call', 'children': ['331', '334']}, {'id': '331', 'type': 'attribute', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': '_parse_chat'}; {'id': '334', 'type': 'argument_list', 'children': ['335']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'chat'}; {'id': '336', 'type': 'if_statement', 'children': ['337', '342']}, {'id': '337', 'type': 'comparison_operator', 'children': ['338', '341'], 'value': 'in'}; {'id': '338', 'type': 'attribute', 'children': ['339', '340']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'op_types'}; {'id': '342', 'type': 'block', 'children': ['343']}, {'id': '343', 'type': 'expression_statement', 'children': ['344']}; {'id': '344', 'type': 'yield', 'children': ['345']}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'chat'}

def operations(self, op_types=None): if not op_types: op_types = ['message', 'action', 'sync', 'viewlock', 'savedchapter'] while self._handle.tell() < self._eof: current_time = mgz.util.convert_to_timestamp(self._time / 1000) try: operation = mgz.body.operation.parse_stream(self._handle) except (ConstructError, ValueError): raise MgzError('failed to parse body operation') if operation.type == 'action': if operation.action.type in ACTIONS_WITH_PLAYER_ID: counter = self._actions_by_player[operation.action.player_id] counter.update([operation.action.type]) else: self._actions_without_player.update([operation.action.type]) if operation.type == 'action' and isinstance(operation.action.type, int): print(operation.action) if operation.type == 'sync': self._time += operation.time_increment if operation.type == 'action' and operation.action.type == 'postgame': self._postgame = operation if operation.type == 'action': action = Action(operation, current_time) self._parse_action(action, current_time) if operation.type == 'savedchapter': self._parse_lobby_chat(operation.lobby.messages, 'save', current_time) if operation.type == 'viewlock': if operation.type in op_types: yield Viewlock(operation) elif operation.type == 'action' and operation.action.type != 'postgame': if operation.type in op_types: yield Action(operation, current_time) elif ((operation.type == 'message' or operation.type == 'embedded') and operation.subtype == 'chat'): chat = ChatMessage(operation.data.text, current_time, self._players(), self._diplomacy['type'], 'game') self._parse_chat(chat) if operation.type in op_types: yield chat

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '20', '24', '30', '44', '402', '409']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'FSM'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'Context'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'device'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'transition_counter'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'timeout'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'timeout'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'string', 'children': [], 'value': '"{} Start"'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '44', 'type': 'while_statement', 'children': ['45', '50']}, {'id': '45', 'type': 'comparison_operator', 'children': ['46', '47'], 'value': '<'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'transition_counter'}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'max_transitions'}; {'id': '50', 'type': 'block', 'children': ['51', '55', '370']}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'augmented_assignment', 'children': ['53', '54'], 'value': '+='}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'transition_counter'}; {'id': '54', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '55', 'type': 'try_statement', 'children': ['56', '357']}; {'id': '56', 'type': 'block', 'children': ['57', '63', '148', '156', '166', '178']}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'start_time'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '62', 'type': 'argument_list', 'children': []}, {'id': '63', 'type': 'if_statement', 'children': ['64', '69', '93']}; {'id': '64', 'type': 'comparison_operator', 'children': ['65', '68'], 'value': 'is'}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'init_pattern'}; {'id': '68', 'type': 'None', 'children': []}, {'id': '69', 'type': 'block', 'children': ['70']}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '75', 'type': 'call', 'children': ['76', '81']}; {'id': '76', 'type': 'attribute', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'ctrl'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'expect'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '85', '90']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'events'}, {'id': '85', 'type': 'keyword_argument', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'searchwindowsize'}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'searchwindowsize'}; {'id': '90', 'type': 'keyword_argument', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'timeout'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'timeout'}, {'id': '93', 'type': 'else_clause', 'children': ['94']}; {'id': '94', 'type': 'block', 'children': ['95', '112']}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'string', 'children': [], 'value': '"INIT_PATTERN={}"'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '105', 'type': 'argument_list', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'pattern_to_str'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'init_pattern'}; {'id': '112', 'type': 'try_statement', 'children': ['113', '129', '140']}, {'id': '113', 'type': 'block', 'children': ['114']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '119', 'type': 'call', 'children': ['120', '125']}; {'id': '120', 'type': 'attribute', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'events'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'init_pattern'}, {'id': '129', 'type': 'except_clause', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '131', 'type': 'block', 'children': ['132', '139']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'string', 'children': [], 'value': '"INIT_PATTERN unknown."'}, {'id': '139', 'type': 'continue_statement', 'children': []}; {'id': '140', 'type': 'finally_clause', 'children': ['141']}, {'id': '141', 'type': 'block', 'children': ['142']}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'assignment', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'init_pattern'}, {'id': '147', 'type': 'None', 'children': []}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'finish_time'}, {'id': '151', 'type': 'binary_operator', 'children': ['152', '155'], 'value': '-'}; {'id': '152', 'type': 'call', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '154', 'type': 'argument_list', 'children': []}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'start_time'}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '159', 'type': 'tuple', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'assignment', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '171', 'type': 'subscript', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'events'}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '178', 'type': 'if_statement', 'children': ['179', '184', '337']}, {'id': '179', 'type': 'comparison_operator', 'children': ['180', '181'], 'value': 'in'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'transition_table'}; {'id': '184', 'type': 'block', 'children': ['185', '193', '200', '219', '309', '318', '324']}, {'id': '185', 'type': 'expression_statement', 'children': ['186']}; {'id': '186', 'type': 'assignment', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'transition'}; {'id': '188', 'type': 'subscript', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'transition_table'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '193', 'type': 'expression_statement', 'children': ['194']}; {'id': '194', 'type': 'assignment', 'children': ['195', '199']}, {'id': '195', 'type': 'pattern_list', 'children': ['196', '197', '198']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'next_state'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'action_instance'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'next_timeout'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'transition'}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'call', 'children': ['202', '205']}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '205', 'type': 'argument_list', 'children': ['206']}; {'id': '206', 'type': 'call', 'children': ['207', '210']}, {'id': '207', 'type': 'attribute', 'children': ['208', '209']}; {'id': '208', 'type': 'string', 'children': [], 'value': '"E={},S={},T={},RT={:.2f}"'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '210', 'type': 'argument_list', 'children': ['211', '214', '217', '218']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '214', 'type': 'attribute', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'timeout'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'finish_time'}, {'id': '219', 'type': 'if_statement', 'children': ['220', '230', '254', '275', '287']}; {'id': '220', 'type': 'boolean_operator', 'children': ['221', '225'], 'value': 'and'}, {'id': '221', 'type': 'call', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'callable'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'action_instance'}, {'id': '225', 'type': 'not_operator', 'children': ['226']}; {'id': '226', 'type': 'call', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'isclass'}; {'id': '228', 'type': 'argument_list', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'action_instance'}; {'id': '230', 'type': 'block', 'children': ['231']}, {'id': '231', 'type': 'if_statement', 'children': ['232', '237']}; {'id': '232', 'type': 'not_operator', 'children': ['233']}, {'id': '233', 'type': 'call', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'action_instance'}, {'id': '235', 'type': 'argument_list', 'children': ['236']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '237', 'type': 'block', 'children': ['238', '252']}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '243', 'type': 'argument_list', 'children': ['244']}; {'id': '244', 'type': 'call', 'children': ['245', '248']}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'string', 'children': [], 'value': '"Error: {}"'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '248', 'type': 'argument_list', 'children': ['249']}, {'id': '249', 'type': 'attribute', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '252', 'type': 'return_statement', 'children': ['253']}, {'id': '253', 'type': 'False', 'children': []}; {'id': '254', 'type': 'elif_clause', 'children': ['255', '260']}, {'id': '255', 'type': 'call', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '257', 'type': 'argument_list', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'action_instance'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '260', 'type': 'block', 'children': ['261', '273']}, {'id': '261', 'type': 'expression_statement', 'children': ['262']}; {'id': '262', 'type': 'call', 'children': ['263', '266']}, {'id': '263', 'type': 'attribute', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '266', 'type': 'argument_list', 'children': ['267']}, {'id': '267', 'type': 'call', 'children': ['268', '271']}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'string', 'children': [], 'value': '"A=Exception {}"'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '271', 'type': 'argument_list', 'children': ['272']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'action_instance'}, {'id': '273', 'type': 'raise_statement', 'children': ['274']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'action_instance'}, {'id': '275', 'type': 'elif_clause', 'children': ['276', '279']}; {'id': '276', 'type': 'comparison_operator', 'children': ['277', '278'], 'value': 'is'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'action_instance'}; {'id': '278', 'type': 'None', 'children': []}, {'id': '279', 'type': 'block', 'children': ['280']}; {'id': '280', 'type': 'expression_statement', 'children': ['281']}, {'id': '281', 'type': 'call', 'children': ['282', '285']}; {'id': '282', 'type': 'attribute', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '285', 'type': 'argument_list', 'children': ['286']}; {'id': '286', 'type': 'string', 'children': [], 'value': '"A=None"'}, {'id': '287', 'type': 'else_clause', 'children': ['288']}; {'id': '288', 'type': 'block', 'children': ['289', '304']}, {'id': '289', 'type': 'expression_statement', 'children': ['290']}; {'id': '290', 'type': 'call', 'children': ['291', '294']}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '294', 'type': 'argument_list', 'children': ['295']}, {'id': '295', 'type': 'call', 'children': ['296', '299']}; {'id': '296', 'type': 'attribute', 'children': ['297', '298']}, {'id': '297', 'type': 'string', 'children': [], 'value': '"FSM Action is not callable: {}"'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '299', 'type': 'argument_list', 'children': ['300']}; {'id': '300', 'type': 'call', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '302', 'type': 'argument_list', 'children': ['303']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'action_instance'}; {'id': '304', 'type': 'raise_statement', 'children': ['305']}, {'id': '305', 'type': 'call', 'children': ['306', '307']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'RuntimeWarning'}, {'id': '307', 'type': 'argument_list', 'children': ['308']}; {'id': '308', 'type': 'string', 'children': [], 'value': '"FSM Action is not callable"'}, {'id': '309', 'type': 'if_statement', 'children': ['310', '313']}; {'id': '310', 'type': 'comparison_operator', 'children': ['311', '312'], 'value': '!='}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'next_timeout'}; {'id': '312', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '313', 'type': 'block', 'children': ['314']}; {'id': '314', 'type': 'expression_statement', 'children': ['315']}, {'id': '315', 'type': 'assignment', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'timeout'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'next_timeout'}; {'id': '318', 'type': 'expression_statement', 'children': ['319']}, {'id': '319', 'type': 'assignment', 'children': ['320', '323']}; {'id': '320', 'type': 'attribute', 'children': ['321', '322']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'next_state'}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'call', 'children': ['326', '329']}; {'id': '326', 'type': 'attribute', 'children': ['327', '328']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '329', 'type': 'argument_list', 'children': ['330']}; {'id': '330', 'type': 'call', 'children': ['331', '334']}, {'id': '331', 'type': 'attribute', 'children': ['332', '333']}; {'id': '332', 'type': 'string', 'children': [], 'value': '"NS={},NT={}"'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '334', 'type': 'argument_list', 'children': ['335', '336']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'next_state'}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'timeout'}, {'id': '337', 'type': 'else_clause', 'children': ['338']}; {'id': '338', 'type': 'block', 'children': ['339', '356']}, {'id': '339', 'type': 'expression_statement', 'children': ['340']}; {'id': '340', 'type': 'call', 'children': ['341', '344']}, {'id': '341', 'type': 'attribute', 'children': ['342', '343']}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '344', 'type': 'argument_list', 'children': ['345']}, {'id': '345', 'type': 'call', 'children': ['346', '349']}; {'id': '346', 'type': 'attribute', 'children': ['347', '348']}, {'id': '347', 'type': 'string', 'children': [], 'value': '"Unknown transition: EVENT={},STATE={}"'}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '349', 'type': 'argument_list', 'children': ['350', '353']}; {'id': '350', 'type': 'attribute', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '353', 'type': 'attribute', 'children': ['354', '355']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '356', 'type': 'continue_statement', 'children': []}, {'id': '357', 'type': 'except_clause', 'children': ['358', '359']}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'EOF'}, {'id': '359', 'type': 'block', 'children': ['360']}; {'id': '360', 'type': 'raise_statement', 'children': ['361']}, {'id': '361', 'type': 'call', 'children': ['362', '363']}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'ConnectionError'}, {'id': '363', 'type': 'argument_list', 'children': ['364', '365']}; {'id': '364', 'type': 'string', 'children': [], 'value': '"Session closed unexpectedly"'}, {'id': '365', 'type': 'attribute', 'children': ['366', '369']}; {'id': '366', 'type': 'attribute', 'children': ['367', '368']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'ctrl'}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'hostname'}; {'id': '370', 'type': 'if_statement', 'children': ['371', '379']}, {'id': '371', 'type': 'boolean_operator', 'children': ['372', '375'], 'value': 'or'}; {'id': '372', 'type': 'attribute', 'children': ['373', '374']}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'finished'}, {'id': '375', 'type': 'comparison_operator', 'children': ['376', '377'], 'value': '=='}; {'id': '376', 'type': 'identifier', 'children': [], 'value': 'next_state'}, {'id': '377', 'type': 'unary_operator', 'children': ['378'], 'value': '-'}; {'id': '378', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '379', 'type': 'block', 'children': ['380', '400']}; {'id': '380', 'type': 'expression_statement', 'children': ['381']}, {'id': '381', 'type': 'call', 'children': ['382', '385']}; {'id': '382', 'type': 'attribute', 'children': ['383', '384']}, {'id': '383', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '385', 'type': 'argument_list', 'children': ['386']}; {'id': '386', 'type': 'call', 'children': ['387', '390']}, {'id': '387', 'type': 'attribute', 'children': ['388', '389']}; {'id': '388', 'type': 'string', 'children': [], 'value': '"{} Stop at E={},S={}"'}, {'id': '389', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '390', 'type': 'argument_list', 'children': ['391', '394', '397']}, {'id': '391', 'type': 'attribute', 'children': ['392', '393']}; {'id': '392', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '393', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '394', 'type': 'attribute', 'children': ['395', '396']}, {'id': '395', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '396', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '397', 'type': 'attribute', 'children': ['398', '399']}; {'id': '398', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '399', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '400', 'type': 'return_statement', 'children': ['401']}, {'id': '401', 'type': 'True', 'children': []}; {'id': '402', 'type': 'expression_statement', 'children': ['403']}, {'id': '403', 'type': 'call', 'children': ['404', '407']}; {'id': '404', 'type': 'attribute', 'children': ['405', '406']}, {'id': '405', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '406', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '407', 'type': 'argument_list', 'children': ['408']}; {'id': '408', 'type': 'string', 'children': [], 'value': '"FSM looped. Exiting"'}, {'id': '409', 'type': 'return_statement', 'children': ['410']}

def run(self): ctx = FSM.Context(self.name, self.device) transition_counter = 0 timeout = self.timeout self.log("{} Start".format(self.name)) while transition_counter < self.max_transitions: transition_counter += 1 try: start_time = time() if self.init_pattern is None: ctx.event = self.ctrl.expect(self.events, searchwindowsize=self.searchwindowsize, timeout=timeout) else: self.log("INIT_PATTERN={}".format(pattern_to_str(self.init_pattern))) try: ctx.event = self.events.index(self.init_pattern) except ValueError: self.log("INIT_PATTERN unknown.") continue finally: self.init_pattern = None finish_time = time() - start_time key = (ctx.event, ctx.state) ctx.pattern = self.events[ctx.event] if key in self.transition_table: transition = self.transition_table[key] next_state, action_instance, next_timeout = transition self.log("E={},S={},T={},RT={:.2f}".format(ctx.event, ctx.state, timeout, finish_time)) if callable(action_instance) and not isclass(action_instance): if not action_instance(ctx): self.log("Error: {}".format(ctx.msg)) return False elif isinstance(action_instance, Exception): self.log("A=Exception {}".format(action_instance)) raise action_instance elif action_instance is None: self.log("A=None") else: self.log("FSM Action is not callable: {}".format(str(action_instance))) raise RuntimeWarning("FSM Action is not callable") if next_timeout != 0: timeout = next_timeout ctx.state = next_state self.log("NS={},NT={}".format(next_state, timeout)) else: self.log("Unknown transition: EVENT={},STATE={}".format(ctx.event, ctx.state)) continue except EOF: raise ConnectionError("Session closed unexpectedly", self.ctrl.hostname) if ctx.finished or next_state == -1: self.log("{} Stop at E={},S={}".format(self.name, ctx.event, ctx.state)) return True self.log("FSM looped. Exiting") return False

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'build'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '6', 'type': 'integer', 'children': [], 'value': '8000'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'fixtures'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '17', '27', '33', '39', '46', '55', '67', '77', '81', '85', '447', '456', '462', '472']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'extractor'}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'Extractor'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'Parser'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'extractor'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'url_details'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'fixtures'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'parser'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'parse'}; {'id': '32', 'type': 'argument_list', 'children': []}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'url_details'}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': '_store'}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'get_store'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'url_details'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'store'}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'dumps'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': '_store'}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'variables'}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'Variable'}, {'id': '63', 'type': 'argument_list', 'children': ['64', '65', '66']}; {'id': '64', 'type': 'string', 'children': [], 'value': "'let'"}, {'id': '65', 'type': 'string', 'children': [], 'value': "'store'"}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'store'}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'functions'}; {'id': '70', 'type': 'binary_operator', 'children': ['71', '76'], 'value': '+'}, {'id': '71', 'type': 'binary_operator', 'children': ['72', '75'], 'value': '+'}; {'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '+'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'DATA_FINDER'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'GET_HANDLER'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'MODIFY_HANDLER'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'POST_HANDLER'}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'endpoints'}; {'id': '80', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'endpoint_uris'}; {'id': '84', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '85', 'type': 'for_statement', 'children': ['86', '87', '90']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'u'}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'parser'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '90', 'type': 'block', 'children': ['91', '97', '126', '136', '157', '221']}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'endpoint'}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'Endpoint'}; {'id': '96', 'type': 'argument_list', 'children': []}, {'id': '97', 'type': 'if_statement', 'children': ['98', '109', '120']}; {'id': '98', 'type': 'comparison_operator', 'children': ['99', '106'], 'value': 'in'}, {'id': '99', 'type': 'call', 'children': ['100', '105']}; {'id': '100', 'type': 'attribute', 'children': ['101', '104']}, {'id': '101', 'type': 'subscript', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'u'}, {'id': '103', 'type': 'string', 'children': [], 'value': "'method'"}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '105', 'type': 'argument_list', 'children': []}; {'id': '106', 'type': 'list', 'children': ['107', '108'], 'value': "['get', 'post']"}, {'id': '107', 'type': 'string', 'children': [], 'value': "'get'"}; {'id': '108', 'type': 'string', 'children': [], 'value': "'post'"}, {'id': '109', 'type': 'block', 'children': ['110']}; 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{'id': '462', 'type': 'expression_statement', 'children': ['463']}, {'id': '463', 'type': 'call', 'children': ['464', '467']}; {'id': '464', 'type': 'attribute', 'children': ['465', '466']}, {'id': '465', 'type': 'identifier', 'children': [], 'value': 'express'}; {'id': '466', 'type': 'identifier', 'children': [], 'value': 'construct'}, {'id': '467', 'type': 'argument_list', 'children': ['468', '469', '470', '471']}; {'id': '468', 'type': 'identifier', 'children': [], 'value': 'variables'}, {'id': '469', 'type': 'identifier', 'children': [], 'value': 'functions'}; {'id': '470', 'type': 'identifier', 'children': [], 'value': 'endpoints'}, {'id': '471', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '472', 'type': 'return_statement', 'children': ['473']}, {'id': '473', 'type': 'identifier', 'children': [], 'value': 'express'}

def build(port=8000, fixtures=None): extractor = Extractor() parser = Parser(extractor.url_details, fixtures) parser.parse() url_details = parser.results _store = get_store(url_details) store = json.dumps(_store) variables = str(Variable('let', 'store', store)) functions = DATA_FINDER + GET_HANDLER + MODIFY_HANDLER + POST_HANDLER endpoints = [] endpoint_uris = [] for u in parser.results: endpoint = Endpoint() if u['method'].lower() in ['get', 'post']: method = u['method'].lower() else: method = 'modify' response = str(ResponseBody(method)) u['url'], list_url = clean_url(u['full_url'], _store, u['method'].lower()) if list_url is not None and u['method'].lower() == 'get': list_endpoint = Endpoint() list_endpoint.construct('get', list_url, response) if str(list_endpoint) not in endpoints: endpoints.append(str(list_endpoint)) if list_endpoint.uri not in endpoint_uris: endpoint_uris.append(list_endpoint.uri) if method == 'modify': without_prefix = re.sub(r'\/(\w+)\_\_', '', u['url']) for k, v in _store.items(): if without_prefix in k: options = v.get('options', '{}') options = ast.literal_eval(options) modifiers = [] if options is not None: modifiers = options.get('modifiers', []) if modifiers: for mod in modifiers: if u['method'].lower() == mod: mod_endpoint = Endpoint() uri = without_prefix if v.get('position') is not None and v['position'] == 'url': uri = re.sub(r'\/?\_\_key', '/:id', u['full_url']) mod_endpoint.construct(u['method'].lower(), uri, response) if str(mod_endpoint) not in endpoints: endpoints.append(str(mod_endpoint)) if mod_endpoint.uri not in endpoint_uris: endpoint_uris.append(mod_endpoint.uri) else: endpoint.construct(u['method'], u['url'], response) if str(endpoint) not in endpoints: endpoints.append(str(endpoint)) if endpoint.uri not in endpoint_uris: endpoint_uris.append(endpoint.uri) endpoints = ''.join(endpoints) express = ExpressServer() express.construct(variables, functions, endpoints, port) return express

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'gpg_decrypt'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cfg'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'gpg_config'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '217', '304']}, {'id': '9', 'type': 'function_definition', 'children': ['10', '11', '13']}; {'id': '10', 'type': 'function_name', 'children': [], 'value': 'decrypt'}, {'id': '11', 'type': 'parameters', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '13', 'type': 'block', 'children': ['14', '215']}; {'id': '14', 'type': 'if_statement', 'children': ['15', '20', '41', '136']}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '20', 'type': 'block', 'children': ['21', '25', '39']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'res_v'}; {'id': '24', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '25', 'type': 'for_statement', 'children': ['26', '27', '28']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'res_v'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'decrypt'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '39', 'type': 'return_statement', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'res_v'}, {'id': '41', 'type': 'elif_clause', 'children': ['42', '47']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'if_statement', 'children': ['49', '52', '115']}, {'id': '49', 'type': 'comparison_operator', 'children': ['50', '51'], 'value': 'in'}; {'id': '50', 'type': 'string', 'children': [], 'value': "'_gpg'"}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '52', 'type': 'block', 'children': ['53']}, {'id': '53', 'type': 'try_statement', 'children': ['54', '101']}; {'id': '54', 'type': 'block', 'children': ['55', '66']}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'decrypted'}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'gpg'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'decrypt'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'subscript', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '65', 'type': 'string', 'children': [], 'value': "'_gpg'"}; {'id': '66', 'type': 'if_statement', 'children': ['67', '70', '89']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'decrypted'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '88']}; {'id': '78', 'type': 'attribute', 'children': ['79', '87']}, {'id': '79', 'type': 'call', 'children': ['80', '85']}; {'id': '80', 'type': 'attribute', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'decrypted'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'string', 'children': [], 'value': "'utf-8'"}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'encode'}; {'id': '88', 'type': 'argument_list', 'children': []}, {'id': '89', 'type': 'else_clause', 'children': ['90']}; {'id': '90', 'type': 'block', 'children': ['91']}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '96', 'type': 'argument_list', 'children': ['97', '98']}, {'id': '97', 'type': 'string', 'children': [], 'value': '"gpg error unpacking secrets %s"'}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'decrypted'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '101', 'type': 'except_clause', 'children': ['102', '106']}; {'id': '102', 'type': 'as_pattern', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '104', 'type': 'as_pattern_target', 'children': ['105']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '106', 'type': 'block', 'children': ['107']}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'call', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '112', 'type': 'argument_list', 'children': ['113', '114']}, {'id': '113', 'type': 'string', 'children': [], 'value': '"error unpacking secrets %s"'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '115', 'type': 'else_clause', 'children': ['116']}; {'id': '116', 'type': 'block', 'children': ['117']}, {'id': '117', 'type': 'for_statement', 'children': ['118', '121', '126']}; {'id': '118', 'type': 'pattern_list', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '125', 'type': 'argument_list', 'children': []}; {'id': '126', 'type': 'block', 'children': ['127']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '132']}, {'id': '129', 'type': 'subscript', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '132', 'type': 'call', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'decrypt'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '136', 'type': 'else_clause', 'children': ['137']}, {'id': '137', 'type': 'block', 'children': ['138']}; {'id': '138', 'type': 'try_statement', 'children': ['139', '205']}, {'id': '139', 'type': 'block', 'children': ['140']}; {'id': '140', 'type': 'if_statement', 'children': ['141', '144']}, {'id': '141', 'type': 'comparison_operator', 'children': ['142', '143'], 'value': 'in'}; {'id': '142', 'type': 'string', 'children': [], 'value': "'BEGIN PGP'"}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '144', 'type': 'block', 'children': ['145']}, {'id': '145', 'type': 'try_statement', 'children': ['146', '191']}; {'id': '146', 'type': 'block', 'children': ['147', '156']}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'decrypted'}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'gpg'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'decrypt'}; {'id': '154', 'type': 'argument_list', 'children': ['155']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '156', 'type': 'if_statement', 'children': ['157', '160', '179']}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'decrypted'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '160', 'type': 'block', 'children': ['161']}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '164', 'type': 'call', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'call', 'children': ['168', '178']}; {'id': '168', 'type': 'attribute', 'children': ['169', '177']}, {'id': '169', 'type': 'call', 'children': ['170', '175']}; {'id': '170', 'type': 'attribute', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'decrypted'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '175', 'type': 'argument_list', 'children': ['176']}; {'id': '176', 'type': 'string', 'children': [], 'value': "'utf-8'"}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'encode'}; {'id': '178', 'type': 'argument_list', 'children': []}, {'id': '179', 'type': 'else_clause', 'children': ['180']}; {'id': '180', 'type': 'block', 'children': ['181']}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'call', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '186', 'type': 'argument_list', 'children': ['187', '188']}, {'id': '187', 'type': 'string', 'children': [], 'value': '"gpg error unpacking secrets %s"'}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'decrypted'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '191', 'type': 'except_clause', 'children': ['192', '196']}; {'id': '192', 'type': 'as_pattern', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '194', 'type': 'as_pattern_target', 'children': ['195']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '196', 'type': 'block', 'children': ['197']}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '202', 'type': 'argument_list', 'children': ['203', '204']}, {'id': '203', 'type': 'string', 'children': [], 'value': '"error unpacking secrets %s"'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '205', 'type': 'except_clause', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '207', 'type': 'block', 'children': ['208']}; {'id': '208', 'type': 'expression_statement', 'children': ['209']}, {'id': '209', 'type': 'call', 'children': ['210', '213']}; {'id': '210', 'type': 'attribute', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '213', 'type': 'argument_list', 'children': ['214']}; {'id': '214', 'type': 'string', 'children': [], 'value': "'Pass on decryption. Only decrypt strings'"}, {'id': '215', 'type': 'return_statement', 'children': ['216']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '217', 'type': 'if_statement', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'GPG_IMPORTED'}, {'id': '219', 'type': 'block', 'children': ['220', '275', '299']}; {'id': '220', 'type': 'if_statement', 'children': ['221', '223']}, {'id': '221', 'type': 'not_operator', 'children': ['222']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'gpg_config'}, {'id': '223', 'type': 'block', 'children': ['224', '228', '235', '248']}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'assignment', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'gpg_config'}, {'id': '227', 'type': 'dictionary', 'children': []}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'assignment', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'defaults'}, {'id': '231', 'type': 'dictionary', 'children': ['232']}; {'id': '232', 'type': 'pair', 'children': ['233', '234']}, {'id': '233', 'type': 'string', 'children': [], 'value': "'homedir'"}; {'id': '234', 'type': 'string', 'children': [], 'value': "'~/.gnupg/'"}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'assignment', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'env_fields'}; {'id': '238', 'type': 'dictionary', 'children': ['239', '242', '245']}, {'id': '239', 'type': 'pair', 'children': ['240', '241']}; {'id': '240', 'type': 'string', 'children': [], 'value': "'homedir'"}, {'id': '241', 'type': 'string', 'children': [], 'value': "'FIGGYPY_GPG_HOMEDIR'"}; {'id': '242', 'type': 'pair', 'children': ['243', '244']}, {'id': '243', 'type': 'string', 'children': [], 'value': "'binary'"}; {'id': '244', 'type': 'string', 'children': [], 'value': "'FIGGYPY_GPG_BINARY'"}, {'id': '245', 'type': 'pair', 'children': ['246', '247']}; {'id': '246', 'type': 'string', 'children': [], 'value': "'keyring'"}, {'id': '247', 'type': 'string', 'children': [], 'value': "'FIGGYPY_GPG_KEYRING'"}; {'id': '248', 'type': 'for_statement', 'children': ['249', '252', '257']}, {'id': '249', 'type': 'pattern_list', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '252', 'type': 'call', 'children': ['253', '256']}, {'id': '253', 'type': 'attribute', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'env_fields'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '256', 'type': 'argument_list', 'children': []}, {'id': '257', 'type': 'block', 'children': ['258']}; {'id': '258', 'type': 'expression_statement', 'children': ['259']}, {'id': '259', 'type': 'assignment', 'children': ['260', '263']}; {'id': '260', 'type': 'subscript', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'gpg_config'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '263', 'type': 'call', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'env_or_default'}, {'id': '265', 'type': 'argument_list', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '267', 'type': 'conditional_expression', 'children': ['268', '271', '274'], 'value': 'if'}; {'id': '268', 'type': 'subscript', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'defaults'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '271', 'type': 'comparison_operator', 'children': ['272', '273'], 'value': 'in'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'defaults'}; {'id': '274', 'type': 'None', 'children': []}, {'id': '275', 'type': 'try_statement', 'children': ['276', '287']}; {'id': '276', 'type': 'block', 'children': ['277']}, {'id': '277', 'type': 'expression_statement', 'children': ['278']}; {'id': '278', 'type': 'assignment', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'gpg'}; {'id': '280', 'type': 'call', 'children': ['281', '284']}, {'id': '281', 'type': 'attribute', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'gnupg'}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'GPG'}; {'id': '284', 'type': 'argument_list', 'children': ['285']}, {'id': '285', 'type': 'dictionary_splat', 'children': ['286']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'gpg_config'}, {'id': '287', 'type': 'except_clause', 'children': ['288', '291']}; {'id': '288', 'type': 'tuple', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'OSError'}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}, {'id': '291', 'type': 'block', 'children': ['292']}; {'id': '292', 'type': 'expression_statement', 'children': ['293']}, {'id': '293', 'type': 'call', 'children': ['294', '297']}; {'id': '294', 'type': 'attribute', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'exception'}, {'id': '297', 'type': 'argument_list', 'children': ['298']}; {'id': '298', 'type': 'string', 'children': [], 'value': "'Failed to configure gpg. Will be unable to decrypt secrets.'"}, {'id': '299', 'type': 'return_statement', 'children': ['300']}; {'id': '300', 'type': 'call', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'decrypt'}; {'id': '302', 'type': 'argument_list', 'children': ['303']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'cfg'}; {'id': '304', 'type': 'return_statement', 'children': ['305']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'cfg'}

def gpg_decrypt(cfg, gpg_config=None): def decrypt(obj): if isinstance(obj, list): res_v = [] for item in obj: res_v.append(decrypt(item)) return res_v elif isinstance(obj, dict): if '_gpg' in obj: try: decrypted = gpg.decrypt(obj['_gpg']) if decrypted.ok: obj = n(decrypted.data.decode('utf-8').encode()) else: log.error("gpg error unpacking secrets %s", decrypted.stderr) except Exception as err: log.error("error unpacking secrets %s", err) else: for k, v in obj.items(): obj[k] = decrypt(v) else: try: if 'BEGIN PGP' in obj: try: decrypted = gpg.decrypt(obj) if decrypted.ok: obj = n(decrypted.data.decode('utf-8').encode()) else: log.error("gpg error unpacking secrets %s", decrypted.stderr) except Exception as err: log.error("error unpacking secrets %s", err) except TypeError: log.debug('Pass on decryption. Only decrypt strings') return obj if GPG_IMPORTED: if not gpg_config: gpg_config = {} defaults = {'homedir': '~/.gnupg/'} env_fields = {'homedir': 'FIGGYPY_GPG_HOMEDIR', 'binary': 'FIGGYPY_GPG_BINARY', 'keyring': 'FIGGYPY_GPG_KEYRING'} for k, v in env_fields.items(): gpg_config[k] = env_or_default(v, defaults[k] if k in defaults else None) try: gpg = gnupg.GPG(**gpg_config) except (OSError, RuntimeError): log.exception('Failed to configure gpg. Will be unable to decrypt secrets.') return decrypt(cfg) return cfg

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{'id': '64', 'type': 'identifier', 'children': [], 'value': 'player'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'attributes'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'my_diplomacy'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '68', 'type': 'string', 'children': [], 'value': "'ally'"}, {'id': '69', 'type': 'block', 'children': ['70', '74', '78', '82', '132', '144', '158', '172']}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'inner_team'}, {'id': '73', 'type': 'False', 'children': []}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'outer_team'}, {'id': '77', 'type': 'False', 'children': []}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'new_team'}, {'id': '81', 'type': 'True', 'children': []}; {'id': '82', 'type': 'for_statement', 'children': ['83', '86', '90']}, {'id': '83', 'type': 'pattern_list', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'tl'}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'teams'}; {'id': '90', 'type': 'block', 'children': ['91', '104', '118']}, {'id': '91', 'type': 'if_statement', 'children': ['92', '99']}; {'id': '92', 'type': 'boolean_operator', 'children': ['93', '96'], 'value': 'or'}, {'id': '93', 'type': 'comparison_operator', 'children': ['94', '95'], 'value': 'in'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'tl'}; 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{'id': '112', 'type': 'block', 'children': ['113', '117']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'inner_team'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '117', 'type': 'break_statement', 'children': []}; {'id': '118', 'type': 'if_statement', 'children': ['119', '126']}, {'id': '119', 'type': 'boolean_operator', 'children': ['120', '123'], 'value': 'and'}; {'id': '120', 'type': 'comparison_operator', 'children': ['121', '122'], 'value': 'not'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'tl'}, {'id': '123', 'type': 'comparison_operator', 'children': ['124', '125'], 'value': 'in'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'tl'}; {'id': '126', 'type': 'block', 'children': ['127', '131']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; 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{'id': '144', 'type': 'if_statement', 'children': ['145', '148']}, {'id': '145', 'type': 'comparison_operator', 'children': ['146', '147'], 'value': 'is'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'inner_team'}, {'id': '147', 'type': 'False', 'children': []}; {'id': '148', 'type': 'block', 'children': ['149']}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'call', 'children': ['151', '156']}, {'id': '151', 'type': 'attribute', 'children': ['152', '155']}; {'id': '152', 'type': 'subscript', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'teams'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'inner_team'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '158', 'type': 'if_statement', 'children': ['159', '162']}, {'id': '159', 'type': 'comparison_operator', 'children': ['160', '161'], 'value': 'is'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'outer_team'}, {'id': '161', 'type': 'False', 'children': []}; {'id': '162', 'type': 'block', 'children': ['163']}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'call', 'children': ['165', '170']}, {'id': '165', 'type': 'attribute', 'children': ['166', '169']}; {'id': '166', 'type': 'subscript', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'teams'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'outer_team'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'assignment', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'added'}, {'id': '175', 'type': 'True', 'children': []}; {'id': '176', 'type': 'if_statement', 'children': ['177', '183']}, {'id': '177', 'type': 'boolean_operator', 'children': ['178', '180'], 'value': 'and'}; {'id': '178', 'type': 'not_operator', 'children': ['179']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'added'}; {'id': '180', 'type': 'comparison_operator', 'children': ['181', '182'], 'value': '!='}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '182', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '183', 'type': 'block', 'children': ['184']}; {'id': '184', 'type': 'expression_statement', 'children': ['185']}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'teams'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'list', 'children': ['191'], 'value': '[j]'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '192', 'type': 'expression_statement', 'children': ['193']}, {'id': '193', 'type': 'assignment', 'children': ['194', '199']}; {'id': '194', 'type': 'subscript', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': '_cache'}; {'id': '198', 'type': 'string', 'children': [], 'value': "'teams'"}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'teams'}; {'id': '200', 'type': 'return_statement', 'children': ['201']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'teams'}

def get_teams(self): if self._cache['teams']: return self._cache['teams'] teams = [] for j, player in enumerate(self._header.initial.players): added = False for i in range(0, len(self._header.initial.players)): if player.attributes.my_diplomacy[i] == 'ally': inner_team = False outer_team = False new_team = True for t, tl in enumerate(teams): if j in tl or i in tl: new_team = False if j in tl and i not in tl: inner_team = t break if j not in tl and i in tl: outer_team = t break if new_team: teams.append([i, j]) if inner_team is not False: teams[inner_team].append(i) if outer_team is not False: teams[outer_team].append(j) added = True if not added and j != 0: teams.append([j]) self._cache['teams'] = teams return teams

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{'id': '32', 'type': 'identifier', 'children': [], 'value': 'game_type'}, {'id': '33', 'type': 'pair', 'children': ['34', '35']}; {'id': '34', 'type': 'string', 'children': [], 'value': "'difficulty'"}, {'id': '35', 'type': 'tuple', 'children': ['36', '45']}; {'id': '36', 'type': 'attribute', 'children': ['37', '44']}, {'id': '37', 'type': 'attribute', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': '_header'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'scenario'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'game_settings'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'difficulty_id'}, {'id': '45', 'type': 'attribute', 'children': ['46', '53']}; {'id': '46', 'type': 'attribute', 'children': ['47', '52']}, {'id': '47', 'type': 'attribute', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': '_header'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'scenario'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'game_settings'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'difficulty'}; {'id': '54', 'type': 'pair', 'children': ['55', '56']}, {'id': '55', 'type': 'string', 'children': [], 'value': "'population_limit'"}; {'id': '56', 'type': 'binary_operator', 'children': ['57', '64'], 'value': '*'}, {'id': '57', 'type': 'attribute', 'children': ['58', '63']}; {'id': '58', 'type': 'attribute', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': '_header'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'lobby'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'population_limit'}; {'id': '64', 'type': 'integer', 'children': [], 'value': '25'}, {'id': '65', 'type': 'pair', 'children': ['66', '67']}; {'id': '66', 'type': 'string', 'children': [], 'value': "'map_reveal_choice'"}, {'id': '67', 'type': 'tuple', 'children': ['68', '75']}; {'id': '68', 'type': 'attribute', 'children': ['69', '74']}, {'id': '69', 'type': 'attribute', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': '_header'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'lobby'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'reveal_map_id'}, {'id': '75', 'type': 'attribute', 'children': ['76', '81']}; {'id': '76', 'type': 'attribute', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': '_header'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'lobby'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'reveal_map'}; {'id': '82', 'type': 'pair', 'children': ['83', '84']}, {'id': '83', 'type': 'string', 'children': [], 'value': "'speed'"}; {'id': '84', 'type': 'tuple', 'children': ['85', '92']}, {'id': '85', 'type': 'attribute', 'children': ['86', '91']}; {'id': '86', 'type': 'attribute', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': '_header'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'replay'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'game_speed_id'}; {'id': '92', 'type': 'call', 'children': ['93', '100']}, {'id': '93', 'type': 'attribute', 'children': ['94', '99']}; {'id': '94', 'type': 'attribute', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'mgz'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'const'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'SPEEDS'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'attribute', 'children': ['102', '107']}; {'id': '102', 'type': 'attribute', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': '_header'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'replay'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'game_speed_id'}; {'id': '108', 'type': 'pair', 'children': ['109', '110']}, {'id': '109', 'type': 'string', 'children': [], 'value': "'cheats'"}; {'id': '110', 'type': 'attribute', 'children': ['111', '116']}, {'id': '111', 'type': 'attribute', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': '_header'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'replay'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'cheats_enabled'}, {'id': '117', 'type': 'pair', 'children': ['118', '119']}; {'id': '118', 'type': 'string', 'children': [], 'value': "'lock_teams'"}, {'id': '119', 'type': 'attribute', 'children': ['120', '125']}; {'id': '120', 'type': 'attribute', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': '_header'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'lobby'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'lock_teams'}; {'id': '126', 'type': 'pair', 'children': ['127', '128']}, {'id': '127', 'type': 'string', 'children': [], 'value': "'starting_resources'"}; {'id': '128', 'type': 'tuple', 'children': ['129', '135']}, {'id': '129', 'type': 'conditional_expression', 'children': ['130', '133', '134'], 'value': 'if'}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'postgame'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'resource_level_id'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'postgame'}; {'id': '134', 'type': 'None', 'children': []}, {'id': '135', 'type': 'conditional_expression', 'children': ['136', '139', '140'], 'value': 'if'}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'postgame'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'resource_level'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'postgame'}; {'id': '140', 'type': 'None', 'children': []}, {'id': '141', 'type': 'pair', 'children': ['142', '143']}; {'id': '142', 'type': 'string', 'children': [], 'value': "'starting_age'"}, {'id': '143', 'type': 'tuple', 'children': ['144', '150']}; {'id': '144', 'type': 'conditional_expression', 'children': ['145', '148', '149'], 'value': 'if'}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'starting_age_id'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '149', 'type': 'None', 'children': []}; {'id': '150', 'type': 'conditional_expression', 'children': ['151', '154', '155'], 'value': 'if'}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'starting_age'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '155', 'type': 'None', 'children': []}; {'id': '156', 'type': 'pair', 'children': ['157', '158']}, {'id': '157', 'type': 'string', 'children': [], 'value': "'victory_condition'"}; {'id': '158', 'type': 'tuple', 'children': ['159', '165']}, {'id': '159', 'type': 'conditional_expression', 'children': ['160', '163', '164'], 'value': 'if'}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'postgame'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'victory_type_id'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'postgame'}; {'id': '164', 'type': 'None', 'children': []}, {'id': '165', 'type': 'conditional_expression', 'children': ['166', '169', '170'], 'value': 'if'}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'postgame'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'victory_type'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'postgame'}; {'id': '170', 'type': 'None', 'children': []}, {'id': '171', 'type': 'pair', 'children': ['172', '173']}; {'id': '172', 'type': 'string', 'children': [], 'value': "'team_together'"}, {'id': '173', 'type': 'conditional_expression', 'children': ['174', '178', '179'], 'value': 'if'}; {'id': '174', 'type': 'not_operator', 'children': ['175']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'team_together'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '179', 'type': 'None', 'children': []}; {'id': '180', 'type': 'pair', 'children': ['181', '182']}, {'id': '181', 'type': 'string', 'children': [], 'value': "'all_technologies'"}; {'id': '182', 'type': 'conditional_expression', 'children': ['183', '186', '187'], 'value': 'if'}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'all_techs'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '187', 'type': 'None', 'children': []}; {'id': '188', 'type': 'pair', 'children': ['189', '190']}, {'id': '189', 'type': 'string', 'children': [], 'value': "'lock_speed'"}; {'id': '190', 'type': 'conditional_expression', 'children': ['191', '194', '195'], 'value': 'if'}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'lock_speed'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'postgame'}, {'id': '195', 'type': 'None', 'children': []}; {'id': '196', 'type': 'pair', 'children': ['197', '198']}, {'id': '197', 'type': 'string', 'children': [], 'value': "'multiqueue'"}

def get_settings(self): postgame = self.get_postgame() return { 'type': ( self._header.lobby.game_type_id, self._header.lobby.game_type ), 'difficulty': ( self._header.scenario.game_settings.difficulty_id, self._header.scenario.game_settings.difficulty ), 'population_limit': self._header.lobby.population_limit * 25, 'map_reveal_choice': ( self._header.lobby.reveal_map_id, self._header.lobby.reveal_map ), 'speed': ( self._header.replay.game_speed_id, mgz.const.SPEEDS.get(self._header.replay.game_speed_id) ), 'cheats': self._header.replay.cheats_enabled, 'lock_teams': self._header.lobby.lock_teams, 'starting_resources': ( postgame.resource_level_id if postgame else None, postgame.resource_level if postgame else None, ), 'starting_age': ( postgame.starting_age_id if postgame else None, postgame.starting_age if postgame else None ), 'victory_condition': ( postgame.victory_type_id if postgame else None, postgame.victory_type if postgame else None ), 'team_together': not postgame.team_together if postgame else None, 'all_technologies': postgame.all_techs if postgame else None, 'lock_speed': postgame.lock_speed if postgame else None, 'multiqueue': None }

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{'id': '46', 'type': 'call', 'children': ['47', '54']}, {'id': '47', 'type': 'attribute', 'children': ['48', '53']}; {'id': '48', 'type': 'attribute', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'mgz'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'const'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'MAP_SIZES'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'attribute', 'children': ['56', '61']}; {'id': '56', 'type': 'attribute', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': '_header'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'map_info'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'size_x'}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'dimension'}, {'id': '65', 'type': 'attribute', 'children': ['66', '71']}; {'id': '66', 'type': 'attribute', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': '_header'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'map_info'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'size_x'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'custom'}, {'id': '75', 'type': 'True', 'children': []}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '79', 'type': 'string', 'children': [], 'value': "'Unknown'"}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '83', 'type': 'None', 'children': []}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'encoding'}, {'id': '87', 'type': 'string', 'children': [], 'value': "'unknown'"}; {'id': '88', 'type': 'for_statement', 'children': ['89', '90', '91']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'pair'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'ENCODING_MARKERS'}, {'id': '91', 'type': 'block', 'children': ['92', '98', '104', '113']}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'assignment', 'children': ['94', '95']}; 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{'id': '110', 'type': 'identifier', 'children': [], 'value': 'encode'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'test_encoding'}, {'id': '113', 'type': 'for_statement', 'children': ['114', '115', '121']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'instructions'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'string', 'children': [], 'value': "b'\\n'"}, {'id': '121', 'type': 'block', 'children': ['122', '131']}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'pos'}, {'id': '125', 'type': 'call', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'find'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'e_m'}, {'id': '131', 'type': 'if_statement', 'children': ['132', '136']}; {'id': '132', 'type': 'comparison_operator', 'children': ['133', '134'], 'value': '>'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '134', 'type': 'unary_operator', 'children': ['135'], 'value': '-'}, {'id': '135', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '136', 'type': 'block', 'children': ['137', '141', '159', '165']}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'assignment', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'encoding'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'test_encoding'}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'assignment', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '144', 'type': 'call', 'children': ['145', '157']}, {'id': '145', 'type': 'attribute', 'children': ['146', '156']}; {'id': '146', 'type': 'subscript', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '148', 'type': 'slice', 'children': ['149', '155']}, {'id': '149', 'type': 'binary_operator', 'children': ['150', '151'], 'value': '+'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'pos'}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'e_m'}, {'id': '155', 'type': 'colon', 'children': []}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'encoding'}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'assignment', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '162', 'type': 'subscript', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'pair'}; {'id': '164', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '165', 'type': 'break_statement', 'children': []}; {'id': '166', 'type': 'if_statement', 'children': ['167', '169']}, {'id': '167', 'type': 'not_operator', 'children': ['168']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '169', 'type': 'block', 'children': ['170', '174']}; {'id': '170', 'type': 'expression_statement', 'children': ['171']}, {'id': '171', 'type': 'assignment', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '173', 'type': 'string', 'children': [], 'value': "'unknown'"}; {'id': '174', 'type': 'for_statement', 'children': ['175', '176', '177']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'pair'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'LANGUAGE_MARKERS'}, {'id': '177', 'type': 'block', 'children': ['178']}; {'id': '178', 'type': 'if_statement', 'children': ['179', '197']}, {'id': '179', 'type': 'comparison_operator', 'children': ['180', '195'], 'value': '>'}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'instructions'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'call', 'children': ['186', '191']}; {'id': '186', 'type': 'attribute', 'children': ['187', '190']}, {'id': '187', 'type': 'subscript', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'pair'}, {'id': '189', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'encode'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'subscript', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'pair'}; {'id': '194', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '195', 'type': 'unary_operator', 'children': ['196'], 'value': '-'}; {'id': '196', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '197', 'type': 'block', 'children': ['198', '204']}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'assignment', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '201', 'type': 'subscript', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'pair'}, {'id': '203', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '204', 'type': 'break_statement', 'children': []}, {'id': '205', 'type': 'expression_statement', 'children': ['206']}; {'id': '206', 'type': 'assignment', 'children': ['207', '212']}, {'id': '207', 'type': 'subscript', 'children': ['208', '211']}; {'id': '208', 'type': 'attribute', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': '_cache'}, {'id': '211', 'type': 'string', 'children': [], 'value': "'encoding'"}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'encoding'}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'assignment', 'children': ['215', '220']}, {'id': '215', 'type': 'subscript', 'children': ['216', '219']}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': '_cache'}, {'id': '219', 'type': 'string', 'children': [], 'value': "'language'"}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '221', 'type': 'if_statement', 'children': ['222', '225']}; {'id': '222', 'type': 'comparison_operator', 'children': ['223', '224'], 'value': '!='}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'map_id'}; {'id': '224', 'type': 'integer', 'children': [], 'value': '44'}, {'id': '225', 'type': 'block', 'children': ['226', '240', '250']}; {'id': '226', 'type': 'if_statement', 'children': ['227', '234']}, {'id': '227', 'type': 'comparison_operator', 'children': ['228', '229'], 'value': 'not'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'map_id'}, {'id': '229', 'type': 'attribute', 'children': ['230', '233']}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'mgz'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'const'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'MAP_NAMES'}; {'id': '234', 'type': 'block', 'children': ['235']}, {'id': '235', 'type': 'raise_statement', 'children': ['236']}; {'id': '236', 'type': 'call', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '238', 'type': 'argument_list', 'children': ['239']}, {'id': '239', 'type': 'string', 'children': [], 'value': "'unspecified builtin map'"}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'assignment', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '243', 'type': 'subscript', 'children': ['244', '249']}; {'id': '244', 'type': 'attribute', 'children': ['245', '248']}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'mgz'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'const'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'MAP_NAMES'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'map_id'}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'assignment', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'custom'}, {'id': '253', 'type': 'False', 'children': []}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'assignment', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '257', 'type': 'call', 'children': ['258', '261']}; {'id': '258', 'type': 'attribute', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'search'}, {'id': '261', 'type': 'argument_list', 'children': ['262', '263']}; {'id': '262', 'type': 'string', 'children': [], 'value': "b'\\x00.*? (\\-?[0-9]+)\\x00.*?\\.rms'"}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'instructions'}; {'id': '264', 'type': 'expression_statement', 'children': ['265']}, {'id': '265', 'type': 'assignment', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'seed'}, {'id': '267', 'type': 'None', 'children': []}; {'id': '268', 'type': 'if_statement', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '270', 'type': 'block', 'children': ['271']}, {'id': '271', 'type': 'expression_statement', 'children': ['272']}; {'id': '272', 'type': 'assignment', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'seed'}; {'id': '274', 'type': 'call', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '276', 'type': 'argument_list', 'children': ['277']}, {'id': '277', 'type': 'call', 'children': ['278', '281']}; {'id': '278', 'type': 'attribute', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '281', 'type': 'argument_list', 'children': ['282']}; {'id': '282', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'assignment', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'has_modes'}; {'id': '286', 'type': 'call', 'children': ['287', '290']}, {'id': '287', 'type': 'attribute', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'string', 'children': [], 'value': "': !'"}; {'id': '292', 'type': 'expression_statement', 'children': ['293']}, {'id': '293', 'type': 'assignment', 'children': ['294', '295']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'mode_string'}, {'id': '295', 'type': 'string', 'children': [], 'value': "''"}; {'id': '296', 'type': 'if_statement', 'children': ['297', '301']}, {'id': '297', 'type': 'comparison_operator', 'children': ['298', '299'], 'value': '>'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'has_modes'}, {'id': '299', 'type': 'unary_operator', 'children': ['300'], 'value': '-'}; {'id': '300', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '301', 'type': 'block', 'children': ['302', '312']}; {'id': '302', 'type': 'expression_statement', 'children': ['303']}, {'id': '303', 'type': 'assignment', 'children': ['304', '305']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'mode_string'}, {'id': '305', 'type': 'subscript', 'children': ['306', '307']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '307', 'type': 'slice', 'children': ['308', '311']}; {'id': '308', 'type': 'binary_operator', 'children': ['309', '310'], 'value': '+'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'has_modes'}; {'id': '310', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '311', 'type': 'colon', 'children': []}; {'id': '312', 'type': 'expression_statement', 'children': ['313']}, {'id': '313', 'type': 'assignment', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '315', 'type': 'subscript', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '317', 'type': 'slice', 'children': ['318', '319']}; {'id': '318', 'type': 'colon', 'children': []}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'has_modes'}; {'id': '320', 'type': 'expression_statement', 'children': ['321']}, {'id': '321', 'type': 'assignment', 'children': ['322', '323']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'modes'}, {'id': '323', 'type': 'dictionary', 'children': ['324', '329', '334', '339']}; {'id': '324', 'type': 'pair', 'children': ['325', '326']}, {'id': '325', 'type': 'string', 'children': [], 'value': "'direct_placement'"}; {'id': '326', 'type': 'comparison_operator', 'children': ['327', '328'], 'value': 'in'}, {'id': '327', 'type': 'string', 'children': [], 'value': "'P'"}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'mode_string'}, {'id': '329', 'type': 'pair', 'children': ['330', '331']}; {'id': '330', 'type': 'string', 'children': [], 'value': "'effect_quantity'"}, {'id': '331', 'type': 'comparison_operator', 'children': ['332', '333'], 'value': 'in'}; {'id': '332', 'type': 'string', 'children': [], 'value': "'C'"}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'mode_string'}; {'id': '334', 'type': 'pair', 'children': ['335', '336']}, {'id': '335', 'type': 'string', 'children': [], 'value': "'guard_state'"}; {'id': '336', 'type': 'comparison_operator', 'children': ['337', '338'], 'value': 'in'}, {'id': '337', 'type': 'string', 'children': [], 'value': "'G'"}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'mode_string'}, {'id': '339', 'type': 'pair', 'children': ['340', '341']}; {'id': '340', 'type': 'string', 'children': [], 'value': "'fixed_positions'"}, {'id': '341', 'type': 'comparison_operator', 'children': ['342', '343'], 'value': 'in'}; {'id': '342', 'type': 'string', 'children': [], 'value': "'F'"}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'mode_string'}; {'id': '344', 'type': 'expression_statement', 'children': ['345']}, {'id': '345', 'type': 'assignment', 'children': ['346', '351']}; {'id': '346', 'type': 'subscript', 'children': ['347', '350']}, {'id': '347', 'type': 'attribute', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '349', 'type': 'identifier', 'children': [], 'value': '_cache'}; {'id': '350', 'type': 'string', 'children': [], 'value': "'map'"}, {'id': '351', 'type': 'dictionary', 'children': ['352', '359', '366', '369', '372', '375', '378', '381']}; {'id': '352', 'type': 'pair', 'children': ['353', '354']}, {'id': '353', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '354', 'type': 'conditional_expression', 'children': ['355', '356', '358'], 'value': 'if'}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'map_id'}; {'id': '356', 'type': 'not_operator', 'children': ['357']}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'custom'}; {'id': '358', 'type': 'None', 'children': []}, {'id': '359', 'type': 'pair', 'children': ['360', '361']}; {'id': '360', 'type': 'string', 'children': [], 'value': "'name'"}, {'id': '361', 'type': 'call', 'children': ['362', '365']}; {'id': '362', 'type': 'attribute', 'children': ['363', '364']}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '364', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '365', 'type': 'argument_list', 'children': []}; {'id': '366', 'type': 'pair', 'children': ['367', '368']}, {'id': '367', 'type': 'string', 'children': [], 'value': "'size'"}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'size'}, {'id': '369', 'type': 'pair', 'children': ['370', '371']}; {'id': '370', 'type': 'string', 'children': [], 'value': "'dimension'"}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'dimension'}; {'id': '372', 'type': 'pair', 'children': ['373', '374']}, {'id': '373', 'type': 'string', 'children': [], 'value': "'seed'"}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'seed'}, {'id': '375', 'type': 'pair', 'children': ['376', '377']}; {'id': '376', 'type': 'string', 'children': [], 'value': "'modes'"}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'modes'}; {'id': '378', 'type': 'pair', 'children': ['379', '380']}, {'id': '379', 'type': 'string', 'children': [], 'value': "'custom'"}; {'id': '380', 'type': 'identifier', 'children': [], 'value': 'custom'}, {'id': '381', 'type': 'pair', 'children': ['382', '383']}; {'id': '382', 'type': 'string', 'children': [], 'value': "'zr'"}, {'id': '383', 'type': 'call', 'children': ['384', '387']}; {'id': '384', 'type': 'attribute', 'children': ['385', '386']}, {'id': '385', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '386', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '387', 'type': 'argument_list', 'children': ['388']}; {'id': '388', 'type': 'string', 'children': [], 'value': "'ZR@'"}, {'id': '389', 'type': 'return_statement', 'children': ['390']}; {'id': '390', 'type': 'subscript', 'children': ['391', '394']}, {'id': '391', 'type': 'attribute', 'children': ['392', '393']}; {'id': '392', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '393', 'type': 'identifier', 'children': [], 'value': '_cache'}

def get_map(self): if self._cache['map']: return self._cache['map'] map_id = self._header.scenario.game_settings.map_id instructions = self._header.scenario.messages.instructions size = mgz.const.MAP_SIZES.get(self._header.map_info.size_x) dimension = self._header.map_info.size_x custom = True name = 'Unknown' language = None encoding = 'unknown' for pair in ENCODING_MARKERS: marker = pair[0] test_encoding = pair[1] e_m = marker.encode(test_encoding) for line in instructions.split(b'\n'): pos = line.find(e_m) if pos > -1: encoding = test_encoding name = line[pos+len(e_m):].decode(encoding) language = pair[2] break if not language: language = 'unknown' for pair in LANGUAGE_MARKERS: if instructions.find(pair[0].encode(pair[1])) > -1: language = pair[2] break self._cache['encoding'] = encoding self._cache['language'] = language if map_id != 44: if map_id not in mgz.const.MAP_NAMES: raise ValueError('unspecified builtin map') name = mgz.const.MAP_NAMES[map_id] custom = False match = re.search(b'\x00.*? (\-?[0-9]+)\x00.*?\.rms', instructions) seed = None if match: seed = int(match.group(1)) has_modes = name.find(': !') mode_string = '' if has_modes > -1: mode_string = name[has_modes + 3:] name = name[:has_modes] modes = { 'direct_placement': 'P' in mode_string, 'effect_quantity': 'C' in mode_string, 'guard_state': 'G' in mode_string, 'fixed_positions': 'F' in mode_string } self._cache['map'] = { 'id': map_id if not custom else None, 'name': name.strip(), 'size': size, 'dimension': dimension, 'seed': seed, 'modes': modes, 'custom': custom, 'zr': name.startswith('ZR@') } return self._cache['map']

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'update'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sources'}, {'id': '7', 'type': 'typed_default_parameter', 'children': ['8', '9', '11']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'follow_symlinks'}, {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'bool'}, {'id': '11', 'type': 'False', 'children': []}; {'id': '12', 'type': 'typed_default_parameter', 'children': ['13', '14', '16']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'maximum_depth'}; {'id': '14', 'type': 'type', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '20'}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'for_statement', 'children': ['19', '20', '21']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'sources'}, {'id': '21', 'type': 'block', 'children': ['22', '60', '67']}; {'id': '22', 'type': 'if_statement', 'children': ['23', '30']}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'klass'}; {'id': '30', 'type': 'block', 'children': ['31', '45', '59']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '44']}, {'id': '33', 'type': 'subscript', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'path_map'}, {'id': '37', 'type': 'attribute', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'this'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '58']}, {'id': '47', 'type': 'subscript', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'class_cache'}, {'id': '51', 'type': 'attribute', 'children': ['52', '57']}; {'id': '52', 'type': 'attribute', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'this'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '59', 'type': 'continue_statement', 'children': []}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '67', 'type': 'if_statement', 'children': ['68', '80', '109']}; {'id': '68', 'type': 'call', 'children': ['69', '76']}, {'id': '69', 'type': 'attribute', 'children': ['70', '75']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '74', 'type': 'argument_list', 'children': []}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'endswith'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'tuple', 'children': ['78', '79']}; {'id': '78', 'type': 'string', 'children': [], 'value': "'.zip'"}, {'id': '79', 'type': 'string', 'children': [], 'value': "'.jar'"}; {'id': '80', 'type': 'block', 'children': ['81', '89']}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'zf'}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'ZipFile'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '88', 'type': 'string', 'children': [], 'value': "'r'"}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '96']}, {'id': '91', 'type': 'attribute', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'path_map'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '99', 'type': 'argument_list', 'children': ['100', '105']}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'zf'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'namelist'}; {'id': '104', 'type': 'argument_list', 'children': []}, {'id': '105', 'type': 'call', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'repeat'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'zf'}, {'id': '109', 'type': 'elif_clause', 'children': ['110', '118']}; {'id': '110', 'type': 'call', 'children': ['111', '116']}, {'id': '111', 'type': 'attribute', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'isdir'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '118', 'type': 'block', 'children': ['119', '132']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'walker'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': '_walk'}; {'id': '124', 'type': 'argument_list', 'children': ['125', '126', '129']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '126', 'type': 'keyword_argument', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'follow_links'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'follow_symlinks'}, {'id': '129', 'type': 'keyword_argument', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'maximum_depth'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'maximum_depth'}; {'id': '132', 'type': 'for_statement', 'children': ['133', '137', '138']}, {'id': '133', 'type': 'pattern_list', 'children': ['134', '135', '136']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'dirs'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'walker'}; {'id': '138', 'type': 'block', 'children': ['139']}, {'id': '139', 'type': 'for_statement', 'children': ['140', '141', '142']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'file_'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '142', 'type': 'block', 'children': ['143', '155', '167']}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'path_full'}; {'id': '146', 'type': 'call', 'children': ['147', '152']}, {'id': '147', 'type': 'attribute', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '152', 'type': 'argument_list', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'file_'}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'assignment', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'path_suffix'}; {'id': '158', 'type': 'call', 'children': ['159', '164']}, {'id': '159', 'type': 'attribute', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'relpath'}; {'id': '164', 'type': 'argument_list', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'path_full'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'assignment', 'children': ['169', '174']}, {'id': '169', 'type': 'subscript', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'path_map'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'path_suffix'}

def update(self, *sources, follow_symlinks: bool=False, maximum_depth: int=20): for source in sources: if isinstance(source, self.klass): self.path_map[source.this.name.value] = source self.class_cache[source.this.name.value] = source continue source = str(source) if source.lower().endswith(('.zip', '.jar')): zf = ZipFile(source, 'r') self.path_map.update(zip(zf.namelist(), repeat(zf))) elif os.path.isdir(source): walker = _walk( source, follow_links=follow_symlinks, maximum_depth=maximum_depth ) for root, dirs, files in walker: for file_ in files: path_full = os.path.join(root, file_) path_suffix = os.path.relpath(path_full, source) self.path_map[path_suffix] = path_full

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'error_view'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'template_dir'}; {'id': '6', 'type': 'None', 'children': []}, {'id': '7', 'type': 'block', 'children': ['8', '16', '22', '212']}; {'id': '8', 'type': 'if_statement', 'children': ['9', '11']}, {'id': '9', 'type': 'not_operator', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'template_dir'}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'template_dir'}, {'id': '15', 'type': 'string', 'children': [], 'value': '"Pylot/Error"'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'template_page'}, {'id': '19', 'type': 'binary_operator', 'children': ['20', '21'], 'value': '%'}; {'id': '20', 'type': 'string', 'children': [], 'value': '"%s/index.html"'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'template_dir'}; {'id': '22', 'type': 'class_definition', 'children': ['23', '24', '26']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'Error'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'Pylot'}; {'id': '26', 'type': 'block', 'children': ['27', '177']}, {'id': '27', 'type': 'decorated_definition', 'children': ['28', '30']}; {'id': '28', 'type': 'decorator', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'classmethod'}; {'id': '30', 'type': 'function_definition', 'children': ['31', '32', '37']}, {'id': '31', 'type': 'function_name', 'children': [], 'value': 'register'}; {'id': '32', 'type': 'parameters', 'children': ['33', '34', '35']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '35', 'type': 'dictionary_splat_pattern', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '37', 'type': 'block', 'children': ['38', '51', '72', '93', '114', '135', '156']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '47']}; {'id': '40', 'type': 'attribute', 'children': ['41', '46']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'super'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'register'}, {'id': '47', 'type': 'argument_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '49', 'type': 'dictionary_splat', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '51', 'type': 'decorated_definition', 'children': ['52', '59']}; {'id': '52', 'type': 'decorator', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'errorhandler'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'integer', 'children': [], 'value': '400'}, {'id': '59', 'type': 'function_definition', 'children': ['60', '61', '63']}; {'id': '60', 'type': 'function_name', 'children': [], 'value': 'error_400'}, {'id': '61', 'type': 'parameters', 'children': ['62']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'return_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '400'}; {'id': '72', 'type': 'decorated_definition', 'children': ['73', '80']}, {'id': '73', 'type': 'decorator', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'errorhandler'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'integer', 'children': [], 'value': '401'}; {'id': '80', 'type': 'function_definition', 'children': ['81', '82', '84']}, {'id': '81', 'type': 'function_name', 'children': [], 'value': 'error_401'}; {'id': '82', 'type': 'parameters', 'children': ['83']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '84', 'type': 'block', 'children': ['85']}, {'id': '85', 'type': 'return_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '401'}, {'id': '93', 'type': 'decorated_definition', 'children': ['94', '101']}; {'id': '94', 'type': 'decorator', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'errorhandler'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'integer', 'children': [], 'value': '403'}, {'id': '101', 'type': 'function_definition', 'children': ['102', '103', '105']}; {'id': '102', 'type': 'function_name', 'children': [], 'value': 'error_403'}, {'id': '103', 'type': 'parameters', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'return_statement', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '111', 'type': 'argument_list', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '113', 'type': 'integer', 'children': [], 'value': '403'}; {'id': '114', 'type': 'decorated_definition', 'children': ['115', '122']}, {'id': '115', 'type': 'decorator', 'children': ['116']}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'errorhandler'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'integer', 'children': [], 'value': '404'}; {'id': '122', 'type': 'function_definition', 'children': ['123', '124', '126']}, {'id': '123', 'type': 'function_name', 'children': [], 'value': 'error_404'}; {'id': '124', 'type': 'parameters', 'children': ['125']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '126', 'type': 'block', 'children': ['127']}, {'id': '127', 'type': 'return_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '132', 'type': 'argument_list', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '134', 'type': 'integer', 'children': [], 'value': '404'}, {'id': '135', 'type': 'decorated_definition', 'children': ['136', '143']}; {'id': '136', 'type': 'decorator', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'errorhandler'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'integer', 'children': [], 'value': '500'}, {'id': '143', 'type': 'function_definition', 'children': ['144', '145', '147']}; {'id': '144', 'type': 'function_name', 'children': [], 'value': 'error_500'}, {'id': '145', 'type': 'parameters', 'children': ['146']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '147', 'type': 'block', 'children': ['148']}; {'id': '148', 'type': 'return_statement', 'children': ['149']}, {'id': '149', 'type': 'call', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '153', 'type': 'argument_list', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '155', 'type': 'integer', 'children': [], 'value': '500'}; {'id': '156', 'type': 'decorated_definition', 'children': ['157', '164']}, {'id': '157', 'type': 'decorator', 'children': ['158']}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'errorhandler'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'integer', 'children': [], 'value': '503'}; {'id': '164', 'type': 'function_definition', 'children': ['165', '166', '168']}, {'id': '165', 'type': 'function_name', 'children': [], 'value': 'error_503'}; {'id': '166', 'type': 'parameters', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '168', 'type': 'block', 'children': ['169']}, {'id': '169', 'type': 'return_statement', 'children': ['170']}; {'id': '170', 'type': 'call', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '174', 'type': 'argument_list', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '176', 'type': 'integer', 'children': [], 'value': '503'}, {'id': '177', 'type': 'decorated_definition', 'children': ['178', '180']}; {'id': '178', 'type': 'decorator', 'children': ['179']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'classmethod'}; {'id': '180', 'type': 'function_definition', 'children': ['181', '182', '186']}, {'id': '181', 'type': 'function_name', 'children': [], 'value': 'index'}; {'id': '182', 'type': 'parameters', 'children': ['183', '184', '185']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '186', 'type': 'block', 'children': ['187', '198']}, {'id': '187', 'type': 'expression_statement', 'children': ['188']}; {'id': '188', 'type': 'call', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'meta_'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'keyword_argument', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'title'}, {'id': '195', 'type': 'binary_operator', 'children': ['196', '197'], 'value': '%'}; {'id': '196', 'type': 'string', 'children': [], 'value': '"Error %s"'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '198', 'type': 'return_statement', 'children': ['199']}, {'id': '199', 'type': 'expression_list', 'children': ['200', '211']}; {'id': '200', 'type': 'call', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'render'}; {'id': '204', 'type': 'argument_list', 'children': ['205', '208']}, {'id': '205', 'type': 'keyword_argument', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '208', 'type': 'keyword_argument', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'view_template'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'template_page'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '212', 'type': 'return_statement', 'children': ['213']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'Error'}

def error_view(template_dir=None): if not template_dir: template_dir = "Pylot/Error" template_page = "%s/index.html" % template_dir class Error(Pylot): @classmethod def register(cls, app, **kwargs): super(cls, cls).register(app, **kwargs) @app.errorhandler(400) def error_400(error): return cls.index(error, 400) @app.errorhandler(401) def error_401(error): return cls.index(error, 401) @app.errorhandler(403) def error_403(error): return cls.index(error, 403) @app.errorhandler(404) def error_404(error): return cls.index(error, 404) @app.errorhandler(500) def error_500(error): return cls.index(error, 500) @app.errorhandler(503) def error_503(error): return cls.index(error, 503) @classmethod def index(cls, error, code): cls.meta_(title="Error %s" % code) return cls.render(error=error, view_template=template_page), code return Error

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'update_device_list'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'sessions'}; {'id': '6', 'type': 'block', 'children': ['7', '20', '24', '28', '32', '217', '262']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '11']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': 'is'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sessions'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12', '19']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': '_LOGGER'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'string', 'children': [], 'value': "'Error updating Emby devices.'"}, {'id': '19', 'type': 'return_statement', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'new_devices'}, {'id': '23', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'active_devices'}, {'id': '27', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'dev_update'}, {'id': '31', 'type': 'False', 'children': []}; {'id': '32', 'type': 'for_statement', 'children': ['33', '34', '35']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'device'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'sessions'}, {'id': '35', 'type': 'block', 'children': ['36', '50', '74', '81']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'dev_name'}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'string', 'children': [], 'value': "'{}.{}'"}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '47']}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'device'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'DeviceId'"}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'device'}, {'id': '49', 'type': 'string', 'children': [], 'value': "'Client'"}; {'id': '50', 'type': 'try_statement', 'children': ['51', '70']}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': '_LOGGER'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '57', 'type': 'argument_list', 'children': ['58', '59', '60', '65']}; {'id': '58', 'type': 'string', 'children': [], 'value': "'Session msg on %s of type: %s, themeflag: %s'"}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'dev_name'}; {'id': '60', 'type': 'subscript', 'children': ['61', '64']}, {'id': '61', 'type': 'subscript', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'device'}, {'id': '63', 'type': 'string', 'children': [], 'value': "'NowPlayingItem'"}; {'id': '64', 'type': 'string', 'children': [], 'value': "'Type'"}, {'id': '65', 'type': 'subscript', 'children': ['66', '69']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'device'}; {'id': '68', 'type': 'string', 'children': [], 'value': "'NowPlayingItem'"}, {'id': '69', 'type': 'string', 'children': [], 'value': "'IsThemeMedia'"}; {'id': '70', 'type': 'except_clause', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'KeyError'}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'pass_statement', 'children': []}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'active_devices'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'dev_name'}, {'id': '81', 'type': 'if_statement', 'children': ['82', '99', '131']}; {'id': '82', 'type': 'boolean_operator', 'children': ['83', '88', '89'], 'value': 'and'}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '85'], 'value': 'not'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'dev_name'}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': '_devices'}; {'id': '88', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '89', 'type': 'comparison_operator', 'children': ['90', '93'], 'value': '!='}; {'id': '90', 'type': 'subscript', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'device'}; {'id': '92', 'type': 'string', 'children': [], 'value': "'DeviceId'"}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': '_api_id'}, {'id': '99', 'type': 'block', 'children': ['100', '108', '116', '124']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': '_LOGGER'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '105', 'type': 'argument_list', 'children': ['106', '107']}; {'id': '106', 'type': 'string', 'children': [], 'value': "'New Emby DeviceID: %s. Adding to device list.'"}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'dev_name'}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'assignment', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'new'}, {'id': '111', 'type': 'call', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'EmbyDevice'}, {'id': '113', 'type': 'argument_list', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'device'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '123']}; {'id': '118', 'type': 'subscript', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': '_devices'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'dev_name'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'new'}; {'id': '124', 'type': 'expression_statement', 'children': ['125']}, {'id': '125', 'type': 'call', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'new_devices'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'new'}, {'id': '131', 'type': 'elif_clause', 'children': ['132', '142']}; {'id': '132', 'type': 'comparison_operator', 'children': ['133', '136'], 'value': '!='}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'device'}, {'id': '135', 'type': 'string', 'children': [], 'value': "'DeviceId'"}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': '_api_id'}; {'id': '142', 'type': 'block', 'children': ['143', '157', '171', '182', '193', '207']}, {'id': '143', 'type': 'if_statement', 'children': ['144', '152']}; {'id': '144', 'type': 'not_operator', 'children': ['145']}, {'id': '145', 'type': 'attribute', 'children': ['146', '151']}; {'id': '146', 'type': 'subscript', 'children': ['147', '150']}, {'id': '147', 'type': 'attribute', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': '_devices'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'dev_name'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'is_active'}; {'id': '152', 'type': 'block', 'children': ['153']}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'dev_update'}; {'id': '156', 'type': 'True', 'children': []}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'do_update'}; {'id': '160', 'type': 'call', 'children': ['161', '164']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'update_check'}; {'id': '164', 'type': 'argument_list', 'children': ['165', '170']}, {'id': '165', 'type': 'subscript', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': '_devices'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'dev_name'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'device'}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'call', 'children': ['173', '180']}, {'id': '173', 'type': 'attribute', 'children': ['174', '179']}; {'id': '174', 'type': 'subscript', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': '_devices'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'dev_name'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'update_data'}; {'id': '180', 'type': 'argument_list', 'children': ['181']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'device'}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'call', 'children': ['184', '191']}; {'id': '184', 'type': 'attribute', 'children': ['185', '190']}, {'id': '185', 'type': 'subscript', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': '_devices'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'dev_name'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'set_active'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'True', 'children': []}, {'id': '193', 'type': 'if_statement', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'dev_update'}, {'id': '195', 'type': 'block', 'children': ['196', '203']}; {'id': '196', 'type': 'expression_statement', 'children': ['197']}, {'id': '197', 'type': 'call', 'children': ['198', '201']}; {'id': '198', 'type': 'attribute', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': '_do_new_devices_callback'}, {'id': '201', 'type': 'argument_list', 'children': ['202']}; {'id': '202', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'assignment', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'dev_update'}; {'id': '206', 'type': 'False', 'children': []}, {'id': '207', 'type': 'if_statement', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'do_update'}, {'id': '209', 'type': 'block', 'children': ['210']}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'call', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': '_do_update_callback'}, {'id': '215', 'type': 'argument_list', 'children': ['216']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'dev_name'}, {'id': '217', 'type': 'for_statement', 'children': ['218', '219', '222']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'dev_id'}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': '_devices'}; {'id': '222', 'type': 'block', 'children': ['223']}, {'id': '223', 'type': 'if_statement', 'children': ['224', '227']}; {'id': '224', 'type': 'comparison_operator', 'children': ['225', '226'], 'value': 'not'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'dev_id'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'active_devices'}, {'id': '227', 'type': 'block', 'children': ['228']}; {'id': '228', 'type': 'if_statement', 'children': ['229', '236']}, {'id': '229', 'type': 'attribute', 'children': ['230', '235']}; {'id': '230', 'type': 'subscript', 'children': ['231', '234']}, {'id': '231', 'type': 'attribute', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': '_devices'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'dev_id'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'is_active'}; {'id': '236', 'type': 'block', 'children': ['237', '248', '255']}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '246']}, {'id': '239', 'type': 'attribute', 'children': ['240', '245']}; {'id': '240', 'type': 'subscript', 'children': ['241', '244']}, {'id': '241', 'type': 'attribute', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': '_devices'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'dev_id'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'set_active'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'False', 'children': []}; {'id': '248', 'type': 'expression_statement', 'children': ['249']}, {'id': '249', 'type': 'call', 'children': ['250', '253']}; {'id': '250', 'type': 'attribute', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': '_do_update_callback'}, {'id': '253', 'type': 'argument_list', 'children': ['254']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'dev_id'}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'call', 'children': ['257', '260']}, {'id': '257', 'type': 'attribute', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': '_do_stale_devices_callback'}; {'id': '260', 'type': 'argument_list', 'children': ['261']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'dev_id'}; {'id': '262', 'type': 'if_statement', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'new_devices'}; {'id': '264', 'type': 'block', 'children': ['265']}, {'id': '265', 'type': 'expression_statement', 'children': ['266']}; {'id': '266', 'type': 'call', 'children': ['267', '270']}, {'id': '267', 'type': 'attribute', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': '_do_new_devices_callback'}; {'id': '270', 'type': 'argument_list', 'children': ['271']}, {'id': '271', 'type': 'integer', 'children': [], 'value': '0'}

def update_device_list(self, sessions): if sessions is None: _LOGGER.error('Error updating Emby devices.') return new_devices = [] active_devices = [] dev_update = False for device in sessions: dev_name = '{}.{}'.format(device['DeviceId'], device['Client']) try: _LOGGER.debug('Session msg on %s of type: %s, themeflag: %s', dev_name, device['NowPlayingItem']['Type'], device['NowPlayingItem']['IsThemeMedia']) except KeyError: pass active_devices.append(dev_name) if dev_name not in self._devices and \ device['DeviceId'] != str(self._api_id): _LOGGER.debug('New Emby DeviceID: %s. Adding to device list.', dev_name) new = EmbyDevice(device, self) self._devices[dev_name] = new new_devices.append(new) elif device['DeviceId'] != str(self._api_id): if not self._devices[dev_name].is_active: dev_update = True do_update = self.update_check( self._devices[dev_name], device) self._devices[dev_name].update_data(device) self._devices[dev_name].set_active(True) if dev_update: self._do_new_devices_callback(0) dev_update = False if do_update: self._do_update_callback(dev_name) for dev_id in self._devices: if dev_id not in active_devices: if self._devices[dev_id].is_active: self._devices[dev_id].set_active(False) self._do_update_callback(dev_id) self._do_stale_devices_callback(dev_id) if new_devices: self._do_new_devices_callback(0)

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{'id': '256', 'type': 'call', 'children': ['257', '260']}, {'id': '257', 'type': 'attribute', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'filelist'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '260', 'type': 'argument_list', 'children': ['261']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '262', 'type': 'if_statement', 'children': ['263', '271']}, {'id': '263', 'type': 'call', 'children': ['264', '269']}; {'id': '264', 'type': 'attribute', 'children': ['265', '268']}, {'id': '265', 'type': 'attribute', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'isdir'}, {'id': '269', 'type': 'argument_list', 'children': ['270']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '271', 'type': 'block', 'children': ['272', '286']}; {'id': '272', 'type': 'if_statement', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'archive'}; {'id': '274', 'type': 'block', 'children': ['275']}, {'id': '275', 'type': 'expression_statement', 'children': ['276']}; {'id': '276', 'type': 'call', 'children': ['277', '280']}, {'id': '277', 'type': 'attribute', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'shutil'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'copytree'}; {'id': '280', 'type': 'argument_list', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '282', 'type': 'call', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'rename'}; {'id': '284', 'type': 'argument_list', 'children': ['285']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '286', 'type': 'expression_statement', 'children': ['287']}, {'id': '287', 'type': 'call', 'children': ['288', '291']}; {'id': '288', 'type': 'attribute', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'filelist'}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'extend'}, {'id': '291', 'type': 'argument_list', 'children': ['292']}; {'id': '292', 'type': 'call', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '294', 'type': 'argument_list', 'children': ['295']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '296', 'type': 'function_definition', 'children': ['297', '298', '300']}, {'id': '297', 'type': 'function_name', 'children': [], 'value': 'ispy'}; {'id': '298', 'type': 'parameters', 'children': ['299']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '300', 'type': 'block', 'children': ['301']}, {'id': '301', 'type': 'return_statement', 'children': ['302']}; {'id': '302', 'type': 'parenthesized_expression', 'children': ['303'], 'value': '()'}, {'id': '303', 'type': 'boolean_operator', 'children': ['304', '312'], 'value': 'and'}; {'id': '304', 'type': 'call', 'children': ['305', '310']}, {'id': '305', 'type': 'attribute', 'children': ['306', '309']}; {'id': '306', 'type': 'attribute', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'isfile'}; {'id': '310', 'type': 'argument_list', 'children': ['311']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '312', 'type': 'parenthesized_expression', 'children': ['313'], 'value': '()'}, {'id': '313', 'type': 'comparison_operator', 'children': ['314', '324'], 'value': 'in'}; {'id': '314', 'type': 'subscript', 'children': ['315', '323']}, {'id': '315', 'type': 'call', 'children': ['316', '321']}; {'id': '316', 'type': 'attribute', 'children': ['317', '320']}, {'id': '317', 'type': 'attribute', 'children': ['318', '319']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'splitext'}, {'id': '321', 'type': 'argument_list', 'children': ['322']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '323', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '324', 'type': 'tuple', 'children': ['325', '326']}, {'id': '325', 'type': 'string', 'children': [], 'value': "'.py'"}; {'id': '326', 'type': 'string', 'children': [], 'value': "'.pyw'"}, {'id': '327', 'type': 'expression_statement', 'children': ['328']}; {'id': '328', 'type': 'assignment', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'filelist'}; {'id': '330', 'type': 'call', 'children': ['331', '332']}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '332', 'type': 'argument_list', 'children': ['333']}, {'id': '333', 'type': 'call', 'children': ['334', '335']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '335', 'type': 'argument_list', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'ispy'}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'filelist'}; {'id': '338', 'type': 'if_statement', 'children': ['339', '345']}, {'id': '339', 'type': 'comparison_operator', 'children': ['340', '344'], 'value': '=='}; {'id': '340', 'type': 'call', 'children': ['341', '342']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '342', 'type': 'argument_list', 'children': ['343']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'filelist'}; {'id': '344', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '345', 'type': 'block', 'children': ['346']}; {'id': '346', 'type': 'expression_statement', 'children': ['347']}, {'id': '347', 'type': 'call', 'children': ['348', '351']}; {'id': '348', 'type': 'attribute', 'children': ['349', '350']}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '351', 'type': 'argument_list', 'children': ['352']}; {'id': '352', 'type': 'string', 'children': [], 'value': "'argument PATH: no valid source file found'"}, {'id': '353', 'type': 'if_statement', 'children': ['354', '361', '371']}; {'id': '354', 'type': 'boolean_operator', 'children': ['355', '358'], 'value': 'or'}, {'id': '355', 'type': 'comparison_operator', 'children': ['356', '357'], 'value': 'is'}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'mp'}, {'id': '357', 'type': 'None', 'children': []}; {'id': '358', 'type': 'comparison_operator', 'children': ['359', '360'], 'value': '<='}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'CPU_CNT'}; {'id': '360', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '361', 'type': 'block', 'children': ['362']}; {'id': '362', 'type': 'expression_statement', 'children': ['363']}, {'id': '363', 'type': 'list_comprehension', 'children': ['364', '368']}; {'id': '364', 'type': 'call', 'children': ['365', '366']}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'f2format'}; {'id': '366', 'type': 'argument_list', 'children': ['367']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '368', 'type': 'for_in_clause', 'children': ['369', '370']}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '370', 'type': 'identifier', 'children': [], 'value': 'filelist'}, {'id': '371', 'type': 'else_clause', 'children': ['372']}; {'id': '372', 'type': 'block', 'children': ['373']}, {'id': '373', 'type': 'expression_statement', 'children': ['374']}; {'id': '374', 'type': 'call', 'children': ['375', '385']}, {'id': '375', 'type': 'attribute', 'children': ['376', '384']}; {'id': '376', 'type': 'call', 'children': ['377', '380']}, {'id': '377', 'type': 'attribute', 'children': ['378', '379']}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'mp'}, {'id': '379', 'type': 'identifier', 'children': [], 'value': 'Pool'}; {'id': '380', 'type': 'argument_list', 'children': ['381']}, {'id': '381', 'type': 'keyword_argument', 'children': ['382', '383']}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'processes'}, {'id': '383', 'type': 'identifier', 'children': [], 'value': 'CPU_CNT'}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'map'}, {'id': '385', 'type': 'argument_list', 'children': ['386', '387']}; {'id': '386', 'type': 'identifier', 'children': [], 'value': 'f2format'}, {'id': '387', 'type': 'identifier', 'children': [], 'value': 'filelist'}

def main(): parser = get_parser() args = parser.parse_args() ARCHIVE = args.archive_path archive = (not args.no_archive) os.environ['F2FORMAT_VERSION'] = args.python os.environ['F2FORMAT_ENCODING'] = args.encoding def find(root): flst = list() temp = os.listdir(root) for file in temp: path = os.path.join(root, file) if os.path.isdir(path): flst.extend(find(path)) elif os.path.isfile(path): flst.append(path) elif os.path.islink(path): continue yield from flst def rename(path): stem, ext = os.path.splitext(path) name = '%s-%s%s' % (stem, uuid.uuid4(), ext) return os.path.join(ARCHIVE, name) if archive: os.makedirs(ARCHIVE, exist_ok=True) filelist = list() for path in sys.argv[1:]: if os.path.isfile(path): if archive: dest = rename(path) os.makedirs(os.path.dirname(dest), exist_ok=True) shutil.copy(path, dest) filelist.append(path) if os.path.isdir(path): if archive: shutil.copytree(path, rename(path)) filelist.extend(find(path)) def ispy(file): return (os.path.isfile(file) and (os.path.splitext(file)[1] in ('.py', '.pyw'))) filelist = sorted(filter(ispy, filelist)) if len(filelist) == 0: parser.error('argument PATH: no valid source file found') if mp is None or CPU_CNT <= 1: [f2format(filename) for filename in filelist] else: mp.Pool(processes=CPU_CNT).map(f2format, filelist)

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{'id': '16', 'type': 'identifier', 'children': [], 'value': '__version__'}, {'id': '17', 'type': 'if_statement', 'children': ['18', '23', '29']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'basestring'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'filenames'}, {'id': '27', 'type': 'list', 'children': ['28'], 'value': '[filename]'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '29', 'type': 'else_clause', 'children': ['30']}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'filenames'}; {'id': '34', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '35', 'type': 'if_statement', 'children': ['36', '39']}; {'id': '36', 'type': 'boolean_operator', 'children': ['37', '38'], 'value': 'and'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'UAFILE'}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'filenames'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'UAFILE'}, {'id': '47', 'type': 'for_statement', 'children': ['48', '49', '50', '86']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'filenames'}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'try_statement', 'children': ['52', '83']}; {'id': '52', 'type': 'block', 'children': ['53', '62']}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'st'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'stat'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '62', 'type': 'if_statement', 'children': ['63', '81']}, {'id': '63', 'type': 'boolean_operator', 'children': ['64', '72'], 'value': 'and'}; {'id': '64', 'type': 'call', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'stat'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'S_ISREG'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'st'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'st_mode'}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'access'}; {'id': '76', 'type': 'argument_list', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'R_OK'}, {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'break_statement', 'children': []}, {'id': '83', 'type': 'except_clause', 'children': ['84']}; {'id': '84', 'type': 'block', 'children': ['85']}, {'id': '85', 'type': 'pass_statement', 'children': []}; {'id': '86', 'type': 'else_clause', 'children': ['87']}, {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'return_statement', 'children': ['89']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'default_ua'}; {'id': '90', 'type': 'with_statement', 'children': ['91', '101']}, {'id': '91', 'type': 'with_clause', 'children': ['92']}; {'id': '92', 'type': 'with_item', 'children': ['93']}, {'id': '93', 'type': 'as_pattern', 'children': ['94', '99']}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '96', 'type': 'argument_list', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '98', 'type': 'string', 'children': [], 'value': "'rb'"}, {'id': '99', 'type': 'as_pattern_target', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '101', 'type': 'block', 'children': ['102', '108', '112', '120']}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'filesize'}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'st'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'st_size'}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'assignment', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'pos'}, {'id': '111', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'Random'}, {'id': '119', 'type': 'argument_list', 'children': []}; {'id': '120', 'type': 'for_statement', 'children': ['121', '122', '126']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '126', 'type': 'block', 'children': ['127', '137', '141', '148', '154', '162', '190', '198']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'augmented_assignment', 'children': ['129', '130'], 'value': '+='}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '130', 'type': 'call', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'randint'}; {'id': '134', 'type': 'argument_list', 'children': ['135', '136']}, {'id': '135', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'filesize'}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'augmented_assignment', 'children': ['139', '140'], 'value': '%='}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'filesize'}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'call', 'children': ['143', '146']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'seek'}; {'id': '146', 'type': 'argument_list', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'call', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'readline'}, {'id': '153', 'type': 'argument_list', 'children': []}; {'id': '154', 'type': 'expression_statement', 'children': ['155']}, {'id': '155', 'type': 'assignment', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'readline'}, {'id': '161', 'type': 'argument_list', 'children': []}; {'id': '162', 'type': 'if_statement', 'children': ['163', '165']}, {'id': '163', 'type': 'not_operator', 'children': ['164']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '165', 'type': 'block', 'children': ['166']}; {'id': '166', 'type': 'if_statement', 'children': ['167', '174']}, {'id': '167', 'type': 'comparison_operator', 'children': ['168', '173'], 'value': '=='}; {'id': '168', 'type': 'call', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'tell'}; {'id': '172', 'type': 'argument_list', 'children': []}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'filesize'}; {'id': '174', 'type': 'block', 'children': ['175', '182']}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'call', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'seek'}; {'id': '180', 'type': 'argument_list', 'children': ['181']}, {'id': '181', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'readline'}, {'id': '189', 'type': 'argument_list', 'children': []}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'assignment', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '193', 'type': 'call', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '197', 'type': 'argument_list', 'children': []}; {'id': '198', 'type': 'ERROR', 'children': ['199', '200', '203', '204']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '200', 'type': 'subscript', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '202', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'return'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '205', 'type': 'return_statement', 'children': ['206']}

def random_useragent(filename=True): import random default_ua = 'urlfetch/%s' % __version__ if isinstance(filename, basestring): filenames = [filename] else: filenames = [] if filename and UAFILE: filenames.append(UAFILE) for filename in filenames: try: st = os.stat(filename) if stat.S_ISREG(st.st_mode) and os.access(filename, os.R_OK): break except: pass else: return default_ua with open(filename, 'rb') as f: filesize = st.st_size pos = 0 r = random.Random() for i in range(3): pos += r.randint(0, filesize) pos %= filesize f.seek(pos) f.readline() line = f.readline() if not line: if f.tell() == filesize: f.seek(0) line = f.readline() line = line.strip() if line and line[0] != ' return line return default_ua

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'encode_multipart'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '6', 'type': 'block', 'children': ['7', '13', '19', '28', '39', '153', '329', '343', '349']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'BytesIO'}; {'id': '12', 'type': 'argument_list', 'children': []}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'boundary'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'choose_boundary'}; {'id': '18', 'type': 'argument_list', 'children': []}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'part_boundary'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'binary_operator', 'children': ['26', '27'], 'value': '%'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'--%s\\r\\n'"}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'boundary'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'writer'}, {'id': '31', 'type': 'subscript', 'children': ['32', '38']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'codecs'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'lookup'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'string', 'children': [], 'value': "'utf-8'"}; {'id': '38', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '39', 'type': 'if_statement', 'children': ['40', '45']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'for_statement', 'children': ['47', '50', '55']}, {'id': '47', 'type': 'pattern_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '54', 'type': 'argument_list', 'children': []}, {'id': '55', 'type': 'block', 'children': ['56', '72']}; {'id': '56', 'type': 'if_statement', 'children': ['57', '66']}, {'id': '57', 'type': 'not_operator', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '62', 'type': 'tuple', 'children': ['63', '64', '65']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '70', 'type': 'tuple', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '72', 'type': 'for_statement', 'children': ['73', '74', '75']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '75', 'type': 'block', 'children': ['76', '83', '97', '104', '118', '146']}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'part_boundary'}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'call', 'children': ['85', '91']}, {'id': '85', 'type': 'attribute', 'children': ['86', '90']}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'writer'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'binary_operator', 'children': ['93', '96'], 'value': '%'}, {'id': '93', 'type': 'concatenated_string', 'children': ['94', '95']}; {'id': '94', 'type': 'string', 'children': [], 'value': "'Content-Disposition: form-data; '"}, {'id': '95', 'type': 'string', 'children': [], 'value': '\'name="%s"\\r\\n\''}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '102']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'string', 'children': [], 'value': "b'Content-Type: text/plain\\r\\n\\r\\n'"}; {'id': '104', 'type': 'if_statement', 'children': ['105', '110']}, {'id': '105', 'type': 'call', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '107', 'type': 'argument_list', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '114', 'type': 'call', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '118', 'type': 'if_statement', 'children': ['119', '126', '137']}, {'id': '119', 'type': 'boolean_operator', 'children': ['120', '121'], 'value': 'and'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'py3k'}, {'id': '121', 'type': 'call', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '123', 'type': 'argument_list', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '126', 'type': 'block', 'children': ['127']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '135']}, {'id': '129', 'type': 'attribute', 'children': ['130', '134']}; {'id': '130', 'type': 'call', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'writer'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '137', 'type': 'else_clause', 'children': ['138']}; {'id': '138', 'type': 'block', 'children': ['139']}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'call', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '144', 'type': 'argument_list', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'string', 'children': [], 'value': "b'\\r\\n'"}, {'id': '153', 'type': 'for_statement', 'children': ['154', '157', '162']}; {'id': '154', 'type': 'pattern_list', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'fieldname'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '161', 'type': 'argument_list', 'children': []}; {'id': '162', 'type': 'block', 'children': ['163', '203', '238', '245', '294', '322']}, {'id': '163', 'type': 'if_statement', 'children': ['164', '169', '176', '192']}; {'id': '164', 'type': 'call', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '166', 'type': 'argument_list', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '169', 'type': 'block', 'children': ['170']}; {'id': '170', 'type': 'expression_statement', 'children': ['171']}, {'id': '171', 'type': 'assignment', 'children': ['172', '175']}; {'id': '172', 'type': 'pattern_list', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '176', 'type': 'elif_clause', 'children': ['177', '182']}, {'id': '177', 'type': 'call', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '179', 'type': 'argument_list', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '181', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '182', 'type': 'block', 'children': ['183']}, {'id': '183', 'type': 'expression_statement', 'children': ['184']}; {'id': '184', 'type': 'assignment', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '186', 'type': 'call', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '192', 'type': 'else_clause', 'children': ['193']}, {'id': '193', 'type': 'block', 'children': ['194', '198']}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'assignment', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '197', 'type': 'None', 'children': []}; {'id': '198', 'type': 'raise_statement', 'children': ['199']}, {'id': '199', 'type': 'call', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'UrlfetchException'}, {'id': '201', 'type': 'argument_list', 'children': ['202']}; {'id': '202', 'type': 'string', 'children': [], 'value': '"file must has filename"'}, {'id': '203', 'type': 'if_statement', 'children': ['204', '209', '218', '229']}; {'id': '204', 'type': 'call', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '206', 'type': 'argument_list', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '208', 'type': 'string', 'children': [], 'value': "'read'"}, {'id': '209', 'type': 'block', 'children': ['210']}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'assignment', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '213', 'type': 'call', 'children': ['214', '217']}; {'id': '214', 'type': 'attribute', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '217', 'type': 'argument_list', 'children': []}; {'id': '218', 'type': 'elif_clause', 'children': ['219', '224']}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '221', 'type': 'argument_list', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'basestring'}; {'id': '224', 'type': 'block', 'children': ['225']}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'assignment', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '229', 'type': 'else_clause', 'children': ['230']}; {'id': '230', 'type': 'block', 'children': ['231']}, {'id': '231', 'type': 'expression_statement', 'children': ['232']}; {'id': '232', 'type': 'assignment', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '234', 'type': 'call', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '236', 'type': 'argument_list', 'children': ['237']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '243', 'type': 'argument_list', 'children': ['244']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'part_boundary'}, {'id': '245', 'type': 'if_statement', 'children': ['246', '247', '271']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '247', 'type': 'block', 'children': ['248', '264']}; {'id': '248', 'type': 'expression_statement', 'children': ['249']}, {'id': '249', 'type': 'call', 'children': ['250', '256']}; {'id': '250', 'type': 'attribute', 'children': ['251', '255']}, {'id': '251', 'type': 'call', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'writer'}, {'id': '253', 'type': 'argument_list', 'children': ['254']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '256', 'type': 'argument_list', 'children': ['257']}, {'id': '257', 'type': 'binary_operator', 'children': ['258', '261'], 'value': '%'}; {'id': '258', 'type': 'concatenated_string', 'children': ['259', '260']}, {'id': '259', 'type': 'string', 'children': [], 'value': '\'Content-Disposition: form-data; name="%s"; \''}; {'id': '260', 'type': 'string', 'children': [], 'value': '\'filename="%s"\\r\\n\''}, {'id': '261', 'type': 'tuple', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'fieldname'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '264', 'type': 'expression_statement', 'children': ['265']}, {'id': '265', 'type': 'call', 'children': ['266', '269']}; {'id': '266', 'type': 'attribute', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '269', 'type': 'argument_list', 'children': ['270']}; {'id': '270', 'type': 'string', 'children': [], 'value': "b'Content-Type: application/octet-stream\\r\\n\\r\\n'"}, {'id': '271', 'type': 'else_clause', 'children': ['272']}; {'id': '272', 'type': 'block', 'children': ['273', '287']}, {'id': '273', 'type': 'expression_statement', 'children': ['274']}; {'id': '274', 'type': 'call', 'children': ['275', '281']}, {'id': '275', 'type': 'attribute', 'children': ['276', '280']}; {'id': '276', 'type': 'call', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'writer'}; {'id': '278', 'type': 'argument_list', 'children': ['279']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '281', 'type': 'argument_list', 'children': ['282']}; {'id': '282', 'type': 'binary_operator', 'children': ['283', '286'], 'value': '%'}, {'id': '283', 'type': 'concatenated_string', 'children': ['284', '285']}; {'id': '284', 'type': 'string', 'children': [], 'value': '\'Content-Disposition: form-data; name="%s"\''}, {'id': '285', 'type': 'string', 'children': [], 'value': "'\\r\\n'"}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '287', 'type': 'expression_statement', 'children': ['288']}; {'id': '288', 'type': 'call', 'children': ['289', '292']}, {'id': '289', 'type': 'attribute', 'children': ['290', '291']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '292', 'type': 'argument_list', 'children': ['293']}, {'id': '293', 'type': 'string', 'children': [], 'value': "b'Content-Type: text/plain\\r\\n\\r\\n'"}; {'id': '294', 'type': 'if_statement', 'children': ['295', '302', '313']}, {'id': '295', 'type': 'boolean_operator', 'children': ['296', '297'], 'value': 'and'}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'py3k'}, {'id': '297', 'type': 'call', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '299', 'type': 'argument_list', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '302', 'type': 'block', 'children': ['303']}, {'id': '303', 'type': 'expression_statement', 'children': ['304']}; {'id': '304', 'type': 'call', 'children': ['305', '311']}, {'id': '305', 'type': 'attribute', 'children': ['306', '310']}; {'id': '306', 'type': 'call', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'writer'}; {'id': '308', 'type': 'argument_list', 'children': ['309']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '311', 'type': 'argument_list', 'children': ['312']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '313', 'type': 'else_clause', 'children': ['314']}; {'id': '314', 'type': 'block', 'children': ['315']}, {'id': '315', 'type': 'expression_statement', 'children': ['316']}; {'id': '316', 'type': 'call', 'children': ['317', '320']}, {'id': '317', 'type': 'attribute', 'children': ['318', '319']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '320', 'type': 'argument_list', 'children': ['321']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '322', 'type': 'expression_statement', 'children': ['323']}, {'id': '323', 'type': 'call', 'children': ['324', '327']}; {'id': '324', 'type': 'attribute', 'children': ['325', '326']}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '327', 'type': 'argument_list', 'children': ['328']}; {'id': '328', 'type': 'string', 'children': [], 'value': "b'\\r\\n'"}, {'id': '329', 'type': 'expression_statement', 'children': ['330']}; {'id': '330', 'type': 'call', 'children': ['331', '334']}, {'id': '331', 'type': 'attribute', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '334', 'type': 'argument_list', 'children': ['335']}, {'id': '335', 'type': 'call', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '337', 'type': 'argument_list', 'children': ['338']}; {'id': '338', 'type': 'binary_operator', 'children': ['339', '342'], 'value': '+'}, {'id': '339', 'type': 'binary_operator', 'children': ['340', '341'], 'value': '+'}; {'id': '340', 'type': 'string', 'children': [], 'value': "'--'"}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'boundary'}; {'id': '342', 'type': 'string', 'children': [], 'value': "'--\\r\\n'"}, {'id': '343', 'type': 'expression_statement', 'children': ['344']}; {'id': '344', 'type': 'assignment', 'children': ['345', '346']}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'content_type'}; {'id': '346', 'type': 'binary_operator', 'children': ['347', '348'], 'value': '%'}, {'id': '347', 'type': 'string', 'children': [], 'value': "'multipart/form-data; boundary=%s'"}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'boundary'}, {'id': '349', 'type': 'return_statement', 'children': ['350']}; {'id': '350', 'type': 'expression_list', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'content_type'}; {'id': '352', 'type': 'call', 'children': ['353', '356']}, {'id': '353', 'type': 'attribute', 'children': ['354', '355']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'getvalue'}

def encode_multipart(data, files): body = BytesIO() boundary = choose_boundary() part_boundary = b('--%s\r\n' % boundary) writer = codecs.lookup('utf-8')[3] if isinstance(data, dict): for name, values in data.items(): if not isinstance(values, (list, tuple, set)): values = (values, ) for value in values: body.write(part_boundary) writer(body).write('Content-Disposition: form-data; ' 'name="%s"\r\n' % name) body.write(b'Content-Type: text/plain\r\n\r\n') if isinstance(value, int): value = str(value) if py3k and isinstance(value, str): writer(body).write(value) else: body.write(value) body.write(b'\r\n') for fieldname, f in files.items(): if isinstance(f, tuple): filename, f = f elif hasattr(f, 'name'): filename = basename(f.name) else: filename = None raise UrlfetchException("file must has filename") if hasattr(f, 'read'): value = f.read() elif isinstance(f, basestring): value = f else: value = str(f) body.write(part_boundary) if filename: writer(body).write('Content-Disposition: form-data; name="%s"; ' 'filename="%s"\r\n' % (fieldname, filename)) body.write(b'Content-Type: application/octet-stream\r\n\r\n') else: writer(body).write('Content-Disposition: form-data; name="%s"' '\r\n' % name) body.write(b'Content-Type: text/plain\r\n\r\n') if py3k and isinstance(value, str): writer(body).write(value) else: body.write(value) body.write(b'\r\n') body.write(b('--' + boundary + '--\r\n')) content_type = 'multipart/form-data; boundary=%s' % boundary return content_type, body.getvalue()

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{'id': '16', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'Label'}; {'id': '20', 'type': 'block', 'children': ['21', '28']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'final'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '28', 'type': 'continue_statement', 'children': []}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '34']}, {'id': '31', 'type': 'pattern_list', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'mnemonic'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'operands'}; {'id': '34', 'type': 'expression_list', 'children': ['35', '38']}, {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '37', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '38', 'type': 'subscript', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '40', 'type': 'slice', 'children': ['41', '42']}, {'id': '41', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '42', 'type': 'colon', 'children': []}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'operand_fmts'}; {'id': '46', 'type': 'subscript', 'children': ['47', '50']}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'opcode_table'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'mnemonic'}; {'id': '50', 'type': 'string', 'children': [], 'value': "'operands'"}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'final_operands'}; {'id': '54', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '55', 'type': 'for_statement', 'children': ['56', '59', '63']}; {'id': '56', 'type': 'pattern_list', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'if_statement', 'children': ['65', '70', '78', '100', '114', '128']}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'Operand'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'operand'}; {'id': '78', 'type': 'elif_clause', 'children': ['79', '84']}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'Constant'}; {'id': '84', 'type': 'block', 'children': ['85']}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'Operand'}, {'id': '93', 'type': 'argument_list', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'OperandTypes'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'CONSTANT_INDEX'}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '100', 'type': 'elif_clause', 'children': ['101', '106']}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '103', 'type': 'argument_list', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '106', 'type': 'block', 'children': ['107']}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'call', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'operand'}; {'id': '114', 'type': 'elif_clause', 'children': ['115', '120']}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '117', 'type': 'argument_list', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'Label'}; {'id': '120', 'type': 'block', 'children': ['121']}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'call', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'operand'}; {'id': '128', 'type': 'else_clause', 'children': ['129']}, {'id': '129', 'type': 'block', 'children': ['130']}; {'id': '130', 'type': 'expression_statement', 'children': ['131']}, {'id': '131', 'type': 'call', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'final_operands'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'Operand'}; {'id': '138', 'type': 'argument_list', 'children': ['139', '144']}, {'id': '139', 'type': 'subscript', 'children': ['140', '143']}; {'id': '140', 'type': 'subscript', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'operand_fmts'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '143', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '145', 'type': 'expression_statement', 'children': ['146']}; {'id': '146', 'type': 'call', 'children': ['147', '150']}, {'id': '147', 'type': 'attribute', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'final'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '150', 'type': 'argument_list', 'children': ['151']}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'Instruction'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'create'}, {'id': '155', 'type': 'argument_list', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'mnemonic'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'final_operands'}; {'id': '158', 'type': 'expression_statement', 'children': ['159']}, {'id': '159', 'type': 'assignment', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'label_pcs'}, {'id': '161', 'type': 'dictionary', 'children': []}; {'id': '162', 'type': 'expression_statement', 'children': ['163']}, {'id': '163', 'type': 'assignment', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'current_pc'}, {'id': '165', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '166', 'type': 'for_statement', 'children': ['167', '168', '169']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'ins'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'final'}, {'id': '169', 'type': 'block', 'children': ['170', '186']}; {'id': '170', 'type': 'if_statement', 'children': ['171', '176']}, {'id': '171', 'type': 'call', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '173', 'type': 'argument_list', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'ins'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'Label'}; {'id': '176', 'type': 'block', 'children': ['177', '185']}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'assignment', 'children': ['179', '184']}, {'id': '179', 'type': 'subscript', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'label_pcs'}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'ins'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'current_pc'}, {'id': '185', 'type': 'continue_statement', 'children': []}; {'id': '186', 'type': 'expression_statement', 'children': ['187']}, {'id': '187', 'type': 'augmented_assignment', 'children': ['188', '189'], 'value': '+='}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'current_pc'}, {'id': '189', 'type': 'call', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'ins'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'size_on_disk'}, {'id': '193', 'type': 'argument_list', 'children': ['194']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'current_pc'}, {'id': '195', 'type': 'expression_statement', 'children': ['196']}; {'id': '196', 'type': 'assignment', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'current_pc'}; {'id': '198', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '199', 'type': 'for_statement', 'children': ['200', '201', '202']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'ins'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'final'}; {'id': '202', 'type': 'block', 'children': ['203', '211', '287', '296']}, {'id': '203', 'type': 'if_statement', 'children': ['204', '209']}; {'id': '204', 'type': 'call', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '206', 'type': 'argument_list', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'ins'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'Label'}, {'id': '209', 'type': 'block', 'children': ['210']}; {'id': '210', 'type': 'continue_statement', 'children': []}, {'id': '211', 'type': 'for_statement', 'children': ['212', '215', '221']}; {'id': '212', 'type': 'pattern_list', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '215', 'type': 'call', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '217', 'type': 'argument_list', 'children': ['218']}; {'id': '218', 'type': 'attribute', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'ins'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '221', 'type': 'block', 'children': ['222']}; {'id': '222', 'type': 'if_statement', 'children': ['223', '228', '262']}, {'id': '223', 'type': 'call', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '225', 'type': 'argument_list', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'for_statement', 'children': ['230', '233', '238']}; {'id': '230', 'type': 'pattern_list', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '233', 'type': 'call', 'children': ['234', '237']}; {'id': '234', 'type': 'attribute', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'operand'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '237', 'type': 'argument_list', 'children': []}; {'id': '238', 'type': 'block', 'children': ['239']}, {'id': '239', 'type': 'if_statement', 'children': ['240', '245']}; {'id': '240', 'type': 'call', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '242', 'type': 'argument_list', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'Label'}, {'id': '245', 'type': 'block', 'children': ['246']}; {'id': '246', 'type': 'expression_statement', 'children': ['247']}, {'id': '247', 'type': 'assignment', 'children': ['248', '251']}; {'id': '248', 'type': 'subscript', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'operand'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '251', 'type': 'call', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'Operand'}, {'id': '253', 'type': 'argument_list', 'children': ['254', '255']}; {'id': '254', 'type': 'integer', 'children': [], 'value': '40'}, {'id': '255', 'type': 'binary_operator', 'children': ['256', '261'], 'value': '-'}; {'id': '256', 'type': 'subscript', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'label_pcs'}; {'id': '258', 'type': 'attribute', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'current_pc'}; {'id': '262', 'type': 'elif_clause', 'children': ['263', '268']}, {'id': '263', 'type': 'call', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '265', 'type': 'argument_list', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'Label'}; {'id': '268', 'type': 'block', 'children': ['269']}, {'id': '269', 'type': 'expression_statement', 'children': ['270']}; {'id': '270', 'type': 'assignment', 'children': ['271', '276']}, {'id': '271', 'type': 'subscript', 'children': ['272', '275']}; {'id': '272', 'type': 'attribute', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'ins'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '276', 'type': 'call', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'Operand'}; {'id': '278', 'type': 'argument_list', 'children': ['279', '280']}, {'id': '279', 'type': 'integer', 'children': [], 'value': '40'}; {'id': '280', 'type': 'binary_operator', 'children': ['281', '286'], 'value': '-'}, {'id': '281', 'type': 'subscript', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'label_pcs'}, {'id': '283', 'type': 'attribute', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'operand'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'current_pc'}, {'id': '287', 'type': 'expression_statement', 'children': ['288']}; {'id': '288', 'type': 'augmented_assignment', 'children': ['289', '290'], 'value': '+='}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'current_pc'}; {'id': '290', 'type': 'call', 'children': ['291', '294']}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'ins'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'size_on_disk'}; {'id': '294', 'type': 'argument_list', 'children': ['295']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'current_pc'}; {'id': '296', 'type': 'expression_statement', 'children': ['297']}, {'id': '297', 'type': 'yield', 'children': ['298']}

def assemble(code): final = [] for line in code: if isinstance(line, Label): final.append(line) continue mnemonic, operands = line[0], line[1:] operand_fmts = opcode_table[mnemonic]['operands'] final_operands = [] for i, operand in enumerate(operands): if isinstance(operand, Operand): final_operands.append(operand) elif isinstance(operand, Constant): final_operands.append(Operand( OperandTypes.CONSTANT_INDEX, operand.index )) elif isinstance(operand, dict): final_operands.append(operand) elif isinstance(operand, Label): final_operands.append(operand) else: final_operands.append(Operand( operand_fmts[i][1], operand )) final.append(Instruction.create(mnemonic, final_operands)) label_pcs = {} current_pc = 0 for ins in final: if isinstance(ins, Label): label_pcs[ins.name] = current_pc continue current_pc += ins.size_on_disk(current_pc) current_pc = 0 for ins in final: if isinstance(ins, Label): continue for i, operand in enumerate(ins.operands): if isinstance(operand, dict): for k, v in operand.items(): if isinstance(v, Label): operand[k] = Operand(40, label_pcs[v.name] - current_pc) elif isinstance(operand, Label): ins.operands[i] = Operand( 40, label_pcs[operand.name] - current_pc ) current_pc += ins.size_on_disk(current_pc) yield ins

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_add_new'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'host_object'}; {'id': '6', 'type': 'block', 'children': ['7', '16', '43']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': '_get_insertion_point'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'host_object'}; {'id': '16', 'type': 'for_statement', 'children': ['17', '18', '23']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'listed'}; {'id': '18', 'type': 'subscript', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'slice', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '22', 'type': 'colon', 'children': []}, {'id': '23', 'type': 'block', 'children': ['24', '34']}; {'id': '24', 'type': 'if_statement', 'children': ['25', '32']}, {'id': '25', 'type': 'not_operator', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'listed'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'is_subdomain'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'host_object'}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'break_statement', 'children': []}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '41']}; {'id': '36', 'type': 'attribute', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'hosts'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '50']}, {'id': '45', 'type': 'attribute', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'hosts'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'insert'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'host_object'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'to_unicode'}

def _add_new(self, host_object): i = self._get_insertion_point(host_object) for listed in self[i:]: if not listed.is_subdomain(host_object): break self.hosts.pop(i) self.hosts.insert(i, host_object.to_unicode())

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{'id': '16', 'type': 'identifier', 'children': [], 'value': 'opcode'}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'ins'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'operands'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'fmt_operands'}, {'id': '23', 'type': 'subscript', 'children': ['24', '27']}; {'id': '24', 'type': 'subscript', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'opcode_table'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'opcode'}, {'id': '27', 'type': 'string', 'children': [], 'value': "'operands'"}; {'id': '28', 'type': 'if_statement', 'children': ['29', '32', '90', '133', '229', '312']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'ins'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'wide'}; {'id': '32', 'type': 'block', 'children': ['33', '44', '55', '70']}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '41', 'type': 'argument_list', 'children': ['42', '43']}; {'id': '42', 'type': 'string', 'children': [], 'value': "'>B'"}, {'id': '43', 'type': 'integer', 'children': [], 'value': '0xC4'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'fout'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'pack'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '54']}, {'id': '53', 'type': 'string', 'children': [], 'value': "'>B'"}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'opcode'}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '63', 'type': 'argument_list', 'children': ['64', '65']}; {'id': '64', 'type': 'string', 'children': [], 'value': "'>H'"}, {'id': '65', 'type': 'attribute', 'children': ['66', '69']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'operands'}; {'id': '68', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '70', 'type': 'if_statement', 'children': ['71', '74']}, {'id': '71', 'type': 'comparison_operator', 'children': ['72', '73'], 'value': '=='}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'opcode'}, {'id': '73', 'type': 'integer', 'children': [], 'value': '0x84'}; {'id': '74', 'type': 'block', 'children': ['75']}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'call', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '83', 'type': 'argument_list', 'children': ['84', '85']}; {'id': '84', 'type': 'string', 'children': [], 'value': "'>h'"}, {'id': '85', 'type': 'attribute', 'children': ['86', '89']}; {'id': '86', 'type': 'subscript', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'operands'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '90', 'type': 'elif_clause', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'fmt_operands'}; {'id': '92', 'type': 'block', 'children': ['93', '104']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '101', 'type': 'argument_list', 'children': ['102', '103']}; {'id': '102', 'type': 'string', 'children': [], 'value': "'>B'"}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'opcode'}; {'id': '104', 'type': 'for_statement', 'children': ['105', '110', '114']}, {'id': '105', 'type': 'pattern_list', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '107', 'type': 'tuple_pattern', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'fmt'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '110', 'type': 'call', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'fmt_operands'}; {'id': '114', 'type': 'block', 'children': ['115']}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'call', 'children': ['122', '127']}; {'id': '122', 'type': 'attribute', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'fmt'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'attribute', 'children': ['129', '132']}, {'id': '129', 'type': 'subscript', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '133', 'type': 'elif_clause', 'children': ['134', '137']}; {'id': '134', 'type': 'comparison_operator', 'children': ['135', '136'], 'value': '=='}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'opcode'}; {'id': '136', 'type': 'integer', 'children': [], 'value': '0xAB'}, {'id': '137', 'type': 'block', 'children': ['138', '149', '160', '169', '179', '200']}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'fout'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '143', 'type': 'argument_list', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'pack'}; {'id': '146', 'type': 'argument_list', 'children': ['147', '148']}, {'id': '147', 'type': 'string', 'children': [], 'value': "'>B'"}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'opcode'}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'padding'}; {'id': '152', 'type': 'binary_operator', 'children': ['153', '154'], 'value': '-'}, {'id': '153', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '154', 'type': 'binary_operator', 'children': ['155', '159'], 'value': '%'}, {'id': '155', 'type': 'parenthesized_expression', 'children': ['156'], 'value': '()'}; {'id': '156', 'type': 'binary_operator', 'children': ['157', '158'], 'value': '+'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'start_pos'}; {'id': '158', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '159', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '163', 'type': 'conditional_expression', 'children': ['164', '165', '168'], 'value': 'if'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '165', 'type': 'comparison_operator', 'children': ['166', '167'], 'value': '!='}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '167', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '168', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'call', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '174', 'type': 'argument_list', 'children': ['175']}, {'id': '175', 'type': 'call', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '177', 'type': 'argument_list', 'children': ['178']}; {'id': '178', 'type': 'string', 'children': [], 'value': "f'{padding}x'"}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'call', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '187', 'type': 'argument_list', 'children': ['188', '189', '194']}; {'id': '188', 'type': 'string', 'children': [], 'value': "'>ii'"}, {'id': '189', 'type': 'attribute', 'children': ['190', '193']}; {'id': '190', 'type': 'subscript', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'operands'}; {'id': '192', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '194', 'type': 'call', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'subscript', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '199', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '200', 'type': 'for_statement', 'children': ['201', '202', '212']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'call', 'children': ['206', '211']}; {'id': '206', 'type': 'attribute', 'children': ['207', '210']}, {'id': '207', 'type': 'subscript', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '209', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '211', 'type': 'argument_list', 'children': []}; {'id': '212', 'type': 'block', 'children': ['213']}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'call', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '218', 'type': 'argument_list', 'children': ['219']}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '221', 'type': 'argument_list', 'children': ['222', '223', '224']}; {'id': '222', 'type': 'string', 'children': [], 'value': "'>ii'"}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '224', 'type': 'subscript', 'children': ['225', '228']}, {'id': '225', 'type': 'subscript', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '227', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '229', 'type': 'elif_clause', 'children': ['230', '233']}; {'id': '230', 'type': 'comparison_operator', 'children': ['231', '232'], 'value': '=='}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'opcode'}; {'id': '232', 'type': 'integer', 'children': [], 'value': '0xAA'}, {'id': '233', 'type': 'block', 'children': ['234', '245', '256', '265', '275']}; {'id': '234', 'type': 'expression_statement', 'children': ['235']}, {'id': '235', 'type': 'call', 'children': ['236', '239']}; {'id': '236', 'type': 'attribute', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'fout'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '239', 'type': 'argument_list', 'children': ['240']}; {'id': '240', 'type': 'call', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'pack'}; {'id': '242', 'type': 'argument_list', 'children': ['243', '244']}, {'id': '243', 'type': 'string', 'children': [], 'value': "'>B'"}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'opcode'}, {'id': '245', 'type': 'expression_statement', 'children': ['246']}; {'id': '246', 'type': 'assignment', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'padding'}; {'id': '248', 'type': 'binary_operator', 'children': ['249', '250'], 'value': '-'}, {'id': '249', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '250', 'type': 'binary_operator', 'children': ['251', '255'], 'value': '%'}, {'id': '251', 'type': 'parenthesized_expression', 'children': ['252'], 'value': '()'}; {'id': '252', 'type': 'binary_operator', 'children': ['253', '254'], 'value': '+'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'start_pos'}; {'id': '254', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '255', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '256', 'type': 'expression_statement', 'children': ['257']}, {'id': '257', 'type': 'assignment', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '259', 'type': 'conditional_expression', 'children': ['260', '261', '264'], 'value': 'if'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '261', 'type': 'comparison_operator', 'children': ['262', '263'], 'value': '!='}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '263', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '264', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '265', 'type': 'expression_statement', 'children': ['266']}; {'id': '266', 'type': 'call', 'children': ['267', '270']}, {'id': '267', 'type': 'attribute', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '270', 'type': 'argument_list', 'children': ['271']}, {'id': '271', 'type': 'call', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '273', 'type': 'argument_list', 'children': ['274']}; {'id': '274', 'type': 'string', 'children': [], 'value': "f'{padding}x'"}, {'id': '275', 'type': 'expression_statement', 'children': ['276']}; {'id': '276', 'type': 'call', 'children': ['277', '280']}, {'id': '277', 'type': 'attribute', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'fout'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '280', 'type': 'argument_list', 'children': ['281']}, {'id': '281', 'type': 'call', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'pack'}, {'id': '283', 'type': 'argument_list', 'children': ['284', '285', '290', '295', '300']}; {'id': '284', 'type': 'string', 'children': [], 'value': "f'>iii{len(operands) - 3}i'"}, {'id': '285', 'type': 'attribute', 'children': ['286', '289']}; {'id': '286', 'type': 'subscript', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'operands'}; {'id': '288', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '290', 'type': 'attribute', 'children': ['291', '294']}, {'id': '291', 'type': 'subscript', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '293', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '295', 'type': 'attribute', 'children': ['296', '299']}; {'id': '296', 'type': 'subscript', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'operands'}; {'id': '298', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '300', 'type': 'list_splat', 'children': ['301']}, {'id': '301', 'type': 'generator_expression', 'children': ['302', '305']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'o'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '305', 'type': 'for_in_clause', 'children': ['306', '307']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'o'}, {'id': '307', 'type': 'subscript', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '309', 'type': 'slice', 'children': ['310', '311']}; {'id': '310', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '311', 'type': 'colon', 'children': []}; {'id': '312', 'type': 'else_clause', 'children': ['313']}, {'id': '313', 'type': 'block', 'children': ['314']}; {'id': '314', 'type': 'expression_statement', 'children': ['315']}, {'id': '315', 'type': 'call', 'children': ['316', '319']}; {'id': '316', 'type': 'attribute', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'fout'}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '319', 'type': 'argument_list', 'children': ['320']}; {'id': '320', 'type': 'call', 'children': ['321', '322']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'pack'}; {'id': '322', 'type': 'argument_list', 'children': ['323', '324']}, {'id': '323', 'type': 'string', 'children': [], 'value': "'>B'"}

def write_instruction(fout, start_pos, ins): opcode, operands = ins.opcode, ins.operands fmt_operands = opcode_table[opcode]['operands'] if ins.wide: fout.write(pack('>B', 0xC4)) fout.write(pack('>B', opcode)) fout.write(pack('>H', operands[0].value)) if opcode == 0x84: fout.write(pack('>h', operands[1].value)) elif fmt_operands: fout.write(pack('>B', opcode)) for i, (fmt, _) in enumerate(fmt_operands): fout.write(fmt.value.pack(operands[i].value)) elif opcode == 0xAB: fout.write(pack('>B', opcode)) padding = 4 - (start_pos + 1) % 4 padding = padding if padding != 4 else 0 fout.write(pack(f'{padding}x')) fout.write(pack('>ii', operands[1].value, len(operands[0]))) for key in sorted(operands[0].keys()): fout.write(pack('>ii', key, operands[0][key])) elif opcode == 0xAA: fout.write(pack('>B', opcode)) padding = 4 - (start_pos + 1) % 4 padding = padding if padding != 4 else 0 fout.write(pack(f'{padding}x')) fout.write(pack( f'>iii{len(operands) - 3}i', operands[0].value, operands[1].value, operands[2].value, *(o.value for o in operands[3:]) )) else: fout.write(pack('>B', opcode))

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{'id': '16', 'type': 'if_statement', 'children': ['17', '19']}, {'id': '17', 'type': 'not_operator', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'return_statement', 'children': ['21']}, {'id': '21', 'type': 'None', 'children': []}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'ord'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'ins'}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'opcode_table'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'operands'}; {'id': '38', 'type': 'subscript', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'ins'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'operands'"}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ins'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'mnemonic'"}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'final_operands'}; {'id': '50', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '51', 'type': 'if_statement', 'children': ['52', '53', '89', '189', '316']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'for_statement', 'children': ['55', '58', '59']}, {'id': '55', 'type': 'pattern_list', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'fmt'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'type_'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'operands'}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'final_operands'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'Operand'}; {'id': '68', 'type': 'argument_list', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'type_'}; {'id': '70', 'type': 'subscript', 'children': ['71', '88']}, {'id': '71', 'type': 'call', 'children': ['72', '77']}; {'id': '72', 'type': 'attribute', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'fmt'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'unpack'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'fio'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'attribute', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '89', 'type': 'elif_clause', 'children': ['90', '93']}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '92'], 'value': '=='}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '0xAB'}, {'id': '93', 'type': 'block', 'children': ['94', '105', '114', '121', '136', '140', '169', '176']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '97', 'type': 'binary_operator', 'children': ['98', '99'], 'value': '-'}; {'id': '98', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '99', 'type': 'binary_operator', 'children': ['100', '104'], 'value': '%'}; {'id': '100', 'type': 'parenthesized_expression', 'children': ['101'], 'value': '()'}, {'id': '101', 'type': 'binary_operator', 'children': ['102', '103'], 'value': '+'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'start_pos'}, {'id': '103', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '104', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'padding'}; {'id': '108', 'type': 'conditional_expression', 'children': ['109', '110', '113'], 'value': 'if'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'padding'}; {'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': '!='}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'padding'}; {'id': '112', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '113', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'fio'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'assignment', 'children': ['123', '126']}, {'id': '123', 'type': 'pattern_list', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'npairs'}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'unpack'}; {'id': '128', 'type': 'argument_list', 'children': ['129', '130']}, {'id': '129', 'type': 'string', 'children': [], 'value': "'>ii'"}; {'id': '130', 'type': 'call', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'fio'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'integer', 'children': [], 'value': '8'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'assignment', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'pairs'}, {'id': '139', 'type': 'dictionary', 'children': []}; {'id': '140', 'type': 'for_statement', 'children': ['141', '142', '147']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '142', 'type': 'call', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'repeat'}; {'id': '144', 'type': 'argument_list', 'children': ['145', '146']}, {'id': '145', 'type': 'None', 'children': []}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'npairs'}, {'id': '147', 'type': 'block', 'children': ['148', '163']}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '153']}; {'id': '150', 'type': 'pattern_list', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '153', 'type': 'call', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'unpack'}, {'id': '155', 'type': 'argument_list', 'children': ['156', '157']}; {'id': '156', 'type': 'string', 'children': [], 'value': "'>ii'"}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'fio'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '161', 'type': 'argument_list', 'children': ['162']}; {'id': '162', 'type': 'integer', 'children': [], 'value': '8'}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'assignment', 'children': ['165', '168']}, {'id': '165', 'type': 'subscript', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'pairs'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'call', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '174', 'type': 'argument_list', 'children': ['175']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'pairs'}; {'id': '176', 'type': 'expression_statement', 'children': ['177']}, {'id': '177', 'type': 'call', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'final_operands'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '181', 'type': 'argument_list', 'children': ['182']}; {'id': '182', 'type': 'call', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'Operand'}; {'id': '184', 'type': 'argument_list', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'OperandTypes'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'BRANCH'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '189', 'type': 'elif_clause', 'children': ['190', '193']}; {'id': '190', 'type': 'comparison_operator', 'children': ['191', '192'], 'value': '=='}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '192', 'type': 'integer', 'children': [], 'value': '0xAA'}, {'id': '193', 'type': 'block', 'children': ['194', '205', '214', '221', '237', '250', '263', '276']}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'assignment', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '197', 'type': 'binary_operator', 'children': ['198', '199'], 'value': '-'}; {'id': '198', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '199', 'type': 'binary_operator', 'children': ['200', '204'], 'value': '%'}; {'id': '200', 'type': 'parenthesized_expression', 'children': ['201'], 'value': '()'}, {'id': '201', 'type': 'binary_operator', 'children': ['202', '203'], 'value': '+'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'start_pos'}, {'id': '203', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '204', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '205', 'type': 'expression_statement', 'children': ['206']}; {'id': '206', 'type': 'assignment', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'padding'}; {'id': '208', 'type': 'conditional_expression', 'children': ['209', '210', '213'], 'value': 'if'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'padding'}; {'id': '210', 'type': 'comparison_operator', 'children': ['211', '212'], 'value': '!='}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'padding'}; {'id': '212', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '213', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '214', 'type': 'expression_statement', 'children': ['215']}, {'id': '215', 'type': 'call', 'children': ['216', '219']}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'fio'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '219', 'type': 'argument_list', 'children': ['220']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'padding'}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'assignment', 'children': ['223', '227']}, {'id': '223', 'type': 'pattern_list', 'children': ['224', '225', '226']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'high'}, {'id': '227', 'type': 'call', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'unpack'}, {'id': '229', 'type': 'argument_list', 'children': ['230', '231']}; {'id': '230', 'type': 'string', 'children': [], 'value': "'>iii'"}, {'id': '231', 'type': 'call', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'fio'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '235', 'type': 'argument_list', 'children': ['236']}; {'id': '236', 'type': 'integer', 'children': [], 'value': '12'}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '242']}, {'id': '239', 'type': 'attribute', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '242', 'type': 'argument_list', 'children': ['243']}, {'id': '243', 'type': 'call', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'Operand'}, {'id': '245', 'type': 'argument_list', 'children': ['246', '249']}; {'id': '246', 'type': 'attribute', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'OperandTypes'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'BRANCH'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'call', 'children': ['252', '255']}; {'id': '252', 'type': 'attribute', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'final_operands'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '255', 'type': 'argument_list', 'children': ['256']}; {'id': '256', 'type': 'call', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'Operand'}; {'id': '258', 'type': 'argument_list', 'children': ['259', '262']}, {'id': '259', 'type': 'attribute', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'OperandTypes'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'LITERAL'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'low'}, {'id': '263', 'type': 'expression_statement', 'children': ['264']}; {'id': '264', 'type': 'call', 'children': ['265', '268']}, {'id': '265', 'type': 'attribute', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '268', 'type': 'argument_list', 'children': ['269']}, {'id': '269', 'type': 'call', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'Operand'}, {'id': '271', 'type': 'argument_list', 'children': ['272', '275']}; {'id': '272', 'type': 'attribute', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'OperandTypes'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'LITERAL'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '276', 'type': 'for_statement', 'children': ['277', '278', '287']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '278', 'type': 'call', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'repeat'}; {'id': '280', 'type': 'argument_list', 'children': ['281', '282']}, {'id': '281', 'type': 'None', 'children': []}; {'id': '282', 'type': 'binary_operator', 'children': ['283', '286'], 'value': '+'}, {'id': '283', 'type': 'binary_operator', 'children': ['284', '285'], 'value': '-'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'high'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '286', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '287', 'type': 'block', 'children': ['288', '303']}; {'id': '288', 'type': 'expression_statement', 'children': ['289']}, {'id': '289', 'type': 'assignment', 'children': ['290', '291']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '291', 'type': 'subscript', 'children': ['292', '302']}; {'id': '292', 'type': 'call', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'unpack'}; {'id': '294', 'type': 'argument_list', 'children': ['295', '296']}, {'id': '295', 'type': 'string', 'children': [], 'value': "'>i'"}; {'id': '296', 'type': 'call', 'children': ['297', '300']}, {'id': '297', 'type': 'attribute', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'fio'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '300', 'type': 'argument_list', 'children': ['301']}, {'id': '301', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '302', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '303', 'type': 'expression_statement', 'children': ['304']}; {'id': '304', 'type': 'call', 'children': ['305', '308']}, {'id': '305', 'type': 'attribute', 'children': ['306', '307']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '308', 'type': 'argument_list', 'children': ['309']}, {'id': '309', 'type': 'call', 'children': ['310', '311']}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'Operand'}, {'id': '311', 'type': 'argument_list', 'children': ['312', '315']}; {'id': '312', 'type': 'attribute', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'OperandTypes'}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'BRANCH'}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '316', 'type': 'elif_clause', 'children': ['317', '320']}, {'id': '317', 'type': 'comparison_operator', 'children': ['318', '319'], 'value': '=='}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '319', 'type': 'integer', 'children': [], 'value': '0xC4'}; {'id': '320', 'type': 'block', 'children': ['321', '336', '342', '348', '372']}, {'id': '321', 'type': 'expression_statement', 'children': ['322']}; {'id': '322', 'type': 'assignment', 'children': ['323', '324']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'real_op'}; {'id': '324', 'type': 'subscript', 'children': ['325', '335']}, {'id': '325', 'type': 'call', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'unpack'}, {'id': '327', 'type': 'argument_list', 'children': ['328', '329']}; {'id': '328', 'type': 'string', 'children': [], 'value': "'>B'"}, {'id': '329', 'type': 'call', 'children': ['330', '333']}; {'id': '330', 'type': 'attribute', 'children': ['331', '332']}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'fio'}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '333', 'type': 'argument_list', 'children': ['334']}; {'id': '334', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '335', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '336', 'type': 'expression_statement', 'children': ['337']}, {'id': '337', 'type': 'assignment', 'children': ['338', '339']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'ins'}, {'id': '339', 'type': 'subscript', 'children': ['340', '341']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'opcode_table'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'real_op'}; {'id': '342', 'type': 'expression_statement', 'children': ['343']}, {'id': '343', 'type': 'assignment', 'children': ['344', '345']}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '345', 'type': 'subscript', 'children': ['346', '347']}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'ins'}, {'id': '347', 'type': 'string', 'children': [], 'value': "'mnemonic'"}; {'id': '348', 'type': 'expression_statement', 'children': ['349']}, {'id': '349', 'type': 'call', 'children': ['350', '353']}; {'id': '350', 'type': 'attribute', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'final_operands'}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '353', 'type': 'argument_list', 'children': ['354']}; {'id': '354', 'type': 'call', 'children': ['355', '356']}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'Operand'}; {'id': '356', 'type': 'argument_list', 'children': ['357', '360']}, {'id': '357', 'type': 'attribute', 'children': ['358', '359']}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'OperandTypes'}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'LOCAL_INDEX'}; {'id': '360', 'type': 'subscript', 'children': ['361', '371']}, {'id': '361', 'type': 'call', 'children': ['362', '363']}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'unpack'}, {'id': '363', 'type': 'argument_list', 'children': ['364', '365']}; {'id': '364', 'type': 'string', 'children': [], 'value': "'>H'"}, {'id': '365', 'type': 'call', 'children': ['366', '369']}; {'id': '366', 'type': 'attribute', 'children': ['367', '368']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'fio'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '369', 'type': 'argument_list', 'children': ['370']}; {'id': '370', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '371', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '372', 'type': 'if_statement', 'children': ['373', '376']}, {'id': '373', 'type': 'comparison_operator', 'children': ['374', '375'], 'value': '=='}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'real_op'}, {'id': '375', 'type': 'integer', 'children': [], 'value': '0x84'}; {'id': '376', 'type': 'block', 'children': ['377']}, {'id': '377', 'type': 'expression_statement', 'children': ['378']}; {'id': '378', 'type': 'call', 'children': ['379', '382']}, {'id': '379', 'type': 'attribute', 'children': ['380', '381']}; {'id': '380', 'type': 'identifier', 'children': [], 'value': 'final_operands'}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '382', 'type': 'argument_list', 'children': ['383']}, {'id': '383', 'type': 'call', 'children': ['384', '385']}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'Operand'}, {'id': '385', 'type': 'argument_list', 'children': ['386', '389']}; {'id': '386', 'type': 'attribute', 'children': ['387', '388']}, {'id': '387', 'type': 'identifier', 'children': [], 'value': 'OperandTypes'}; {'id': '388', 'type': 'identifier', 'children': [], 'value': 'LITERAL'}, {'id': '389', 'type': 'subscript', 'children': ['390', '400']}; {'id': '390', 'type': 'call', 'children': ['391', '392']}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'unpack'}; {'id': '392', 'type': 'argument_list', 'children': ['393', '394']}, {'id': '393', 'type': 'string', 'children': [], 'value': "'>H'"}; {'id': '394', 'type': 'call', 'children': ['395', '398']}, {'id': '395', 'type': 'attribute', 'children': ['396', '397']}; {'id': '396', 'type': 'identifier', 'children': [], 'value': 'fio'}, {'id': '397', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '398', 'type': 'argument_list', 'children': ['399']}, {'id': '399', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '400', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '401', 'type': 'return_statement', 'children': ['402']}; {'id': '402', 'type': 'call', 'children': ['403', '404']}, {'id': '403', 'type': 'identifier', 'children': [], 'value': 'Instruction'}; {'id': '404', 'type': 'argument_list', 'children': ['405', '406', '407', '408']}, {'id': '405', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '406', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '407', 'type': 'identifier', 'children': [], 'value': 'final_operands'}

def read_instruction(fio, start_pos): op = fio.read(1) if not op: return None op = ord(op) ins = opcode_table[op] operands = ins['operands'] name = ins['mnemonic'] final_operands = [] if operands: for fmt, type_ in operands: final_operands.append( Operand( type_, fmt.value.unpack(fio.read(fmt.value.size))[0] ) ) elif op == 0xAB: padding = 4 - (start_pos + 1) % 4 padding = padding if padding != 4 else 0 fio.read(padding) default, npairs = unpack('>ii', fio.read(8)) pairs = {} for _ in repeat(None, npairs): match, offset = unpack('>ii', fio.read(8)) pairs[match] = offset final_operands.append(pairs) final_operands.append(Operand(OperandTypes.BRANCH, default)) elif op == 0xAA: padding = 4 - (start_pos + 1) % 4 padding = padding if padding != 4 else 0 fio.read(padding) default, low, high = unpack('>iii', fio.read(12)) final_operands.append(Operand(OperandTypes.BRANCH, default)) final_operands.append(Operand(OperandTypes.LITERAL, low)) final_operands.append(Operand(OperandTypes.LITERAL, high)) for _ in repeat(None, high - low + 1): offset = unpack('>i', fio.read(4))[0] final_operands.append(Operand(OperandTypes.BRANCH, offset)) elif op == 0xC4: real_op = unpack('>B', fio.read(1))[0] ins = opcode_table[real_op] name = ins['mnemonic'] final_operands.append(Operand( OperandTypes.LOCAL_INDEX, unpack('>H', fio.read(2))[0] )) if real_op == 0x84: final_operands.append(Operand( OperandTypes.LITERAL, unpack('>H', fio.read(2))[0] )) return Instruction(name, op, final_operands, start_pos)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_by_type'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'file_list'}, {'id': '5', 'type': 'block', 'children': ['6', '13', '45']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'ret_dict'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '13', 'type': 'for_statement', 'children': ['14', '15', '16']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'filepath'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'file_list'}; {'id': '16', 'type': 'block', 'children': ['17', '30']}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '22']}, {'id': '19', 'type': 'pattern_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '22', 'type': 'call', 'children': ['23', '28']}, {'id': '23', 'type': 'attribute', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'splitext'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'filepath'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '43']}; {'id': '32', 'type': 'attribute', 'children': ['33', '42']}, {'id': '33', 'type': 'subscript', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'ret_dict'}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'replace'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'.'"}, {'id': '41', 'type': 'string', 'children': [], 'value': "''"}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'filepath'}, {'id': '45', 'type': 'return_statement', 'children': ['46']}

def sort_by_type(file_list): ret_dict = defaultdict(list) for filepath in file_list: _, ext = os.path.splitext(filepath) ret_dict[ext.replace('.', '')].append(filepath) return ret_dict

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_check_triple'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'triple'}; {'id': '6', 'type': 'block', 'children': ['7', '14', '40', '44', '53', '62', '83', '95', '114', '146', '155', '169', '181', '188', '199', '211', '223', '235', '246', '253']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '13']}, {'id': '9', 'type': 'pattern_list', 'children': ['10', '11', '12']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'subj'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'triple'}; {'id': '14', 'type': 'if_statement', 'children': ['15', '21']}, {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_should_ignore_predicate'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'pred'}, {'id': '21', 'type': 'block', 'children': ['22', '39']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': '"Ignoring triple with predicate \'{}\'"'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': '_field_name_from_uri'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'pred'}, {'id': '39', 'type': 'return_statement', 'children': []}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'classes'}, {'id': '43', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'binary_operator', 'children': ['51', '52'], 'value': '%'}, {'id': '51', 'type': 'string', 'children': [], 'value': '"Possible member %s found"'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'pred'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': '_expand_qname'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '62', 'type': 'if_statement', 'children': ['63', '73']}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '70'], 'value': 'not'}; {'id': '64', 'type': 'call', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': '_namespace_from_uri'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'allowed_namespaces'}, {'id': '73', 'type': 'block', 'children': ['74', '82']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '79', 'type': 'argument_list', 'children': ['80', '81']}; {'id': '80', 'type': 'string', 'children': [], 'value': '"Member %s does not use an allowed namespace"'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '82', 'type': 'return_statement', 'children': []}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'instanceof'}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': '_is_instance'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'tuple', 'children': ['92', '93', '94']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'subj'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '95', 'type': 'if_statement', 'children': ['96', '104']}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '101'], 'value': '=='}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'instanceof'}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'rt'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'URIRef'}; {'id': '104', 'type': 'block', 'children': ['105']}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'instanceof'}; {'id': '108', 'type': 'call', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': '_expand_qname'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'instanceof'}; {'id': '114', 'type': 'if_statement', 'children': ['115', '130']}, {'id': '115', 'type': 'boolean_operator', 'children': ['116', '123', '124'], 'value': 'and'}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '118', 'type': 'argument_list', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'schema_def'}; {'id': '122', 'type': 'string', 'children': [], 'value': '"attributes_by_class"'}, {'id': '123', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '124', 'type': 'not_operator', 'children': ['125']}, {'id': '125', 'type': 'attribute', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'schema_def'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'attributes_by_class'}; {'id': '130', 'type': 'block', 'children': ['131', '138']}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'call', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'string', 'children': [], 'value': '"Parsed ontology not found. Parsing..."'}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '145']}; {'id': '140', 'type': 'attribute', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'schema_def'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'parse_ontology'}, {'id': '145', 'type': 'argument_list', 'children': []}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'class_invalid'}, {'id': '149', 'type': 'call', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': '_validate_class'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'instanceof'}, {'id': '155', 'type': 'if_statement', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'class_invalid'}, {'id': '157', 'type': 'block', 'children': ['158', '167']}; {'id': '158', 'type': 'expression_statement', 'children': ['159']}, {'id': '159', 'type': 'call', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '163', 'type': 'argument_list', 'children': ['164']}; {'id': '164', 'type': 'binary_operator', 'children': ['165', '166'], 'value': '%'}, {'id': '165', 'type': 'string', 'children': [], 'value': '"Invalid class %s"'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'instanceof'}, {'id': '167', 'type': 'return_statement', 'children': ['168']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'class_invalid'}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'assignment', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'classes'}; {'id': '172', 'type': 'call', 'children': ['173', '176']}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': '_superclasses_for_subject'}; {'id': '176', 'type': 'argument_list', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'instanceof'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'call', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'classes'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '186', 'type': 'argument_list', 'children': ['187']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'instanceof'}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'assignment', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'member_invalid'}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': '_validate_member'}, {'id': '195', 'type': 'argument_list', 'children': ['196', '197', '198']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'pred'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'classes'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'instanceof'}, {'id': '199', 'type': 'if_statement', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'member_invalid'}, {'id': '201', 'type': 'block', 'children': ['202', '209']}; {'id': '202', 'type': 'expression_statement', 'children': ['203']}, {'id': '203', 'type': 'call', 'children': ['204', '207']}; {'id': '204', 'type': 'attribute', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '207', 'type': 'argument_list', 'children': ['208']}; {'id': '208', 'type': 'string', 'children': [], 'value': '"Invalid member of class"'}, {'id': '209', 'type': 'return_statement', 'children': ['210']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'member_invalid'}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'dupe_invalid'}; {'id': '214', 'type': 'call', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': '_validate_duplication'}; {'id': '218', 'type': 'argument_list', 'children': ['219', '222']}, {'id': '219', 'type': 'tuple', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'subj'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'instanceof'}, {'id': '223', 'type': 'if_statement', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'dupe_invalid'}, {'id': '225', 'type': 'block', 'children': ['226', '233']}; {'id': '226', 'type': 'expression_statement', 'children': ['227']}, {'id': '227', 'type': 'call', 'children': ['228', '231']}; {'id': '228', 'type': 'attribute', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '231', 'type': 'argument_list', 'children': ['232']}; {'id': '232', 'type': 'string', 'children': [], 'value': '"Duplication found"'}, {'id': '233', 'type': 'return_statement', 'children': ['234']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'dupe_invalid'}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'call', 'children': ['237', '242']}, {'id': '237', 'type': 'attribute', 'children': ['238', '241']}; {'id': '238', 'type': 'attribute', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'checked_attributes'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '242', 'type': 'argument_list', 'children': ['243']}, {'id': '243', 'type': 'tuple', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'subj'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '246', 'type': 'expression_statement', 'children': ['247']}, {'id': '247', 'type': 'call', 'children': ['248', '251']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '251', 'type': 'argument_list', 'children': ['252']}; {'id': '252', 'type': 'string', 'children': [], 'value': '"successfully validated triple, no errors"'}, {'id': '253', 'type': 'return_statement', 'children': []}

def _check_triple(self, triple): subj, pred, obj = triple if self._should_ignore_predicate(pred): log.info("Ignoring triple with predicate '{}'" .format(self._field_name_from_uri(pred))) return classes = [] log.warning("Possible member %s found" % pred) pred = self._expand_qname(pred) if self._namespace_from_uri(pred) not in self.allowed_namespaces: log.info("Member %s does not use an allowed namespace", pred) return instanceof = self._is_instance((subj, pred, obj)) if type(instanceof) == rt.URIRef: instanceof = self._expand_qname(instanceof) if hasattr(self.schema_def, "attributes_by_class") and \ not self.schema_def.attributes_by_class: log.info("Parsed ontology not found. Parsing...") self.schema_def.parse_ontology() class_invalid = self._validate_class(instanceof) if class_invalid: log.warning("Invalid class %s" % instanceof) return class_invalid classes = self._superclasses_for_subject(self.graph, instanceof) classes.append(instanceof) member_invalid = self._validate_member(pred, classes, instanceof) if member_invalid: log.warning("Invalid member of class") return member_invalid dupe_invalid = self._validate_duplication((subj, pred), instanceof) if dupe_invalid: log.warning("Duplication found") return dupe_invalid self.checked_attributes.append((subj, pred)) log.warning("successfully validated triple, no errors") return

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_ontology'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '14', '27', '159', '172']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'clock'}, {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'binary_operator', 'children': ['21', '22'], 'value': '%'}, {'id': '21', 'type': 'string', 'children': [], 'value': '"Parsing ontology file for %s"'}; {'id': '22', 'type': 'attribute', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '__name__'}, {'id': '27', 'type': 'for_statement', 'children': ['28', '32', '37']}; {'id': '28', 'type': 'pattern_list', 'children': ['29', '30', '31']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'subj'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'pred'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': '_schema_nodes'}; {'id': '36', 'type': 'argument_list', 'children': []}, {'id': '37', 'type': 'block', 'children': ['38', '81', '89', '112']}; {'id': '38', 'type': 'if_statement', 'children': ['39', '44']}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'not'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'subj'}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'attributes_by_class'}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'if_statement', 'children': ['46', '72']}; {'id': '46', 'type': 'boolean_operator', 'children': ['47', '59', '60'], 'value': 'and'}, {'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': '=='}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'rt'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'URIRef'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'subscript', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'lexicon'}; {'id': '58', 'type': 'string', 'children': [], 'value': "'class'"}, {'id': '59', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '60', 'type': 'comparison_operator', 'children': ['61', '62'], 'value': '=='}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'rt'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'URIRef'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'subscript', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'lexicon'}, {'id': '71', 'type': 'string', 'children': [], 'value': "'type'"}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '80']}, {'id': '75', 'type': 'subscript', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'attributes_by_class'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'subj'}; {'id': '80', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'leaves'}; {'id': '84', 'type': 'list', 'children': ['85'], 'value': '[(subj, pred, obj)]'}, {'id': '85', 'type': 'tuple', 'children': ['86', '87', '88']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'subj'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '89', 'type': 'if_statement', 'children': ['90', '98']}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '95'], 'value': '=='}, {'id': '91', 'type': 'call', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'rt'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'BNode'}; {'id': '98', 'type': 'block', 'children': ['99']}, {'id': '99', 'type': 'expression_statement', 'children': ['100']}; {'id': '100', 'type': 'assignment', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'leaves'}; {'id': '102', 'type': 'call', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'deepest_node'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '109']}, {'id': '105', 'type': 'tuple', 'children': ['106', '107', '108']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'subj'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'pred'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '112', 'type': 'for_statement', 'children': ['113', '117', '118']}, {'id': '113', 'type': 'pattern_list', 'children': ['114', '115', '116']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'o'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'leaves'}; {'id': '118', 'type': 'block', 'children': ['119', '134']}, {'id': '119', 'type': 'if_statement', 'children': ['120', '125']}; {'id': '120', 'type': 'comparison_operator', 'children': ['121', '122'], 'value': 'not'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'o'}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'attributes_by_class'}, {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'assignment', 'children': ['128', '133']}; {'id': '128', 'type': 'subscript', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'attributes_by_class'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'o'}, {'id': '133', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '134', 'type': 'if_statement', 'children': ['135', '147']}, {'id': '135', 'type': 'comparison_operator', 'children': ['136', '137'], 'value': '=='}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'pred'}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'rt'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'URIRef'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'subscript', 'children': ['143', '146']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'lexicon'}; {'id': '146', 'type': 'string', 'children': [], 'value': "'domain'"}, {'id': '147', 'type': 'block', 'children': ['148']}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'call', 'children': ['150', '157']}; {'id': '150', 'type': 'attribute', 'children': ['151', '156']}, {'id': '151', 'type': 'subscript', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'attributes_by_class'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'o'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'subj'}, {'id': '159', 'type': 'if_statement', 'children': ['160', '164']}; {'id': '160', 'type': 'not_operator', 'children': ['161']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'attributes_by_class'}; {'id': '164', 'type': 'block', 'children': ['165']}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'string', 'children': [], 'value': '"No nodes found in ontology"'}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'call', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '177', 'type': 'argument_list', 'children': ['178']}; {'id': '178', 'type': 'call', 'children': ['179', '182']}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'string', 'children': [], 'value': '"Ontology parsing complete in {}"'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '182', 'type': 'argument_list', 'children': ['183']}, {'id': '183', 'type': 'binary_operator', 'children': ['184', '192'], 'value': '*'}; {'id': '184', 'type': 'parenthesized_expression', 'children': ['185'], 'value': '()'}, {'id': '185', 'type': 'binary_operator', 'children': ['186', '191'], 'value': '-'}; {'id': '186', 'type': 'call', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'clock'}; {'id': '190', 'type': 'argument_list', 'children': []}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'start'}

def parse_ontology(self): start = time.clock() log.info("Parsing ontology file for %s" % self.__class__.__name__) for subj, pred, obj in self._schema_nodes(): if subj not in self.attributes_by_class: if obj == rt.URIRef(self.lexicon['class']) and \ pred == rt.URIRef(self.lexicon['type']): self.attributes_by_class[subj] = [] leaves = [(subj, pred, obj)] if type(obj) == rt.BNode: leaves = deepest_node((subj, pred, obj), self.graph) for s, p, o in leaves: if o not in self.attributes_by_class: self.attributes_by_class[o] = [] if pred == rt.URIRef(self.lexicon['domain']): self.attributes_by_class[o].append(subj) if not self.attributes_by_class: log.info("No nodes found in ontology") log.info("Ontology parsing complete in {}".format( (time.clock() - start) * 1000))

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'new_frame_event'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '25', '29', '106', '195']}; {'id': '6', 'type': 'for_statement', 'children': ['7', '8', '15']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'out_pool'}; {'id': '8', 'type': 'call', 'children': ['9', '14']}, {'id': '9', 'type': 'attribute', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'outframe_pool'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '14', 'type': 'argument_list', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'if_statement', 'children': ['17', '23']}, {'id': '17', 'type': 'not_operator', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'out_pool'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'available'}; {'id': '22', 'type': 'argument_list', 'children': []}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'return_statement', 'children': []}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}; {'id': '28', 'type': 'dictionary', 'children': []}, {'id': '29', 'type': 'for_statement', 'children': ['30', '31', '38']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'in_buff'}, {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'input_buffer'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '37', 'type': 'argument_list', 'children': []}; {'id': '38', 'type': 'block', 'children': ['39', '48', '56', '65']}, {'id': '39', 'type': 'if_statement', 'children': ['40', '46']}; {'id': '40', 'type': 'not_operator', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'in_buff'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'available'}, {'id': '45', 'type': 'argument_list', 'children': []}; {'id': '46', 'type': 'block', 'children': ['47']}, {'id': '47', 'type': 'return_statement', 'children': []}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'in_frame'}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'in_buff'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'peek'}, {'id': '55', 'type': 'argument_list', 'children': []}; {'id': '56', 'type': 'if_statement', 'children': ['57', '60']}, {'id': '57', 'type': 'comparison_operator', 'children': ['58', '59'], 'value': 'is'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'in_frame'}, {'id': '59', 'type': 'None', 'children': []}; {'id': '60', 'type': 'block', 'children': ['61']}, {'id': '61', 'type': 'raise_statement', 'children': ['62']}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'StopIteration'}; {'id': '64', 'type': 'argument_list', 'children': []}, {'id': '65', 'type': 'if_statement', 'children': ['66', '71', '80']}; {'id': '66', 'type': 'comparison_operator', 'children': ['67', '70'], 'value': '>='}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'in_frame'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'frame_no'}; {'id': '70', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '71', 'type': 'block', 'children': ['72']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '77']}; {'id': '74', 'type': 'subscript', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'in_buff'}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'in_frame'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'frame_no'}; {'id': '80', 'type': 'else_clause', 'children': ['81']}, {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'while_statement', 'children': ['83', '99']}, {'id': '83', 'type': 'boolean_operator', 'children': ['84', '91'], 'value': 'and'}; {'id': '84', 'type': 'comparison_operator', 'children': ['85', '90'], 'value': '>'}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'in_buff'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'available'}, {'id': '89', 'type': 'argument_list', 'children': []}; {'id': '90', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '91', 'type': 'comparison_operator', 'children': ['92', '98'], 'value': 'is'}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'in_buff'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'peek'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '98', 'type': 'None', 'children': []}, {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'in_buff'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '105', 'type': 'argument_list', 'children': []}; {'id': '106', 'type': 'if_statement', 'children': ['107', '113']}, {'id': '107', 'type': 'comparison_operator', 'children': ['108', '112'], 'value': '>'}; {'id': '108', 'type': 'call', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}; {'id': '112', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '113', 'type': 'block', 'children': ['114', '125', '175']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'frame_no'}, {'id': '117', 'type': 'call', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '124', 'type': 'argument_list', 'children': []}, {'id': '125', 'type': 'for_statement', 'children': ['126', '127', '128']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'in_buff'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}; {'id': '128', 'type': 'block', 'children': ['129']}, {'id': '129', 'type': 'while_statement', 'children': ['130', '143']}; {'id': '130', 'type': 'boolean_operator', 'children': ['131', '136'], 'value': 'and'}, {'id': '131', 'type': 'comparison_operator', 'children': ['132', '135'], 'value': '<'}; {'id': '132', 'type': 'subscript', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'in_buff'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'frame_no'}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '142'], 'value': '>'}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'in_buff'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'available'}, {'id': '141', 'type': 'argument_list', 'children': []}; {'id': '142', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '143', 'type': 'block', 'children': ['144', '150', '158', '167']}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'in_buff'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '149', 'type': 'argument_list', 'children': []}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'assignment', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'in_frame'}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'in_buff'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'peek'}, {'id': '157', 'type': 'argument_list', 'children': []}; {'id': '158', 'type': 'if_statement', 'children': ['159', '162']}, {'id': '159', 'type': 'comparison_operator', 'children': ['160', '161'], 'value': 'is'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'in_frame'}, {'id': '161', 'type': 'None', 'children': []}; {'id': '162', 'type': 'block', 'children': ['163']}, {'id': '163', 'type': 'raise_statement', 'children': ['164']}; {'id': '164', 'type': 'call', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'StopIteration'}; {'id': '166', 'type': 'argument_list', 'children': []}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'assignment', 'children': ['169', '172']}, {'id': '169', 'type': 'subscript', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'in_buff'}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'in_frame'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'frame_no'}, {'id': '175', 'type': 'if_statement', 'children': ['176', '193']}; {'id': '176', 'type': 'comparison_operator', 'children': ['177', '185'], 'value': '!='}, {'id': '177', 'type': 'call', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '184', 'type': 'argument_list', 'children': []}, {'id': '185', 'type': 'call', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'call', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'frame_nos'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '192', 'type': 'argument_list', 'children': []}, {'id': '193', 'type': 'block', 'children': ['194']}; {'id': '194', 'type': 'return_statement', 'children': []}, {'id': '195', 'type': 'try_statement', 'children': ['196', '203', '207']}; {'id': '196', 'type': 'block', 'children': ['197']}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'process_frame'}; {'id': '202', 'type': 'argument_list', 'children': []}, {'id': '203', 'type': 'except_clause', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'StopIteration'}, {'id': '205', 'type': 'block', 'children': ['206']}; {'id': '206', 'type': 'raise_statement', 'children': []}, {'id': '207', 'type': 'except_clause', 'children': ['208', '212']}; {'id': '208', 'type': 'as_pattern', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '210', 'type': 'as_pattern_target', 'children': ['211']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'ex'}; {'id': '212', 'type': 'block', 'children': ['213', '222']}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'call', 'children': ['215', '220']}, {'id': '215', 'type': 'attribute', 'children': ['216', '219']}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'exception'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'ex'}; {'id': '222', 'type': 'raise_statement', 'children': ['223']}, {'id': '223', 'type': 'call', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'StopIteration'}, {'id': '225', 'type': 'argument_list', 'children': []}

def new_frame_event(self): for out_pool in self.outframe_pool.values(): if not out_pool.available(): return frame_nos = {} for in_buff in self.input_buffer.values(): if not in_buff.available(): return in_frame = in_buff.peek() if in_frame is None: raise StopIteration() if in_frame.frame_no >= 0: frame_nos[in_buff] = in_frame.frame_no else: while in_buff.available() > 1 and in_buff.peek(1) is not None: in_buff.get() if len(frame_nos) > 1: frame_no = max(frame_nos.values()) for in_buff in frame_nos: while frame_nos[in_buff] < frame_no and in_buff.available() > 1: in_buff.get() in_frame = in_buff.peek() if in_frame is None: raise StopIteration() frame_nos[in_buff] = in_frame.frame_no if min(frame_nos.values()) != max(frame_nos.values()): return try: self.process_frame() except StopIteration: raise except Exception as ex: self.logger.exception(ex) raise StopIteration()

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'GaussianFilterCore'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'x_sigma'}; {'id': '6', 'type': 'float', 'children': [], 'value': '0.0'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'y_sigma'}, {'id': '9', 'type': 'float', 'children': [], 'value': '0.0'}; {'id': '10', 'type': 'block', 'children': ['11', '137', '145', '153', '160', '167', '192', '228', '234', '240', '246', '257', '261', '273', '285', '295']}, {'id': '11', 'type': 'function_definition', 'children': ['12', '13', '15']}; {'id': '12', 'type': 'function_name', 'children': [], 'value': 'filter_1D'}, {'id': '13', 'type': 'parameters', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'sigma'}, {'id': '15', 'type': 'block', 'children': ['16', '32', '36', '40', '74', '83', '102', '127', '135']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '19', 'type': 'binary_operator', 'children': ['20', '21'], 'value': '/'}; {'id': '20', 'type': 'float', 'children': [], 'value': '1.0'}, {'id': '21', 'type': 'parenthesized_expression', 'children': ['22'], 'value': '()'}; {'id': '22', 'type': 'binary_operator', 'children': ['23', '24'], 'value': '*'}, {'id': '23', 'type': 'float', 'children': [], 'value': '2.0'}; {'id': '24', 'type': 'parenthesized_expression', 'children': ['25'], 'value': '()'}, {'id': '25', 'type': 'binary_operator', 'children': ['26', '31'], 'value': '**'}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'sigma'}; {'id': '30', 'type': 'float', 'children': [], 'value': '0.0001'}, {'id': '31', 'type': 'float', 'children': [], 'value': '2.0'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'coefs'}, {'id': '35', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'coef'}, {'id': '39', 'type': 'float', 'children': [], 'value': '1.0'}; {'id': '40', 'type': 'while_statement', 'children': ['41', '44']}, {'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': '>'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'coef'}, {'id': '43', 'type': 'float', 'children': [], 'value': '0.0001'}; {'id': '44', 'type': 'block', 'children': ['45', '52']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'coefs'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'coef'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'coef'}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'math'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'exp'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'unary_operator', 'children': ['61'], 'value': '-'}, {'id': '61', 'type': 'parenthesized_expression', 'children': ['62'], 'value': '()'}; {'id': '62', 'type': 'binary_operator', 'children': ['63', '64'], 'value': '*'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'alpha'}; {'id': '64', 'type': 'parenthesized_expression', 'children': ['65'], 'value': '()'}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'binary_operator', 'children': ['69', '73'], 'value': '**'}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'coefs'}, {'id': '73', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'fil_dim'}, {'id': '77', 'type': 'binary_operator', 'children': ['78', '82'], 'value': '-'}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'coefs'}; {'id': '82', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'zeros'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '97']}, {'id': '91', 'type': 'binary_operator', 'children': ['92', '93'], 'value': '+'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '93', 'type': 'parenthesized_expression', 'children': ['94'], 'value': '()'}; {'id': '94', 'type': 'binary_operator', 'children': ['95', '96'], 'value': '*'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'fil_dim'}; {'id': '96', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '97', 'type': 'keyword_argument', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'float32'}; {'id': '102', 'type': 'for_statement', 'children': ['103', '106', '110']}, {'id': '103', 'type': 'pattern_list', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'coef'}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'coefs'}; {'id': '110', 'type': 'block', 'children': ['111', '119']}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '118']}, {'id': '113', 'type': 'subscript', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '115', 'type': 'binary_operator', 'children': ['116', '117'], 'value': '-'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'fil_dim'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'coef'}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '126']}, {'id': '121', 'type': 'subscript', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '123', 'type': 'binary_operator', 'children': ['124', '125'], 'value': '+'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'fil_dim'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'coef'}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'augmented_assignment', 'children': ['129', '130'], 'value': '/='}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '130', 'type': 'call', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '134', 'type': 'argument_list', 'children': []}, {'id': '135', 'type': 'return_statement', 'children': ['136']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'assignment', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'x_sigma'}; {'id': '140', 'type': 'call', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '142', 'type': 'argument_list', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'x_sigma'}; {'id': '144', 'type': 'float', 'children': [], 'value': '0.0'}, {'id': '145', 'type': 'expression_statement', 'children': ['146']}; {'id': '146', 'type': 'assignment', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'y_sigma'}; {'id': '148', 'type': 'call', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '150', 'type': 'argument_list', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'y_sigma'}; {'id': '152', 'type': 'float', 'children': [], 'value': '0.0'}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'x_fil'}; {'id': '156', 'type': 'call', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'filter_1D'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'x_sigma'}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'y_fil'}, {'id': '163', 'type': 'call', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'filter_1D'}, {'id': '165', 'type': 'argument_list', 'children': ['166']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'y_sigma'}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'assignment', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '170', 'type': 'call', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'empty'}; {'id': '174', 'type': 'argument_list', 'children': ['175', '187']}, {'id': '175', 'type': 'list', 'children': ['176', '181', '186'], 'value': '[y_fil.shape[0], x_fil.shape[0], 1]'}; {'id': '176', 'type': 'subscript', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'y_fil'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '180', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '181', 'type': 'subscript', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'x_fil'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '185', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '186', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '187', 'type': 'keyword_argument', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'float32'}; {'id': '192', 'type': 'for_statement', 'children': ['193', '194', '202']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '194', 'type': 'call', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'subscript', 'children': ['198', '201']}; {'id': '198', 'type': 'attribute', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'y_fil'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '201', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '202', 'type': 'block', 'children': ['203']}, {'id': '203', 'type': 'for_statement', 'children': ['204', '205', '213']}; 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{'id': '236', 'type': 'attribute', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'out_frame'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'assignment', 'children': ['242', '245']}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'out_frame'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '245', 'type': 'string', 'children': [], 'value': "'fil'"}; {'id': '246', 'type': 'expression_statement', 'children': ['247']}, {'id': '247', 'type': 'assignment', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'audit'}, {'id': '249', 'type': 'call', 'children': ['250', '255']}; {'id': '250', 'type': 'attribute', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'out_frame'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '255', 'type': 'argument_list', 'children': ['256']}; {'id': '256', 'type': 'string', 'children': [], 'value': "'audit'"}, {'id': '257', 'type': 'expression_statement', 'children': ['258']}; {'id': '258', 'type': 'augmented_assignment', 'children': ['259', '260'], 'value': '+='}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'audit'}; {'id': '260', 'type': 'string', 'children': [], 'value': "'data = GaussianFilter()\\n'"}, {'id': '261', 'type': 'if_statement', 'children': ['262', '265']}; {'id': '262', 'type': 'comparison_operator', 'children': ['263', '264'], 'value': '!='}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'x_sigma'}; {'id': '264', 'type': 'float', 'children': [], 'value': '0.0'}, {'id': '265', 'type': 'block', 'children': ['266']}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'augmented_assignment', 'children': ['268', '269'], 'value': '+='}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'audit'}, {'id': '269', 'type': 'binary_operator', 'children': ['270', '271'], 'value': '%'}; {'id': '270', 'type': 'string', 'children': [], 'value': "' x_sigma: %g\\n'"}, {'id': '271', 'type': 'parenthesized_expression', 'children': ['272'], 'value': '()'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'x_sigma'}, {'id': '273', 'type': 'if_statement', 'children': ['274', '277']}; {'id': '274', 'type': 'comparison_operator', 'children': ['275', '276'], 'value': '!='}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'y_sigma'}; {'id': '276', 'type': 'float', 'children': [], 'value': '0.0'}, {'id': '277', 'type': 'block', 'children': ['278']}; {'id': '278', 'type': 'expression_statement', 'children': ['279']}, {'id': '279', 'type': 'augmented_assignment', 'children': ['280', '281'], 'value': '+='}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'audit'}, {'id': '281', 'type': 'binary_operator', 'children': ['282', '283'], 'value': '%'}; {'id': '282', 'type': 'string', 'children': [], 'value': "' y_sigma: %g\\n'"}, {'id': '283', 'type': 'parenthesized_expression', 'children': ['284'], 'value': '()'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'y_sigma'}, {'id': '285', 'type': 'expression_statement', 'children': ['286']}; {'id': '286', 'type': 'call', 'children': ['287', '292']}, {'id': '287', 'type': 'attribute', 'children': ['288', '291']}; {'id': '288', 'type': 'attribute', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'out_frame'}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'metadata'}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '292', 'type': 'argument_list', 'children': ['293', '294']}, {'id': '293', 'type': 'string', 'children': [], 'value': "'audit'"}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'audit'}, {'id': '295', 'type': 'return_statement', 'children': ['296']}

def GaussianFilterCore(x_sigma=0.0, y_sigma=0.0): def filter_1D(sigma): alpha = 1.0 / (2.0 * (max(sigma, 0.0001) ** 2.0)) coefs = [] coef = 1.0 while coef > 0.0001: coefs.append(coef) coef = math.exp(-(alpha * (float(len(coefs) ** 2)))) fil_dim = len(coefs) - 1 result = numpy.zeros(1 + (fil_dim * 2), dtype=numpy.float32) for n, coef in enumerate(coefs): result[fil_dim - n] = coef result[fil_dim + n] = coef result /= result.sum() return result x_sigma = max(x_sigma, 0.0) y_sigma = max(y_sigma, 0.0) x_fil = filter_1D(x_sigma) y_fil = filter_1D(y_sigma) result = numpy.empty( [y_fil.shape[0], x_fil.shape[0], 1], dtype=numpy.float32) for y in range(y_fil.shape[0]): for x in range(x_fil.shape[0]): result[y, x, 0] = x_fil[x] * y_fil[y] out_frame = Frame() out_frame.data = result out_frame.type = 'fil' audit = out_frame.metadata.get('audit') audit += 'data = GaussianFilter()\n' if x_sigma != 0.0: audit += ' x_sigma: %g\n' % (x_sigma) if y_sigma != 0.0: audit += ' y_sigma: %g\n' % (y_sigma) out_frame.metadata.set('audit', audit) return out_frame

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{'id': '162', 'type': 'identifier', 'children': [], 'value': 'optional'}, {'id': '163', 'type': 'subscript', 'children': ['164', '176']}; {'id': '164', 'type': 'list_comprehension', 'children': ['165', '166', '169']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '166', 'type': 'for_in_clause', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '169', 'type': 'if_clause', 'children': ['170']}; {'id': '170', 'type': 'comparison_operator', 'children': ['171', '175'], 'value': 'is'}, {'id': '171', 'type': 'call', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '173', 'type': 'argument_list', 'children': ['174']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'Optional'}; {'id': '176', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'call', 'children': ['179', '182']}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '182', 'type': 'argument_list', 'children': ['183']}, {'id': '183', 'type': 'call', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'optional'}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'call', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'groups'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'binary_operator', 'children': ['196', '202'], 'value': '+'}; {'id': '196', 'type': 'call', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '198', 'type': 'argument_list', 'children': ['199']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'optional'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '203', 'type': 'elif_clause', 'children': ['204', '207']}; {'id': '204', 'type': 'comparison_operator', 'children': ['205', '206'], 'value': 'in'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'OneOrMore'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'types'}, {'id': '207', 'type': 'block', 'children': ['208', '225', '237']}; {'id': '208', 'type': 'expression_statement', 'children': ['209']}, {'id': '209', 'type': 'assignment', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'oneormore'}, {'id': '211', 'type': 'subscript', 'children': ['212', '224']}; {'id': '212', 'type': 'list_comprehension', 'children': ['213', '214', '217']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '214', 'type': 'for_in_clause', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '217', 'type': 'if_clause', 'children': ['218']}; {'id': '218', 'type': 'comparison_operator', 'children': ['219', '223'], 'value': 'is'}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '221', 'type': 'argument_list', 'children': ['222']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'OneOrMore'}; {'id': '224', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'call', 'children': ['227', '230']}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '230', 'type': 'argument_list', 'children': ['231']}, {'id': '231', 'type': 'call', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '235', 'type': 'argument_list', 'children': ['236']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'oneormore'}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '242']}, {'id': '239', 'type': 'attribute', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'groups'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '242', 'type': 'argument_list', 'children': ['243']}, {'id': '243', 'type': 'binary_operator', 'children': ['244', '252'], 'value': '+'}; {'id': '244', 'type': 'binary_operator', 'children': ['245', '251'], 'value': '*'}, {'id': '245', 'type': 'call', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '247', 'type': 'argument_list', 'children': ['248']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'oneormore'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '251', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '253', 'type': 'else_clause', 'children': ['254']}; {'id': '254', 'type': 'block', 'children': ['255']}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'call', 'children': ['257', '260']}, {'id': '257', 'type': 'attribute', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'ret'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '260', 'type': 'argument_list', 'children': ['261']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '262', 'type': 'return_statement', 'children': ['263']}, {'id': '263', 'type': 'call', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'Either'}, {'id': '265', 'type': 'argument_list', 'children': ['266']}; {'id': '266', 'type': 'list_splat', 'children': ['267']}, {'id': '267', 'type': 'list_comprehension', 'children': ['268', '273']}; {'id': '268', 'type': 'call', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'Required'}; {'id': '270', 'type': 'argument_list', 'children': ['271']}, {'id': '271', 'type': 'list_splat', 'children': ['272']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '273', 'type': 'for_in_clause', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'ret'}

def either(self): if not hasattr(self, 'children'): return Either(Required(self)) else: ret = [] groups = [[self]] while groups: children = groups.pop(0) types = [type(c) for c in children] if Either in types: either = [c for c in children if type(c) is Either][0] children.pop(children.index(either)) for c in either.children: groups.append([c] + children) elif Required in types: required = [c for c in children if type(c) is Required][0] children.pop(children.index(required)) groups.append(list(required.children) + children) elif Optional in types: optional = [c for c in children if type(c) is Optional][0] children.pop(children.index(optional)) groups.append(list(optional.children) + children) elif OneOrMore in types: oneormore = [c for c in children if type(c) is OneOrMore][0] children.pop(children.index(oneormore)) groups.append(list(oneormore.children) * 2 + children) else: ret.append(children) return Either(*[Required(*e) for e in ret])

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'TranslateManagedObject'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'mObj'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'xlateOrg'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'xlateMap'}, {'id': '7', 'type': 'block', 'children': ['8', '15', '20', '28', '39', '198', '352']}; {'id': '8', 'type': 'import_from_statement', 'children': ['9', '11', '13']}, {'id': '9', 'type': 'dotted_name', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'UcsBase'}, {'id': '11', 'type': 'dotted_name', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}, {'id': '13', 'type': 'dotted_name', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'WriteUcsWarning'}, {'id': '15', 'type': 'import_from_statement', 'children': ['16', '18']}; {'id': '16', 'type': 'dotted_name', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'Mos'}; {'id': '18', 'type': 'dotted_name', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'OrgOrg'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'mObj'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'Clone'}, {'id': '27', 'type': 'argument_list', 'children': []}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'xMO'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'SetHandle'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'mObj'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'GetHandle'}; {'id': '38', 'type': 'argument_list', 'children': []}, {'id': '39', 'type': 'if_statement', 'children': ['40', '44']}; {'id': '40', 'type': 'parenthesized_expression', 'children': ['41'], 'value': '()'}, {'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': '!='}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'xlateOrg'}, {'id': '43', 'type': 'None', 'children': []}; {'id': '44', 'type': 'block', 'children': ['45', '57']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'matchObj'}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '54']}, {'id': '53', 'type': 'string', 'children': [], 'value': "r'^(org-[\\-\\.:_a-zA-Z0-9]{1,16}/)*org-[\\-\\.:_a-zA-Z0-9]{1,16}'"}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'xMO'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'Dn'}, {'id': '57', 'type': 'if_statement', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'matchObj'}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'if_statement', 'children': ['61', '75', '166']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '70'], 'value': '=='}; {'id': '62', 'type': 'call', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'WordL'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'classId'}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'OrgOrg'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'ClassId'}; {'id': '74', 'type': 'argument_list', 'children': []}, {'id': '75', 'type': 'block', 'children': ['76', '95', '112', '124']}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'orgMoMeta'}, {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'GetUcsPropertyMeta'}, {'id': '83', 'type': 'argument_list', 'children': ['84', '94']}; {'id': '84', 'type': 'call', 'children': ['85', '88']}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'WordU'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'OrgOrg'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'ClassId'}, {'id': '93', 'type': 'argument_list', 'children': []}; {'id': '94', 'type': 'string', 'children': [], 'value': '"Meta"'}, {'id': '95', 'type': 'if_statement', 'children': ['96', '99']}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '98'], 'value': '=='}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'orgMoMeta'}; {'id': '98', 'type': 'None', 'children': []}, {'id': '99', 'type': 'block', 'children': ['100', '110']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'WriteUcsWarning'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'binary_operator', 'children': ['105', '106'], 'value': '%'}, {'id': '105', 'type': 'string', 'children': [], 'value': "'[Warning]: Could not translate [%s]'"}; {'id': '106', 'type': 'parenthesized_expression', 'children': ['107'], 'value': '()'}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'Dn'}; {'id': '110', 'type': 'return_statement', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'xMO'}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'matchObj1'}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'findall'}, {'id': '119', 'type': 'argument_list', 'children': ['120', '121']}; {'id': '120', 'type': 'string', 'children': [], 'value': "r'(\\[[^\\]]+\\])'"}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'orgMoMeta'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'rn'}; {'id': '124', 'type': 'if_statement', 'children': ['125', '126', '134']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'matchObj1'}; {'id': '126', 'type': 'block', 'children': ['127']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'UpdateMoDnAlongWithNamingProperties'}; {'id': '130', 'type': 'argument_list', 'children': ['131', '132', '133']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'xMO'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'orgMoMeta'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'xlateOrg'}; {'id': '134', 'type': 'else_clause', 'children': ['135']}, {'id': '135', 'type': 'block', 'children': ['136', '160']}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'assignment', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'newDn'}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'sub'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '153', '157']}; {'id': '144', 'type': 'binary_operator', 'children': ['145', '146'], 'value': '%'}, {'id': '145', 'type': 'string', 'children': [], 'value': '"%s"'}; {'id': '146', 'type': 'parenthesized_expression', 'children': ['147'], 'value': '()'}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'matchObj'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '153', 'type': 'binary_operator', 'children': ['154', '155'], 'value': '%'}; {'id': '154', 'type': 'string', 'children': [], 'value': '"%s"'}, {'id': '155', 'type': 'parenthesized_expression', 'children': ['156'], 'value': '()'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'xlateOrg'}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'Dn'}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'xMO'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'Dn'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'newDn'}; {'id': '166', 'type': 'else_clause', 'children': ['167']}, {'id': '167', 'type': 'block', 'children': ['168', '192']}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'assignment', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'newDn'}, {'id': '171', 'type': 'call', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'sub'}, {'id': '175', 'type': 'argument_list', 'children': ['176', '185', '189']}; {'id': '176', 'type': 'binary_operator', 'children': ['177', '178'], 'value': '%'}, {'id': '177', 'type': 'string', 'children': [], 'value': '"^%s/"'}; {'id': '178', 'type': 'parenthesized_expression', 'children': ['179'], 'value': '()'}, {'id': '179', 'type': 'call', 'children': ['180', '183']}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'matchObj'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '183', 'type': 'argument_list', 'children': ['184']}; {'id': '184', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '185', 'type': 'binary_operator', 'children': ['186', '187'], 'value': '%'}; {'id': '186', 'type': 'string', 'children': [], 'value': '"%s/"'}, {'id': '187', 'type': 'parenthesized_expression', 'children': ['188'], 'value': '()'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'xlateOrg'}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'Dn'}; {'id': '192', 'type': 'expression_statement', 'children': ['193']}, {'id': '193', 'type': 'assignment', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'xMO'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'Dn'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'newDn'}; {'id': '198', 'type': 'if_statement', 'children': ['199', '203']}, {'id': '199', 'type': 'parenthesized_expression', 'children': ['200'], 'value': '()'}; {'id': '200', 'type': 'comparison_operator', 'children': ['201', '202'], 'value': '!='}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'xlateMap'}; {'id': '202', 'type': 'None', 'children': []}, {'id': '203', 'type': 'block', 'children': ['204', '210']}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'assignment', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'originalDn'}, {'id': '207', 'type': 'attribute', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'Dn'}; {'id': '210', 'type': 'if_statement', 'children': ['211', '214', '281']}, {'id': '211', 'type': 'comparison_operator', 'children': ['212', '213'], 'value': 'in'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'originalDn'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'xlateMap'}; {'id': '214', 'type': 'block', 'children': ['215', '232', '247', '259']}, {'id': '215', 'type': 'expression_statement', 'children': ['216']}; {'id': '216', 'type': 'assignment', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'xMoMeta'}; {'id': '218', 'type': 'call', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'GetUcsPropertyMeta'}; {'id': '222', 'type': 'argument_list', 'children': ['223', '231']}, {'id': '223', 'type': 'call', 'children': ['224', '227']}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'WordU'}, {'id': '227', 'type': 'argument_list', 'children': ['228']}; {'id': '228', 'type': 'attribute', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'xMO'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'classId'}, {'id': '231', 'type': 'string', 'children': [], 'value': '"Meta"'}; {'id': '232', 'type': 'if_statement', 'children': ['233', '236']}, {'id': '233', 'type': 'comparison_operator', 'children': ['234', '235'], 'value': '=='}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'xMoMeta'}, {'id': '235', 'type': 'None', 'children': []}; {'id': '236', 'type': 'block', 'children': ['237', '245']}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'WriteUcsWarning'}; {'id': '240', 'type': 'argument_list', 'children': ['241']}, {'id': '241', 'type': 'binary_operator', 'children': ['242', '243'], 'value': '%'}; {'id': '242', 'type': 'string', 'children': [], 'value': "'[Warning]: Could not translate [%s]'"}, {'id': '243', 'type': 'parenthesized_expression', 'children': ['244'], 'value': '()'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'originalDn'}, {'id': '245', 'type': 'return_statement', 'children': ['246']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '247', 'type': 'expression_statement', 'children': ['248']}; {'id': '248', 'type': 'assignment', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'matchObj'}; {'id': '250', 'type': 'call', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'findall'}; {'id': '254', 'type': 'argument_list', 'children': ['255', '256']}, {'id': '255', 'type': 'string', 'children': [], 'value': "r'(\\[[^\\]]+\\])'"}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'xMoMeta'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'rn'}, {'id': '259', 'type': 'if_statement', 'children': ['260', '261', '271']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'matchObj'}, {'id': '261', 'type': 'block', 'children': ['262']}; {'id': '262', 'type': 'expression_statement', 'children': ['263']}, {'id': '263', 'type': 'call', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'UpdateMoDnAlongWithNamingProperties'}, {'id': '265', 'type': 'argument_list', 'children': ['266', '267', '268']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'xMoMeta'}; {'id': '268', 'type': 'subscript', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'xlateMap'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'originalDn'}, {'id': '271', 'type': 'else_clause', 'children': ['272']}; {'id': '272', 'type': 'block', 'children': ['273']}, {'id': '273', 'type': 'expression_statement', 'children': ['274']}; {'id': '274', 'type': 'assignment', 'children': ['275', '278']}, {'id': '275', 'type': 'attribute', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'Dn'}; {'id': '278', 'type': 'subscript', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'xlateMap'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'originalDn'}, {'id': '281', 'type': 'else_clause', 'children': ['282']}; {'id': '282', 'type': 'block', 'children': ['283', '294']}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'assignment', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'originalDn'}; {'id': '286', 'type': 'call', 'children': ['287', '290']}, {'id': '287', 'type': 'attribute', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'sub'}; {'id': '290', 'type': 'argument_list', 'children': ['291', '292', '293']}, {'id': '291', 'type': 'string', 'children': [], 'value': "r'[/]*[^/]+$'"}; {'id': '292', 'type': 'string', 'children': [], 'value': "''"}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'originalDn'}; {'id': '294', 'type': 'while_statement', 'children': ['295', '303']}, {'id': '295', 'type': 'parenthesized_expression', 'children': ['296'], 'value': '()'}; {'id': '296', 'type': 'boolean_operator', 'children': ['297', '300'], 'value': 'or'}, {'id': '297', 'type': 'comparison_operator', 'children': ['298', '299'], 'value': '!='}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'originalDn'}, {'id': '299', 'type': 'None', 'children': []}; {'id': '300', 'type': 'comparison_operator', 'children': ['301', '302'], 'value': '=='}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'originalDn'}; {'id': '302', 'type': 'string', 'children': [], 'value': '""'}, {'id': '303', 'type': 'block', 'children': ['304', '324', '345', '351']}; {'id': '304', 'type': 'if_statement', 'children': ['305', '311']}, {'id': '305', 'type': 'parenthesized_expression', 'children': ['306'], 'value': '()'}; {'id': '306', 'type': 'not_operator', 'children': ['307']}, {'id': '307', 'type': 'parenthesized_expression', 'children': ['308'], 'value': '()'}; {'id': '308', 'type': 'comparison_operator', 'children': ['309', '310'], 'value': 'in'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'originalDn'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'xlateMap'}, {'id': '311', 'type': 'block', 'children': ['312', '323']}; {'id': '312', 'type': 'expression_statement', 'children': ['313']}, {'id': '313', 'type': 'assignment', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'originalDn'}, {'id': '315', 'type': 'call', 'children': ['316', '319']}; {'id': '316', 'type': 'attribute', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'sub'}, {'id': '319', 'type': 'argument_list', 'children': ['320', '321', '322']}; {'id': '320', 'type': 'string', 'children': [], 'value': "r'[/]*[^/]+$'"}, {'id': '321', 'type': 'string', 'children': [], 'value': "''"}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'originalDn'}, {'id': '323', 'type': 'continue_statement', 'children': []}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'assignment', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'newDn'}, {'id': '327', 'type': 'call', 'children': ['328', '331']}; {'id': '328', 'type': 'attribute', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'sub'}, {'id': '331', 'type': 'argument_list', 'children': ['332', '336', '342']}; {'id': '332', 'type': 'binary_operator', 'children': ['333', '334'], 'value': '%'}, {'id': '333', 'type': 'string', 'children': [], 'value': '"^%s/"'}; {'id': '334', 'type': 'parenthesized_expression', 'children': ['335'], 'value': '()'}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'originalDn'}; {'id': '336', 'type': 'binary_operator', 'children': ['337', '338'], 'value': '%'}, {'id': '337', 'type': 'string', 'children': [], 'value': '"%s/"'}; {'id': '338', 'type': 'parenthesized_expression', 'children': ['339'], 'value': '()'}, {'id': '339', 'type': 'subscript', 'children': ['340', '341']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'xlateMap'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'originalDn'}; {'id': '342', 'type': 'attribute', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'xMO'}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'Dn'}, {'id': '345', 'type': 'expression_statement', 'children': ['346']}; {'id': '346', 'type': 'assignment', 'children': ['347', '350']}, {'id': '347', 'type': 'attribute', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'xMO'}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'Dn'}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'newDn'}, {'id': '351', 'type': 'break_statement', 'children': []}; {'id': '352', 'type': 'return_statement', 'children': ['353']}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'xMO'}

def TranslateManagedObject(mObj, xlateOrg, xlateMap): from UcsBase import UcsUtils, WriteUcsWarning from Mos import OrgOrg xMO = mObj.Clone() xMO.SetHandle(mObj.GetHandle()) if (xlateOrg != None): matchObj = re.match(r'^(org-[\-\.:_a-zA-Z0-9]{1,16}/)*org-[\-\.:_a-zA-Z0-9]{1,16}', xMO.Dn) if matchObj: if UcsUtils.WordL(xMO.classId) == OrgOrg.ClassId(): orgMoMeta = UcsUtils.GetUcsPropertyMeta(UcsUtils.WordU(OrgOrg.ClassId()), "Meta") if orgMoMeta == None: WriteUcsWarning('[Warning]: Could not translate [%s]' % (xMO.Dn)) return xMO matchObj1 = re.findall(r'(\[[^\]]+\])', orgMoMeta.rn) if matchObj1: UpdateMoDnAlongWithNamingProperties(xMO, orgMoMeta, xlateOrg) else: newDn = re.sub("%s" % (matchObj.group(0)), "%s" % (xlateOrg), xMO.Dn) xMO.Dn = newDn else: newDn = re.sub("^%s/" % (matchObj.group(0)), "%s/" % (xlateOrg), xMO.Dn) xMO.Dn = newDn if (xlateMap != None): originalDn = xMO.Dn if originalDn in xlateMap: xMoMeta = UcsUtils.GetUcsPropertyMeta(UcsUtils.WordU(xMO.classId), "Meta") if xMoMeta == None: WriteUcsWarning('[Warning]: Could not translate [%s]' % (originalDn)) return xMO matchObj = re.findall(r'(\[[^\]]+\])', xMoMeta.rn) if matchObj: UpdateMoDnAlongWithNamingProperties(xMO, xMoMeta, xlateMap[originalDn]) else: xMO.Dn = xlateMap[originalDn] else: originalDn = re.sub(r'[/]*[^/]+$', '', originalDn) while (originalDn != None or originalDn == ""): if (not (originalDn in xlateMap)): originalDn = re.sub(r'[/]*[^/]+$', '', originalDn) continue newDn = re.sub("^%s/" % (originalDn), "%s/" % (xlateMap[originalDn]), xMO.Dn) xMO.Dn = newDn break return xMO

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{'id': '16', 'type': 'if_statement', 'children': ['17', '20']}, {'id': '17', 'type': 'comparison_operator', 'children': ['18', '19'], 'value': 'is'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'filePath'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'raise_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'string', 'children': [], 'value': '"filePath parameter is not provided."'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '30']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '29'], 'value': 'is'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '29', 'type': 'None', 'children': []}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'raise_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'string', 'children': [], 'value': '"key parameter is not provided."'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '56']}, {'id': '37', 'type': 'boolean_operator', 'children': ['38', '47'], 'value': 'or'}; {'id': '38', 'type': 'not_operator', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '45']}; {'id': '40', 'type': 'attribute', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'isfile'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'filePath'}, {'id': '47', 'type': 'not_operator', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '54']}, {'id': '49', 'type': 'attribute', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'filePath'}; {'id': '56', 'type': 'block', 'children': ['57']}, {'id': '57', 'type': 'raise_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'binary_operator', 'children': ['62', '63'], 'value': '%'}; {'id': '62', 'type': 'string', 'children': [], 'value': "'[Error]: File <%s> does not exist '"}, {'id': '63', 'type': 'parenthesized_expression', 'children': ['64'], 'value': '()'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'filePath'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'doc'}; {'id': '68', 'type': 'call', 'children': ['69', '76']}, {'id': '69', 'type': 'attribute', 'children': ['70', '75']}; {'id': '70', 'type': 'attribute', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'xml'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'dom'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'minidom'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'parse'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'filePath'}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'topNode'}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'doc'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'documentElement'}; {'id': '84', 'type': 'if_statement', 'children': ['85', '96']}, {'id': '85', 'type': 'boolean_operator', 'children': ['86', '89'], 'value': 'or'}; {'id': '86', 'type': 'comparison_operator', 'children': ['87', '88'], 'value': 'is'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'topNode'}; {'id': '88', 'type': 'None', 'children': []}, {'id': '89', 'type': 'comparison_operator', 'children': ['90', '93'], 'value': '!='}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'topNode'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'localName'}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'UCS_HANDLES'}; {'id': '96', 'type': 'block', 'children': ['97']}, {'id': '97', 'type': 'return_statement', 'children': ['98']}; {'id': '98', 'type': 'None', 'children': []}, {'id': '99', 'type': 'if_statement', 'children': ['100', '106']}; {'id': '100', 'type': 'parenthesized_expression', 'children': ['101'], 'value': '()'}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'topNode'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'hasChildNodes'}, {'id': '105', 'type': 'argument_list', 'children': []}; {'id': '106', 'type': 'block', 'children': ['107', '113', '120']}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'childList'}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'topNode'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'childNodes'}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'childCount'}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'childList'}; {'id': '120', 'type': 'for_statement', 'children': ['121', '122', '126']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'childCount'}; {'id': '126', 'type': 'block', 'children': ['127', '136', '147', '157', '161', '165', '169', '173', '177', '198', '219', '246', '267', '288', '306']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'childNode'}; {'id': '130', 'type': 'call', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'childList'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '136', 'type': 'if_statement', 'children': ['137', '145']}, {'id': '137', 'type': 'parenthesized_expression', 'children': ['138'], 'value': '()'}; {'id': '138', 'type': 'comparison_operator', 'children': ['139', '142'], 'value': '!='}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'nodeType'}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'Node'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'ELEMENT_NODE'}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'continue_statement', 'children': []}, {'id': '147', 'type': 'if_statement', 'children': ['148', '155']}; {'id': '148', 'type': 'comparison_operator', 'children': ['149', '152'], 'value': '!='}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'localName'}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'UCS'}, {'id': '155', 'type': 'block', 'children': ['156']}; {'id': '156', 'type': 'continue_statement', 'children': []}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'lName'}; {'id': '160', 'type': 'None', 'children': []}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'lUsername'}; {'id': '164', 'type': 'None', 'children': []}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'lPassword'}; {'id': '168', 'type': 'None', 'children': []}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'assignment', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'lNoSsl'}; {'id': '172', 'type': 'False', 'children': []}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'lPort'}; {'id': '176', 'type': 'None', 'children': []}, {'id': '177', 'type': 'if_statement', 'children': ['178', '186']}; {'id': '178', 'type': 'call', 'children': ['179', '182']}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}; {'id': '182', 'type': 'argument_list', 'children': ['183']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'NAME'}; {'id': '186', 'type': 'block', 'children': ['187']}, {'id': '187', 'type': 'expression_statement', 'children': ['188']}; {'id': '188', 'type': 'assignment', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'lName'}; {'id': '190', 'type': 'call', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'NAME'}; {'id': '198', 'type': 'if_statement', 'children': ['199', '207']}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'childNode'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}, {'id': '203', 'type': 'argument_list', 'children': ['204']}; {'id': '204', 'type': 'attribute', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'USER_NAME'}, {'id': '207', 'type': 'block', 'children': ['208']}; {'id': '208', 'type': 'expression_statement', 'children': ['209']}, {'id': '209', 'type': 'assignment', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'lUsername'}, {'id': '211', 'type': 'call', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'childNode'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}, {'id': '215', 'type': 'argument_list', 'children': ['216']}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'USER_NAME'}, {'id': '219', 'type': 'if_statement', 'children': ['220', '228']}; {'id': '220', 'type': 'call', 'children': ['221', '224']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}; {'id': '224', 'type': 'argument_list', 'children': ['225']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'PASSWORD'}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'assignment', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'lPassword'}; {'id': '232', 'type': 'call', 'children': ['233', '236']}, {'id': '233', 'type': 'attribute', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'DecryptPassword'}; {'id': '236', 'type': 'argument_list', 'children': ['237', '245']}, {'id': '237', 'type': 'call', 'children': ['238', '241']}; {'id': '238', 'type': 'attribute', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'childNode'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}, {'id': '241', 'type': 'argument_list', 'children': ['242']}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'PASSWORD'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '246', 'type': 'if_statement', 'children': ['247', '255']}, {'id': '247', 'type': 'call', 'children': ['248', '251']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'childNode'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}, {'id': '251', 'type': 'argument_list', 'children': ['252']}; {'id': '252', 'type': 'attribute', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'NO_SSL'}, {'id': '255', 'type': 'block', 'children': ['256']}; {'id': '256', 'type': 'expression_statement', 'children': ['257']}, {'id': '257', 'type': 'assignment', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'lNoSsl'}, {'id': '259', 'type': 'call', 'children': ['260', '263']}; {'id': '260', 'type': 'attribute', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'childNode'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}, {'id': '263', 'type': 'argument_list', 'children': ['264']}; {'id': '264', 'type': 'attribute', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'NO_SSL'}, {'id': '267', 'type': 'if_statement', 'children': ['268', '276']}; {'id': '268', 'type': 'call', 'children': ['269', '272']}, {'id': '269', 'type': 'attribute', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}; {'id': '272', 'type': 'argument_list', 'children': ['273']}, {'id': '273', 'type': 'attribute', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'PORT'}; {'id': '276', 'type': 'block', 'children': ['277']}, {'id': '277', 'type': 'expression_statement', 'children': ['278']}; {'id': '278', 'type': 'assignment', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'lPort'}; {'id': '280', 'type': 'call', 'children': ['281', '284']}, {'id': '281', 'type': 'attribute', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}; {'id': '284', 'type': 'argument_list', 'children': ['285']}, {'id': '285', 'type': 'attribute', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'UcsLoginXml'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'PORT'}; {'id': '288', 'type': 'if_statement', 'children': ['289', '304']}, {'id': '289', 'type': 'parenthesized_expression', 'children': ['290'], 'value': '()'}; {'id': '290', 'type': 'boolean_operator', 'children': ['291', '300'], 'value': 'or'}, {'id': '291', 'type': 'boolean_operator', 'children': ['292', '296'], 'value': 'or'}; {'id': '292', 'type': 'parenthesized_expression', 'children': ['293'], 'value': '()'}, {'id': '293', 'type': 'comparison_operator', 'children': ['294', '295'], 'value': 'is'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'lName'}, {'id': '295', 'type': 'None', 'children': []}; {'id': '296', 'type': 'parenthesized_expression', 'children': ['297'], 'value': '()'}, {'id': '297', 'type': 'comparison_operator', 'children': ['298', '299'], 'value': '=='}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'lUsername'}, {'id': '299', 'type': 'None', 'children': []}; {'id': '300', 'type': 'parenthesized_expression', 'children': ['301'], 'value': '()'}, {'id': '301', 'type': 'comparison_operator', 'children': ['302', '303'], 'value': '=='}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'lPassword'}, {'id': '303', 'type': 'None', 'children': []}; {'id': '304', 'type': 'block', 'children': ['305']}, {'id': '305', 'type': 'continue_statement', 'children': []}; {'id': '306', 'type': 'try_statement', 'children': ['307', '335']}, {'id': '307', 'type': 'block', 'children': ['308', '314']}; {'id': '308', 'type': 'expression_statement', 'children': ['309']}, {'id': '309', 'type': 'assignment', 'children': ['310', '311']}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'handle'}, {'id': '311', 'type': 'call', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'UcsHandle'}, {'id': '313', 'type': 'argument_list', 'children': []}; {'id': '314', 'type': 'expression_statement', 'children': ['315']}, {'id': '315', 'type': 'call', 'children': ['316', '319']}; {'id': '316', 'type': 'attribute', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'handle'}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'Login'}, {'id': '319', 'type': 'argument_list', 'children': ['320', '323', '326', '329', '332']}; {'id': '320', 'type': 'keyword_argument', 'children': ['321', '322']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'lName'}, {'id': '323', 'type': 'keyword_argument', 'children': ['324', '325']}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'lUsername'}; {'id': '326', 'type': 'keyword_argument', 'children': ['327', '328']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'password'}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'lPassword'}, {'id': '329', 'type': 'keyword_argument', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'noSsl'}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'lNoSsl'}; {'id': '332', 'type': 'keyword_argument', 'children': ['333', '334']}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'lPort'}, {'id': '335', 'type': 'except_clause', 'children': ['336', '337', '338']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '338', 'type': 'block', 'children': ['339']}, {'id': '339', 'type': 'expression_statement', 'children': ['340']}; {'id': '340', 'type': 'call', 'children': ['341', '342']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'WriteUcsWarning'}; {'id': '342', 'type': 'argument_list', 'children': ['343']}, {'id': '343', 'type': 'binary_operator', 'children': ['344', '345'], 'value': '%'}; {'id': '344', 'type': 'string', 'children': [], 'value': '"[Connection Error<%s>] %s"'}, {'id': '345', 'type': 'tuple', 'children': ['346', '347']}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'lName'}, {'id': '347', 'type': 'call', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '349', 'type': 'argument_list', 'children': ['350']}

def ImportUcsSession(filePath, key): from UcsBase import UcsUtils, WriteUcsWarning, UcsValidationException if filePath is None: raise UcsValidationException("filePath parameter is not provided.") if key is None: raise UcsValidationException("key parameter is not provided.") if not os.path.isfile(filePath) or not os.path.exists(filePath): raise UcsValidationException('[Error]: File <%s> does not exist ' % (filePath)) doc = xml.dom.minidom.parse(filePath) topNode = doc.documentElement if topNode is None or topNode.localName != UcsLoginXml.UCS_HANDLES: return None if (topNode.hasChildNodes()): childList = topNode.childNodes childCount = len(childList) for i in range(childCount): childNode = childList.item(i) if (childNode.nodeType != Node.ELEMENT_NODE): continue if childNode.localName != UcsLoginXml.UCS: continue lName = None lUsername = None lPassword = None lNoSsl = False lPort = None if childNode.hasAttribute(UcsLoginXml.NAME): lName = childNode.getAttribute(UcsLoginXml.NAME) if childNode.hasAttribute(UcsLoginXml.USER_NAME): lUsername = childNode.getAttribute(UcsLoginXml.USER_NAME) if childNode.hasAttribute(UcsLoginXml.PASSWORD): lPassword = UcsUtils.DecryptPassword(childNode.getAttribute(UcsLoginXml.PASSWORD), key) if childNode.hasAttribute(UcsLoginXml.NO_SSL): lNoSsl = childNode.getAttribute(UcsLoginXml.NO_SSL) if childNode.hasAttribute(UcsLoginXml.PORT): lPort = childNode.getAttribute(UcsLoginXml.PORT) if ((lName is None) or (lUsername == None) or (lPassword == None)): continue try: handle = UcsHandle() handle.Login(name=lName, username=lUsername, password=lPassword, noSsl=lNoSsl, port=lPort) except Exception, err: WriteUcsWarning("[Connection Error<%s>] %s" % (lName, str(err)))

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Cannot execute ImportUcsBackup. Complete or Undo UCS transaction."'}, {'id': '59', 'type': 'if_statement', 'children': ['60', '62']}; {'id': '60', 'type': 'not_operator', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '62', 'type': 'block', 'children': ['63']}, {'id': '63', 'type': 'raise_statement', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'string', 'children': [], 'value': '"path parameter is not provided."'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '78']}, {'id': '69', 'type': 'not_operator', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '76']}, {'id': '71', 'type': 'attribute', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '78', 'type': 'block', 'children': ['79']}, {'id': '79', 'type': 'raise_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'binary_operator', 'children': ['84', '85'], 'value': '%'}; {'id': '84', 'type': 'string', 'children': [], 'value': '"Backup File not found <%s>"'}, {'id': '85', 'type': 'parenthesized_expression', 'children': ['86'], 'value': '()'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'dn'}; {'id': '90', 'type': 'None', 'children': []}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'filePath'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'assignment', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'localFile'}; {'id': '98', 'type': 'call', 'children': ['99', '104']}, {'id': '99', 'type': 'attribute', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'filePath'}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'topSystem'}, {'id': '109', 'type': 'call', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'ManagedObject'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'NamingId'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'TOP_SYSTEM'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '118', 'type': 'call', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'ManagedObject'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'NamingId'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'MGMT_IMPORTER'}; {'id': '124', 'type': 'expression_statement', 'children': ['125']}, {'id': '125', 'type': 'assignment', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'Hostname'}, {'id': '129', 'type': 'binary_operator', 'children': ['130', '139'], 'value': '+'}; {'id': '130', 'type': 'call', 'children': ['131', '138']}, {'id': '131', 'type': 'attribute', 'children': ['132', '137']}; {'id': '132', 'type': 'subscript', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'environ'}; {'id': '136', 'type': 'string', 'children': [], 'value': "'COMPUTERNAME'"}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '138', 'type': 'argument_list', 'children': []}, {'id': '139', 'type': 'call', 'children': ['140', '147']}; {'id': '140', 'type': 'attribute', 'children': ['141', '146']}, {'id': '141', 'type': 'call', 'children': ['142', '145']}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'now'}, {'id': '145', 'type': 'argument_list', 'children': []}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'strftime'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'string', 'children': [], 'value': "'%Y%m%d%H%M'"}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'dn'}; {'id': '152', 'type': 'call', 'children': ['153', '156']}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'MakeDn'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'list', 'children': ['158', '163'], 'value': '[topSystem.MakeRn(), mgmtImporter.MakeRn()]'}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'topSystem'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'MakeRn'}; {'id': '162', 'type': 'argument_list', 'children': []}, {'id': '163', 'type': 'call', 'children': ['164', '167']}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'MakeRn'}, {'id': '167', 'type': 'argument_list', 'children': []}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'assignment', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'Dn'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'dn'}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'Status'}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'Status'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'CREATED'}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'RemoteFile'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'filePath'}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'assignment', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'Proto'}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'MgmtImporter'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'CONST_PROTO_HTTP'}; {'id': '196', 'type': 'expression_statement', 'children': ['197']}, {'id': '197', 'type': 'assignment', 'children': ['198', '201']}; {'id': '198', 'type': 'attribute', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'AdminState'}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'MgmtImporter'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'CONST_ADMIN_STATE_ENABLED'}; {'id': '204', 'type': 'if_statement', 'children': ['205', '206', '215']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'merge'}; {'id': '206', 'type': 'block', 'children': ['207']}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '212']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'Action'}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'MgmtImporter'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'CONST_ACTION_MERGE'}, {'id': '215', 'type': 'else_clause', 'children': ['216']}; {'id': '216', 'type': 'block', 'children': ['217']}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'assignment', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'Action'}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'MgmtImporter'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'CONST_ACTION_REPLACE'}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'assignment', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'inConfig'}; {'id': '228', 'type': 'call', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'ConfigConfig'}; {'id': '230', 'type': 'argument_list', 'children': []}, {'id': '231', 'type': 'expression_statement', 'children': ['232']}; {'id': '232', 'type': 'call', 'children': ['233', '236']}, {'id': '233', 'type': 'attribute', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'inConfig'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'AddChild'}; {'id': '236', 'type': 'argument_list', 'children': ['237']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'mgmtImporter'}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'assignment', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'uri'}, {'id': '241', 'type': 'binary_operator', 'children': ['242', '243'], 'value': '%'}; {'id': '242', 'type': 'string', 'children': [], 'value': '"%s/operations/file-%s/importconfig.txt"'}, {'id': '243', 'type': 'tuple', 'children': ['244', '249']}; {'id': '244', 'type': 'call', 'children': ['245', '248']}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'Uri'}; {'id': '248', 'type': 'argument_list', 'children': []}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'localFile'}; {'id': '250', 'type': 'if_statement', 'children': ['251', '258', '275']}, {'id': '251', 'type': 'comparison_operator', 'children': ['252', '255'], 'value': '<'}; {'id': '252', 'type': 'attribute', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'version_info'}, {'id': '255', 'type': 'tuple', 'children': ['256', '257']}; {'id': '256', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '257', 'type': 'integer', 'children': [], 'value': '6'}; {'id': '258', 'type': 'block', 'children': ['259', '267']}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'assignment', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'uploadFileHandle'}; {'id': '262', 'type': 'call', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '264', 'type': 'argument_list', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'filePath'}; {'id': '266', 'type': 'string', 'children': [], 'value': "'rb'"}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'assignment', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'stream'}; {'id': '270', 'type': 'call', 'children': ['271', '274']}, {'id': '271', 'type': 'attribute', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'uploadFileHandle'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '274', 'type': 'argument_list', 'children': []}, {'id': '275', 'type': 'else_clause', 'children': ['276']}; {'id': '276', 'type': 'block', 'children': ['277', '283']}, {'id': '277', 'type': 'expression_statement', 'children': ['278']}; {'id': '278', 'type': 'assignment', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'progress'}; {'id': '280', 'type': 'call', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'Progress'}; {'id': '282', 'type': 'argument_list', 'children': []}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'assignment', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'stream'}; {'id': '286', 'type': 'call', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'file_with_callback'}; {'id': '288', 'type': 'argument_list', 'children': ['289', '290', '291', '294']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'filePath'}; {'id': '290', 'type': 'string', 'children': [], 'value': "'rb'"}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'progress'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'filePath'}, {'id': '295', 'type': 'expression_statement', 'children': ['296']}; {'id': '296', 'type': 'assignment', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '298', 'type': 'call', 'children': ['299', '302']}, {'id': '299', 'type': 'attribute', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'urllib2'}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'Request'}; {'id': '302', 'type': 'argument_list', 'children': ['303']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'uri'}; {'id': '304', 'type': 'expression_statement', 'children': ['305']}, {'id': '305', 'type': 'call', 'children': ['306', '309']}; {'id': '306', 'type': 'attribute', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'add_header'}, {'id': '309', 'type': 'argument_list', 'children': ['310', '311']}; {'id': '310', 'type': 'string', 'children': [], 'value': "'Cookie'"}, {'id': '311', 'type': 'binary_operator', 'children': ['312', '313'], 'value': '%'}; {'id': '312', 'type': 'string', 'children': [], 'value': "'ucsm-cookie=%s'"}, {'id': '313', 'type': 'parenthesized_expression', 'children': ['314'], 'value': '()'}; {'id': '314', 'type': 'attribute', 'children': ['315', '316']}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '316', 'type': 'identifier', 'children': [], 'value': '_cookie'}, {'id': '317', 'type': 'expression_statement', 'children': ['318']}; {'id': '318', 'type': 'call', 'children': ['319', '322']}, {'id': '319', 'type': 'attribute', 'children': ['320', '321']}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'add_data'}; {'id': '322', 'type': 'argument_list', 'children': ['323']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'stream'}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'assignment', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '327', 'type': 'call', 'children': ['328', '336']}; {'id': '328', 'type': 'attribute', 'children': ['329', '335']}, {'id': '329', 'type': 'call', 'children': ['330', '333']}; {'id': '330', 'type': 'attribute', 'children': ['331', '332']}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'urllib2'}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'urlopen'}, {'id': '333', 'type': 'argument_list', 'children': ['334']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '336', 'type': 'argument_list', 'children': []}, {'id': '337', 'type': 'if_statement', 'children': ['338', '340']}; {'id': '338', 'type': 'not_operator', 'children': ['339']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '340', 'type': 'block', 'children': ['341']}, {'id': '341', 'type': 'raise_statement', 'children': ['342']}; {'id': '342', 'type': 'call', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}; {'id': '344', 'type': 'argument_list', 'children': ['345']}, {'id': '345', 'type': 'string', 'children': [], 'value': '"Unable to upload properly."'}; {'id': '346', 'type': 'expression_statement', 'children': ['347']}, {'id': '347', 'type': 'assignment', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'ccm'}, {'id': '349', 'type': 'call', 'children': ['350', '353']}; {'id': '350', 'type': 'attribute', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'ConfigConfMo'}, {'id': '353', 'type': 'argument_list', 'children': ['354', '357', '360', '365']}; {'id': '354', 'type': 'keyword_argument', 'children': ['355', '356']}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'dn'}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'dn'}, {'id': '357', 'type': 'keyword_argument', 'children': ['358', '359']}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'inConfig'}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'inConfig'}; {'id': '360', 'type': 'keyword_argument', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'inHierarchical'}; {'id': '362', 'type': 'attribute', 'children': ['363', '364']}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'YesOrNo'}; {'id': '364', 'type': 'identifier', 'children': [], 'value': 'FALSE'}, {'id': '365', 'type': 'keyword_argument', 'children': ['366', '367']}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'dumpXml'}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'dumpXml'}; {'id': '368', 'type': 'if_statement', 'children': ['369', '375']}, {'id': '369', 'type': 'parenthesized_expression', 'children': ['370'], 'value': '()'}; {'id': '370', 'type': 'comparison_operator', 'children': ['371', '374'], 'value': '!='}, {'id': '371', 'type': 'attribute', 'children': ['372', '373']}; {'id': '372', 'type': 'identifier', 'children': [], 'value': 'ccm'}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'errorCode'}; {'id': '374', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '375', 'type': 'block', 'children': ['376']}; {'id': '376', 'type': 'raise_statement', 'children': ['377']}, {'id': '377', 'type': 'call', 'children': ['378', '379']}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'UcsException'}, {'id': '379', 'type': 'argument_list', 'children': ['380', '383']}; {'id': '380', 'type': 'attribute', 'children': ['381', '382']}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'ccm'}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'errorCode'}, {'id': '383', 'type': 'attribute', 'children': ['384', '385']}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'ccm'}, {'id': '385', 'type': 'identifier', 'children': [], 'value': 'errorDescr'}; {'id': '386', 'type': 'return_statement', 'children': ['387']}, {'id': '387', 'type': 'call', 'children': ['388', '393']}; {'id': '388', 'type': 'attribute', 'children': ['389', '392']}, {'id': '389', 'type': 'attribute', 'children': ['390', '391']}; {'id': '390', 'type': 'identifier', 'children': [], 'value': 'ccm'}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'OutConfig'}; {'id': '392', 'type': 'identifier', 'children': [], 'value': 'GetChild'}, {'id': '393', 'type': 'argument_list', 'children': []}

def ImportUcsBackup(self, path=None, merge=False, dumpXml=False): from UcsBase import WriteUcsWarning, UcsUtils, ManagedObject, WriteObject, UcsUtils, UcsException, \ UcsValidationException from Ucs import ConfigConfig from Mos import MgmtImporter from datetime import datetime if (self._transactionInProgress): raise UcsValidationException( "UCS transaction in progress. Cannot execute ImportUcsBackup. Complete or Undo UCS transaction.") if not path: raise UcsValidationException("path parameter is not provided.") if not os.path.exists(path): raise UcsValidationException("Backup File not found <%s>" % (path)) dn = None filePath = path localFile = os.path.basename(filePath) topSystem = ManagedObject(NamingId.TOP_SYSTEM) mgmtImporter = ManagedObject(NamingId.MGMT_IMPORTER) mgmtImporter.Hostname = os.environ['COMPUTERNAME'].lower() + datetime.now().strftime('%Y%m%d%H%M') dn = UcsUtils.MakeDn([topSystem.MakeRn(), mgmtImporter.MakeRn()]) mgmtImporter.Dn = dn mgmtImporter.Status = Status.CREATED mgmtImporter.RemoteFile = filePath mgmtImporter.Proto = MgmtImporter.CONST_PROTO_HTTP mgmtImporter.AdminState = MgmtImporter.CONST_ADMIN_STATE_ENABLED if merge: mgmtImporter.Action = MgmtImporter.CONST_ACTION_MERGE else: mgmtImporter.Action = MgmtImporter.CONST_ACTION_REPLACE inConfig = ConfigConfig() inConfig.AddChild(mgmtImporter) uri = "%s/operations/file-%s/importconfig.txt" % (self.Uri(), localFile) if sys.version_info < (2, 6): uploadFileHandle = open(filePath, 'rb') stream = uploadFileHandle.read() else: progress = Progress() stream = file_with_callback(filePath, 'rb', progress.update, filePath) request = urllib2.Request(uri) request.add_header('Cookie', 'ucsm-cookie=%s' % (self._cookie)) request.add_data(stream) response = urllib2.urlopen(request).read() if not response: raise UcsValidationException("Unable to upload properly.") ccm = self.ConfigConfMo(dn=dn, inConfig=inConfig, inHierarchical=YesOrNo.FALSE, dumpXml=dumpXml) if (ccm.errorCode != 0): raise UcsException(ccm.errorCode, ccm.errorDescr) return ccm.OutConfig.GetChild()

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_set_suffix_links'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '14']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''\n Sets all suffix links in all nodes in this trie.\n '''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': '_suffix_links_set'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'for_statement', 'children': ['15', '18', '23']}, {'id': '15', 'type': 'pattern_list', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'bfs'}; {'id': '22', 'type': 'argument_list', 'children': []}, {'id': '23', 'type': 'block', 'children': ['24', '30', '38', '49', '55', '59', '103', '109', '125']}; {'id': '24', 'type': 'if_statement', 'children': ['25', '28']}, {'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'is'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '27', 'type': 'None', 'children': []}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'continue_statement', 'children': []}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'longest_prefix'}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'longest_prefix'}; {'id': '38', 'type': 'if_statement', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'has_value'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'longest_prefix'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '49', 'type': 'if_statement', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'has_suffix'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'continue_statement', 'children': []}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '59', 'type': 'while_statement', 'children': ['60', '61']}; {'id': '60', 'type': 'True', 'children': []}, {'id': '61', 'type': 'block', 'children': ['62', '85']}; {'id': '62', 'type': 'if_statement', 'children': ['63', '67', '77']}, {'id': '63', 'type': 'not_operator', 'children': ['64']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'has_suffix'}, {'id': '67', 'type': 'block', 'children': ['68', '76']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '76', 'type': 'break_statement', 'children': []}, {'id': '77', 'type': 'else_clause', 'children': ['78']}; {'id': '78', 'type': 'block', 'children': ['79']}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '85', 'type': 'if_statement', 'children': ['86', '91']}; {'id': '86', 'type': 'comparison_operator', 'children': ['87', '90'], 'value': 'in'}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'uplink'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '91', 'type': 'block', 'children': ['92', '102']}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'assignment', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '97', 'type': 'subscript', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'uplink'}; {'id': '102', 'type': 'break_statement', 'children': []}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '109', 'type': 'while_statement', 'children': ['110', '118']}; {'id': '110', 'type': 'boolean_operator', 'children': ['111', '115'], 'value': 'and'}, {'id': '111', 'type': 'not_operator', 'children': ['112']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'has_value'}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'has_suffix'}; {'id': '118', 'type': 'block', 'children': ['119']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '125', 'type': 'if_statement', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'has_value'}, {'id': '129', 'type': 'block', 'children': ['130']}; {'id': '130', 'type': 'expression_statement', 'children': ['131']}, {'id': '131', 'type': 'assignment', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'dict_suffix'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'suffix'}

def _set_suffix_links(self): ''' Sets all suffix links in all nodes in this trie. ''' self._suffix_links_set = True for current, parent in self.bfs(): if parent is None: continue current.longest_prefix = parent.longest_prefix if parent.has_value: current.longest_prefix = parent if current.has_suffix: continue suffix = parent while True: if not suffix.has_suffix: current.suffix = self.root break else: suffix = suffix.suffix if current.uplink in suffix: current.suffix = suffix[current.uplink] break suffix = current.suffix while not suffix.has_value and suffix.has_suffix: suffix = suffix.suffix if suffix.has_value: current.dict_suffix = suffix

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_write_mo'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'mo'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '27', '31', '35', '73', '84', '216', '270', '297', '301']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'classNotFound'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'if_statement', 'children': ['11', '22']}, {'id': '11', 'type': 'parenthesized_expression', 'children': ['12'], 'value': '()'}; {'id': '12', 'type': 'comparison_operator', 'children': ['13', '21'], 'value': '=='}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'FindClassIdInMoMetaIgnoreCase'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'mo'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'classId'}, {'id': '21', 'type': 'None', 'children': []}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'classNotFound'}; {'id': '26', 'type': 'True', 'children': []}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'tabsize'}; {'id': '30', 'type': 'integer', 'children': [], 'value': '8'}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'outstr'}; {'id': '34', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '35', 'type': 'if_statement', 'children': ['36', '37', '56']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'classNotFound'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'augmented_assignment', 'children': ['40', '41'], 'value': '+='}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'outstr'}, {'id': '41', 'type': 'binary_operator', 'children': ['42', '55'], 'value': '+'}; {'id': '42', 'type': 'binary_operator', 'children': ['43', '44'], 'value': '+'}, {'id': '43', 'type': 'string', 'children': [], 'value': '"Managed Object\\t\\t\\t:\\t"'}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'WordU'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'mo'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'classId'}, {'id': '55', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '56', 'type': 'else_clause', 'children': ['57']}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'augmented_assignment', 'children': ['60', '61'], 'value': '+='}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'outstr'}, {'id': '61', 'type': 'binary_operator', 'children': ['62', '72'], 'value': '+'}; {'id': '62', 'type': 'binary_operator', 'children': ['63', '64'], 'value': '+'}, {'id': '63', 'type': 'string', 'children': [], 'value': '"Managed Object\\t\\t\\t:\\t"'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'attribute', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'mo'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'propMoMeta'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '72', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'augmented_assignment', 'children': ['75', '76'], 'value': '+='}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'outstr'}; {'id': '76', 'type': 'binary_operator', 'children': ['77', '83'], 'value': '+'}, {'id': '77', 'type': 'binary_operator', 'children': ['78', '79'], 'value': '*'}; {'id': '78', 'type': 'string', 'children': [], 'value': '"-"'}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'string', 'children': [], 'value': '"Managed Object"'}, {'id': '83', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '84', 'type': 'if_statement', 'children': ['85', '88', '159']}, {'id': '85', 'type': 'parenthesized_expression', 'children': ['86'], 'value': '()'}; {'id': '86', 'type': 'not_operator', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'classNotFound'}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'for_statement', 'children': ['90', '91', '101']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'prop'}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'GetUcsPropertyMetaAttributeList'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'attribute', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'mo'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'propMoMeta'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '101', 'type': 'block', 'children': ['102', '116', '127', '136']}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'propMeta'}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'GetUcsPropertyMeta'}, {'id': '109', 'type': 'argument_list', 'children': ['110', '115']}; {'id': '110', 'type': 'attribute', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'mo'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'propMoMeta'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'prop'}; {'id': '116', 'type': 'if_statement', 'children': ['117', '125']}, {'id': '117', 'type': 'parenthesized_expression', 'children': ['118'], 'value': '()'}; {'id': '118', 'type': 'comparison_operator', 'children': ['119', '122'], 'value': '=='}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'propMeta'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'access'}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'UcsPropertyMeta'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'Internal'}, {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'continue_statement', 'children': []}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '130', 'type': 'call', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'mo'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'prop'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'augmented_assignment', 'children': ['138', '139'], 'value': '+='}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'outstr'}, {'id': '139', 'type': 'binary_operator', 'children': ['140', '158'], 'value': '+'}; {'id': '140', 'type': 'binary_operator', 'children': ['141', '154'], 'value': '+'}, {'id': '141', 'type': 'binary_operator', 'children': ['142', '153'], 'value': '+'}; {'id': '142', 'type': 'call', 'children': ['143', '149']}, {'id': '143', 'type': 'attribute', 'children': ['144', '148']}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '146', 'type': 'argument_list', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'prop'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'ljust'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'binary_operator', 'children': ['151', '152'], 'value': '*'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'tabsize'}; {'id': '152', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '153', 'type': 'string', 'children': [], 'value': "':'"}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '158', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '159', 'type': 'else_clause', 'children': ['160']}; {'id': '160', 'type': 'block', 'children': ['161']}, {'id': '161', 'type': 'for_statement', 'children': ['162', '163', '166']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'prop'}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'mo'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': '__dict__'}; {'id': '166', 'type': 'block', 'children': ['167', '180', '188']}, {'id': '167', 'type': 'if_statement', 'children': ['168', '178']}; {'id': '168', 'type': 'parenthesized_expression', 'children': ['169'], 'value': '()'}, {'id': '169', 'type': 'comparison_operator', 'children': ['170', '171'], 'value': 'in'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'prop'}, {'id': '171', 'type': 'list', 'children': ['172', '173', '174', '175', '176', '177'], 'value': "['classId', 'XtraProperty', 'handle', 'propMoMeta', 'dirtyMask', 'child']"}; {'id': '172', 'type': 'string', 'children': [], 'value': "'classId'"}, {'id': '173', 'type': 'string', 'children': [], 'value': "'XtraProperty'"}; {'id': '174', 'type': 'string', 'children': [], 'value': "'handle'"}, {'id': '175', 'type': 'string', 'children': [], 'value': "'propMoMeta'"}; {'id': '176', 'type': 'string', 'children': [], 'value': "'dirtyMask'"}, {'id': '177', 'type': 'string', 'children': [], 'value': "'child'"}; {'id': '178', 'type': 'block', 'children': ['179']}, {'id': '179', 'type': 'continue_statement', 'children': []}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'assignment', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'val'}, {'id': '183', 'type': 'subscript', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'mo'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': '__dict__'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'prop'}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'augmented_assignment', 'children': ['190', '191'], 'value': '+='}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'outstr'}, {'id': '191', 'type': 'binary_operator', 'children': ['192', '215'], 'value': '+'}; {'id': '192', 'type': 'binary_operator', 'children': ['193', '211'], 'value': '+'}, {'id': '193', 'type': 'binary_operator', 'children': ['194', '210'], 'value': '+'}; {'id': '194', 'type': 'call', 'children': ['195', '206']}, {'id': '195', 'type': 'attribute', 'children': ['196', '205']}; {'id': '196', 'type': 'call', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '198', 'type': 'argument_list', 'children': ['199']}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'WordU'}, {'id': '203', 'type': 'argument_list', 'children': ['204']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'prop'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'ljust'}; {'id': '206', 'type': 'argument_list', 'children': ['207']}, {'id': '207', 'type': 'binary_operator', 'children': ['208', '209'], 'value': '*'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'tabsize'}, {'id': '209', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '210', 'type': 'string', 'children': [], 'value': "':'"}, {'id': '211', 'type': 'call', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '213', 'type': 'argument_list', 'children': ['214']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'val'}, {'id': '215', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '216', 'type': 'if_statement', 'children': ['217', '225']}, {'id': '217', 'type': 'call', 'children': ['218', '223']}; {'id': '218', 'type': 'attribute', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'mo'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': '__dict__'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'has_key'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'string', 'children': [], 'value': "'XtraProperty'"}, {'id': '225', 'type': 'block', 'children': ['226']}; {'id': '226', 'type': 'for_statement', 'children': ['227', '228', '233']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'xtraProp'}; {'id': '228', 'type': 'subscript', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'mo'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': '__dict__'}; {'id': '232', 'type': 'string', 'children': [], 'value': "'XtraProperty'"}, {'id': '233', 'type': 'block', 'children': ['234']}; {'id': '234', 'type': 'expression_statement', 'children': ['235']}, {'id': '235', 'type': 'augmented_assignment', 'children': ['236', '237'], 'value': '+='}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'outstr'}, {'id': '237', 'type': 'binary_operator', 'children': ['238', '269'], 'value': '+'}; {'id': '238', 'type': 'binary_operator', 'children': ['239', '259'], 'value': '+'}, {'id': '239', 'type': 'binary_operator', 'children': ['240', '258'], 'value': '+'}; {'id': '240', 'type': 'binary_operator', 'children': ['241', '242'], 'value': '+'}, {'id': '241', 'type': 'string', 'children': [], 'value': "'[X]'"}; {'id': '242', 'type': 'call', 'children': ['243', '254']}, {'id': '243', 'type': 'attribute', 'children': ['244', '253']}; {'id': '244', 'type': 'call', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'call', 'children': ['248', '251']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'WordU'}, {'id': '251', 'type': 'argument_list', 'children': ['252']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'xtraProp'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'ljust'}; {'id': '254', 'type': 'argument_list', 'children': ['255']}, {'id': '255', 'type': 'binary_operator', 'children': ['256', '257'], 'value': '*'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'tabsize'}, {'id': '257', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '258', 'type': 'string', 'children': [], 'value': "':'"}, {'id': '259', 'type': 'call', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '261', 'type': 'argument_list', 'children': ['262']}; {'id': '262', 'type': 'subscript', 'children': ['263', '268']}, {'id': '263', 'type': 'subscript', 'children': ['264', '267']}; {'id': '264', 'type': 'attribute', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'mo'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': '__dict__'}, {'id': '267', 'type': 'string', 'children': [], 'value': "'XtraProperty'"}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'xtraProp'}, {'id': '269', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '270', 'type': 'expression_statement', 'children': ['271']}, {'id': '271', 'type': 'augmented_assignment', 'children': ['272', '273'], 'value': '+='}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'outstr'}, {'id': '273', 'type': 'binary_operator', 'children': ['274', '296'], 'value': '+'}; {'id': '274', 'type': 'binary_operator', 'children': ['275', '288'], 'value': '+'}, {'id': '275', 'type': 'binary_operator', 'children': ['276', '287'], 'value': '+'}; {'id': '276', 'type': 'call', 'children': ['277', '283']}, {'id': '277', 'type': 'attribute', 'children': ['278', '282']}; {'id': '278', 'type': 'call', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '280', 'type': 'argument_list', 'children': ['281']}, {'id': '281', 'type': 'string', 'children': [], 'value': '"Ucs"'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'ljust'}, {'id': '283', 'type': 'argument_list', 'children': ['284']}; {'id': '284', 'type': 'binary_operator', 'children': ['285', '286'], 'value': '*'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'tabsize'}; {'id': '286', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '287', 'type': 'string', 'children': [], 'value': "':'"}; {'id': '288', 'type': 'call', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'attribute', 'children': ['292', '295']}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'mo'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'handle'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': '_ucs'}; {'id': '296', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '297', 'type': 'expression_statement', 'children': ['298']}; {'id': '298', 'type': 'augmented_assignment', 'children': ['299', '300'], 'value': '+='}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'outstr'}; {'id': '300', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '301', 'type': 'return_statement', 'children': ['302']}

def _write_mo(mo): classNotFound = False if (UcsUtils.FindClassIdInMoMetaIgnoreCase(mo.classId) == None): classNotFound = True tabsize = 8 outstr = "\n" if classNotFound: outstr += "Managed Object\t\t\t:\t" + str(UcsUtils.WordU(mo.classId)) + "\n" else: outstr += "Managed Object\t\t\t:\t" + str(mo.propMoMeta.name) + "\n" outstr += "-" * len("Managed Object") + "\n" if (not classNotFound): for prop in UcsUtils.GetUcsPropertyMetaAttributeList(mo.propMoMeta.name): propMeta = UcsUtils.GetUcsPropertyMeta(mo.propMoMeta.name, prop) if (propMeta.access == UcsPropertyMeta.Internal): continue val = mo.getattr(prop) outstr += str(prop).ljust(tabsize * 4) + ':' + str(val) + "\n" else: for prop in mo.__dict__: if (prop in ['classId', 'XtraProperty', 'handle', 'propMoMeta', 'dirtyMask', 'child']): continue val = mo.__dict__[prop] outstr += str(UcsUtils.WordU(prop)).ljust(tabsize * 4) + ':' + str(val) + "\n" if mo.__dict__.has_key('XtraProperty'): for xtraProp in mo.__dict__['XtraProperty']: outstr += '[X]' + str(UcsUtils.WordU(xtraProp)).ljust(tabsize * 4) + ':' + str( mo.__dict__['XtraProperty'][xtraProp]) + "\n" outstr += str("Ucs").ljust(tabsize * 4) + ':' + str(mo.handle._ucs) + "\n" outstr += "\n" return outstr

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{'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'hasAttributes'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '28', '35', '141']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'attributes'}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'attributes'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'attCount'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; 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{'id': '48', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'WordU'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'attNode'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'localName'}; {'id': '62', 'type': 'if_statement', 'children': ['63', '74', '121']}, {'id': '63', 'type': 'parenthesized_expression', 'children': ['64'], 'value': '()'}; {'id': '64', 'type': 'comparison_operator', 'children': ['65', '73'], 'value': '!='}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'FindClassIdInMoMetaIgnoreCase'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'classId'}, {'id': '73', 'type': 'None', 'children': []}; {'id': '74', 'type': 'block', 'children': ['75']}, {'id': '75', 'type': 'if_statement', 'children': ['76', '87', '101']}; {'id': '76', 'type': 'parenthesized_expression', 'children': ['77'], 'value': '()'}, {'id': '77', 'type': 'comparison_operator', 'children': ['78', '79'], 'value': 'in'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'attr'}, {'id': '79', 'type': 'call', 'children': ['80', '83']}; 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{'id': '96', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'attNode'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '101', 'type': 'else_clause', 'children': ['102']}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'call', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'setattr'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '115']}, {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'WordU'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'attr'}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'attNode'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '121', 'type': 'else_clause', 'children': ['122']}; {'id': '122', 'type': 'block', 'children': ['123']}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'call', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'setattr'}; {'id': '128', 'type': 'argument_list', 'children': ['129', '135']}, {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'WordU'}, {'id': '133', 'type': 'argument_list', 'children': ['134']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'attr'}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'attNode'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '141', 'type': 'if_statement', 'children': ['142', '159']}; {'id': '142', 'type': 'boolean_operator', 'children': ['143', '151'], 'value': 'and'}, {'id': '143', 'type': 'comparison_operator', 'children': ['144', '150'], 'value': '=='}; {'id': '144', 'type': 'call', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'string', 'children': [], 'value': '"Rn"'}; {'id': '150', 'type': 'None', 'children': []}, {'id': '151', 'type': 'comparison_operator', 'children': ['152', '158'], 'value': '!='}; {'id': '152', 'type': 'call', 'children': ['153', '156']}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'string', 'children': [], 'value': '"Dn"'}; {'id': '158', 'type': 'None', 'children': []}, {'id': '159', 'type': 'block', 'children': ['160']}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'setattr'}, {'id': '165', 'type': 'argument_list', 'children': ['166', '167']}; {'id': '166', 'type': 'string', 'children': [], 'value': '"Rn"'}, {'id': '167', 'type': 'call', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '169', 'type': 'argument_list', 'children': ['170']}; {'id': '170', 'type': 'call', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'sub'}; {'id': '174', 'type': 'argument_list', 'children': ['175', '176', '177']}, {'id': '175', 'type': 'string', 'children': [], 'value': "r'^.*/'"}; {'id': '176', 'type': 'string', 'children': [], 'value': "''"}, {'id': '177', 'type': 'call', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '181', 'type': 'argument_list', 'children': ['182']}; {'id': '182', 'type': 'string', 'children': [], 'value': '"Dn"'}, {'id': '183', 'type': 'if_statement', 'children': ['184', '190']}; {'id': '184', 'type': 'parenthesized_expression', 'children': ['185'], 'value': '()'}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'hasChildNodes'}, {'id': '189', 'type': 'argument_list', 'children': []}; {'id': '190', 'type': 'block', 'children': ['191', '197', '204']}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'childList'}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'childNodes'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'childCount'}; {'id': '200', 'type': 'call', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '202', 'type': 'argument_list', 'children': ['203']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'childList'}; {'id': '204', 'type': 'for_statement', 'children': ['205', '206', '210']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '206', 'type': 'call', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '208', 'type': 'argument_list', 'children': ['209']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'childCount'}; {'id': '210', 'type': 'block', 'children': ['211', '220', '231', '243', '257', '266']}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'childNode'}; {'id': '214', 'type': 'call', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'childList'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '218', 'type': 'argument_list', 'children': ['219']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '220', 'type': 'if_statement', 'children': ['221', '229']}, {'id': '221', 'type': 'parenthesized_expression', 'children': ['222'], 'value': '()'}; {'id': '222', 'type': 'comparison_operator', 'children': ['223', '226'], 'value': '!='}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'nodeType'}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'Node'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'ELEMENT_NODE'}, {'id': '229', 'type': 'block', 'children': ['230']}; {'id': '230', 'type': 'continue_statement', 'children': []}, {'id': '231', 'type': 'if_statement', 'children': ['232', '241']}; {'id': '232', 'type': 'comparison_operator', 'children': ['233', '236'], 'value': 'in'}, {'id': '233', 'type': 'attribute', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'localName'}; {'id': '236', 'type': 'attribute', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'propMoMeta'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'fieldNames'}, {'id': '241', 'type': 'block', 'children': ['242']}; {'id': '242', 'type': 'pass_statement', 'children': []}, {'id': '243', 'type': 'expression_statement', 'children': ['244']}; {'id': '244', 'type': 'assignment', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '246', 'type': 'call', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'ManagedObject'}; {'id': '248', 'type': 'argument_list', 'children': ['249']}, {'id': '249', 'type': 'call', 'children': ['250', '253']}; {'id': '250', 'type': 'attribute', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'WordU'}, {'id': '253', 'type': 'argument_list', 'children': ['254']}; {'id': '254', 'type': 'attribute', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'childNode'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'localName'}, {'id': '257', 'type': 'expression_statement', 'children': ['258']}; {'id': '258', 'type': 'call', 'children': ['259', '264']}, {'id': '259', 'type': 'attribute', 'children': ['260', '263']}; {'id': '260', 'type': 'attribute', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'child'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'call', 'children': ['268', '271']}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'LoadFromXml'}, {'id': '271', 'type': 'argument_list', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'childNode'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'handle'}

def LoadFromXml(self, node, handle): self.SetHandle(handle) if node.hasAttributes(): attributes = node.attributes attCount = len(attributes) for i in range(attCount): attNode = attributes.item(i) attr = UcsUtils.WordU(attNode.localName) if (UcsUtils.FindClassIdInMoMetaIgnoreCase(self.classId) != None): if (attr in UcsUtils.GetUcsPropertyMetaAttributeList(self.classId)): self.setattr(attr, str(attNode.value)) else: self.setattr(UcsUtils.WordU(attr), str(attNode.value)) else: self.setattr(UcsUtils.WordU(attr), str(attNode.value)) if self.getattr("Rn") == None and self.getattr("Dn") != None: self.setattr("Rn", str(re.sub(r'^.*/', '', self.getattr("Dn")))) if (node.hasChildNodes()): childList = node.childNodes childCount = len(childList) for i in range(childCount): childNode = childList.item(i) if (childNode.nodeType != Node.ELEMENT_NODE): continue if childNode.localName in self.propMoMeta.fieldNames: pass c = ManagedObject(UcsUtils.WordU(childNode.localName)) self.child.append(c) c.LoadFromXml(childNode, handle)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'GetJavaInstallationPath'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '10']}, {'id': '5', 'type': 'import_statement', 'children': ['6', '8']}; {'id': '6', 'type': 'dotted_name', 'children': ['7']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '8', 'type': 'dotted_name', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'platform'}; {'id': '10', 'type': 'if_statement', 'children': ['11', '18', '85']}, {'id': '11', 'type': 'comparison_operator', 'children': ['12', '17'], 'value': '=='}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'platform'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'system'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'string', 'children': [], 'value': '"Linux"'}; {'id': '18', 'type': 'block', 'children': ['19', '30']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '22', 'type': 'call', 'children': ['23', '28']}, {'id': '23', 'type': 'attribute', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'environ'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'string', 'children': [], 'value': "'JAVA_HOME'"}; {'id': '30', 'type': 'if_statement', 'children': ['31', '33', '39']}, {'id': '31', 'type': 'not_operator', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'raise_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'string', 'children': [], 'value': '"Please make sure JAVA is installed and variable JAVA_HOME is set properly."'}, {'id': '39', 'type': 'else_clause', 'children': ['40']}; {'id': '40', 'type': 'block', 'children': ['41', '53', '65']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '44', 'type': 'call', 'children': ['45', '50']}, {'id': '45', 'type': 'attribute', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '52', 'type': 'string', 'children': [], 'value': "'bin'"}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '56', 'type': 'call', 'children': ['57', '62']}, {'id': '57', 'type': 'attribute', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '62', 'type': 'argument_list', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '64', 'type': 'string', 'children': [], 'value': "'javaws'"}, {'id': '65', 'type': 'if_statement', 'children': ['66', '75', '81']}; {'id': '66', 'type': 'not_operator', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '73']}; {'id': '68', 'type': 'attribute', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'raise_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'string', 'children': [], 'value': '"javaws is not installed on System."'}, {'id': '81', 'type': 'else_clause', 'children': ['82']}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'return_statement', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '85', 'type': 'elif_clause', 'children': ['86', '101']}; {'id': '86', 'type': 'boolean_operator', 'children': ['87', '94'], 'value': 'or'}, {'id': '87', 'type': 'comparison_operator', 'children': ['88', '93'], 'value': '=='}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'platform'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'system'}; {'id': '92', 'type': 'argument_list', 'children': []}, {'id': '93', 'type': 'string', 'children': [], 'value': '"Windows"'}; {'id': '94', 'type': 'comparison_operator', 'children': ['95', '100'], 'value': '=='}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'platform'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'system'}, {'id': '99', 'type': 'argument_list', 'children': []}; {'id': '100', 'type': 'string', 'children': [], 'value': '"Microsoft"'}, {'id': '101', 'type': 'block', 'children': ['102', '113', '127', '141']}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '105', 'type': 'call', 'children': ['106', '111']}; {'id': '106', 'type': 'attribute', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'environ'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'string', 'children': [], 'value': "'JAVA_HOME'"}, {'id': '113', 'type': 'if_statement', 'children': ['114', '117']}; {'id': '114', 'type': 'comparison_operator', 'children': ['115', '116'], 'value': '=='}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '116', 'type': 'None', 'children': []}, {'id': '117', 'type': 'block', 'children': ['118']}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'CheckRegistryKey'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'string', 'children': [], 'value': 'r"SOFTWARE\\\\JavaSoft\\\\Java Runtime Environment\\\\"'}, {'id': '127', 'type': 'if_statement', 'children': ['128', '131']}; {'id': '128', 'type': 'comparison_operator', 'children': ['129', '130'], 'value': '=='}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '130', 'type': 'None', 'children': []}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'UcsUtils'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'CheckRegistryKey'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'string', 'children': [], 'value': 'r"SOFTWARE\\\\Wow6432Node\\\\JavaSoft\\\\Java Runtime Environment"'}, {'id': '141', 'type': 'if_statement', 'children': ['142', '144', '150']}; {'id': '142', 'type': 'not_operator', 'children': ['143']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '144', 'type': 'block', 'children': ['145']}, {'id': '145', 'type': 'raise_statement', 'children': ['146']}; {'id': '146', 'type': 'call', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'string', 'children': [], 'value': '"Please make sure JAVA is installed."'}; {'id': '150', 'type': 'else_clause', 'children': ['151']}, {'id': '151', 'type': 'block', 'children': ['152', '164', '176']}; {'id': '152', 'type': 'expression_statement', 'children': ['153']}, {'id': '153', 'type': 'assignment', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '155', 'type': 'call', 'children': ['156', '161']}; {'id': '156', 'type': 'attribute', 'children': ['157', '160']}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '161', 'type': 'argument_list', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '163', 'type': 'string', 'children': [], 'value': "'bin'"}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '167', 'type': 'call', 'children': ['168', '173']}; {'id': '168', 'type': 'attribute', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '173', 'type': 'argument_list', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '175', 'type': 'string', 'children': [], 'value': "'javaws.exe'"}; {'id': '176', 'type': 'if_statement', 'children': ['177', '186', '192']}, {'id': '177', 'type': 'not_operator', 'children': ['178']}; {'id': '178', 'type': 'call', 'children': ['179', '184']}, {'id': '179', 'type': 'attribute', 'children': ['180', '183']}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '186', 'type': 'block', 'children': ['187']}, {'id': '187', 'type': 'raise_statement', 'children': ['188']}; {'id': '188', 'type': 'call', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'UcsValidationException'}; {'id': '190', 'type': 'argument_list', 'children': ['191']}, {'id': '191', 'type': 'string', 'children': [], 'value': '"javaws.exe is not installed on System."'}; {'id': '192', 'type': 'else_clause', 'children': ['193']}, {'id': '193', 'type': 'block', 'children': ['194']}; {'id': '194', 'type': 'return_statement', 'children': ['195']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'path'}

def GetJavaInstallationPath(): import os, platform if platform.system() == "Linux": path = os.environ.get('JAVA_HOME') if not path: raise UcsValidationException( "Please make sure JAVA is installed and variable JAVA_HOME is set properly.") else: path = os.path.join(path, 'bin') path = os.path.join(path, 'javaws') if not os.path.exists(path): raise UcsValidationException("javaws is not installed on System.") else: return path elif platform.system() == "Windows" or platform.system() == "Microsoft": path = os.environ.get('JAVA_HOME') if path == None: path = UcsUtils.CheckRegistryKey(r"SOFTWARE\\JavaSoft\\Java Runtime Environment\\") if path == None: path = UcsUtils.CheckRegistryKey(r"SOFTWARE\\Wow6432Node\\JavaSoft\\Java Runtime Environment") if not path: raise UcsValidationException("Please make sure JAVA is installed.") else: path = os.path.join(path, 'bin') path = os.path.join(path, 'javaws.exe') if not os.path.exists(path): raise UcsValidationException("javaws.exe is not installed on System.") else: return path

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'GetSyncMoConfig'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'ConfigDoc'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '19', '245']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'moConfigMap'}, {'id': '9', 'type': 'dictionary', 'children': []}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'configList'}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'ConfigDoc'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'getElementsByTagName'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'string', 'children': [], 'value': '"mo"'}, {'id': '19', 'type': 'for_statement', 'children': ['20', '21', '22']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'configList'}; {'id': '22', 'type': 'block', 'children': ['23', '27', '31', '35', '39', '43', '47', '51', '55', '72', '89', '106', '123', '140', '157', '174', '191', '195', '212']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'classId'}; {'id': '26', 'type': 'None', 'children': []}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'noun'}; {'id': '30', 'type': 'None', 'children': []}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'version'}; {'id': '34', 'type': 'None', 'children': []}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'actionVersion'}; {'id': '38', 'type': 'None', 'children': []}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '42', 'type': 'None', 'children': []}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ignoreReason'}; {'id': '46', 'type': 'None', 'children': []}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '50', 'type': 'None', 'children': []}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'excludeList'}; {'id': '54', 'type': 'None', 'children': []}, {'id': '55', 'type': 'if_statement', 'children': ['56', '62']}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'string', 'children': [], 'value': '"classid"'}; {'id': '62', 'type': 'block', 'children': ['63']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'classId'}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'string', 'children': [], 'value': '"classid"'}; {'id': '72', 'type': 'if_statement', 'children': ['73', '79']}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'string', 'children': [], 'value': '"noun"'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'noun'}, {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'string', 'children': [], 'value': '"noun"'}, {'id': '89', 'type': 'if_statement', 'children': ['90', '96']}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'string', 'children': [], 'value': '"version"'}; {'id': '96', 'type': 'block', 'children': ['97']}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'version'}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'string', 'children': [], 'value': '"version"'}; {'id': '106', 'type': 'if_statement', 'children': ['107', '113']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'string', 'children': [], 'value': '"actionVersion"'}, {'id': '113', 'type': 'block', 'children': ['114']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'actionVersion'}, {'id': '117', 'type': 'call', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'string', 'children': [], 'value': '"actionVersion"'}, {'id': '123', 'type': 'if_statement', 'children': ['124', '130']}; {'id': '124', 'type': 'call', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'string', 'children': [], 'value': '"action"'}; {'id': '130', 'type': 'block', 'children': ['131']}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'assignment', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '134', 'type': 'call', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'string', 'children': [], 'value': '"action"'}; {'id': '140', 'type': 'if_statement', 'children': ['141', '147']}, {'id': '141', 'type': 'call', 'children': ['142', '145']}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}, {'id': '145', 'type': 'argument_list', 'children': ['146']}; {'id': '146', 'type': 'string', 'children': [], 'value': '"ignoreReason"'}, {'id': '147', 'type': 'block', 'children': ['148']}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'ignoreReason'}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'string', 'children': [], 'value': '"ignoreReason"'}, {'id': '157', 'type': 'if_statement', 'children': ['158', '164']}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'string', 'children': [], 'value': '"status"'}; {'id': '164', 'type': 'block', 'children': ['165']}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '168', 'type': 'call', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}; {'id': '172', 'type': 'argument_list', 'children': ['173']}, {'id': '173', 'type': 'string', 'children': [], 'value': '"status"'}; {'id': '174', 'type': 'if_statement', 'children': ['175', '181']}, {'id': '175', 'type': 'call', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'hasAttribute'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'string', 'children': [], 'value': '"excludeList"'}, {'id': '181', 'type': 'block', 'children': ['182']}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'excludeList'}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'moConfigNode'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'getAttribute'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'string', 'children': [], 'value': '"excludeList"'}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'moConfig'}; {'id': '194', 'type': 'None', 'children': []}, {'id': '195', 'type': 'if_statement', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'classId'}, {'id': '197', 'type': 'block', 'children': ['198']}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'assignment', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'moConfig'}, {'id': '201', 'type': 'call', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'SyncMoConfig'}, {'id': '203', 'type': 'argument_list', 'children': ['204', '205', '206', '207', '208', '209', '210', '211']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'classId'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'noun'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'version'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'actionVersion'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'ignoreReason'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'excludeList'}; {'id': '212', 'type': 'if_statement', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'moConfig'}; {'id': '214', 'type': 'block', 'children': ['215']}, {'id': '215', 'type': 'if_statement', 'children': ['216', '219', '226']}; {'id': '216', 'type': 'comparison_operator', 'children': ['217', '218'], 'value': 'in'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'classId'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'moConfigMap'}, {'id': '219', 'type': 'block', 'children': ['220']}; {'id': '220', 'type': 'expression_statement', 'children': ['221']}, {'id': '221', 'type': 'assignment', 'children': ['222', '225']}; {'id': '222', 'type': 'subscript', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'moConfigMap'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'classId'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'moConfig'}; {'id': '226', 'type': 'else_clause', 'children': ['227']}, {'id': '227', 'type': 'block', 'children': ['228', '232', '239']}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'assignment', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'moConfigList'}, {'id': '231', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '232', 'type': 'expression_statement', 'children': ['233']}, {'id': '233', 'type': 'call', 'children': ['234', '237']}; {'id': '234', 'type': 'attribute', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'moConfigList'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '237', 'type': 'argument_list', 'children': ['238']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'moConfig'}, {'id': '239', 'type': 'expression_statement', 'children': ['240']}; {'id': '240', 'type': 'assignment', 'children': ['241', '244']}, {'id': '241', 'type': 'subscript', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'moConfigMap'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'classId'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'moConfigList'}, {'id': '245', 'type': 'return_statement', 'children': ['246']}

def GetSyncMoConfig(ConfigDoc): moConfigMap = {} configList = ConfigDoc.getElementsByTagName("mo") for moConfigNode in configList: classId = None noun = None version = None actionVersion = None action = None ignoreReason = None status = None excludeList = None if moConfigNode.hasAttribute("classid"): classId = moConfigNode.getAttribute("classid") if moConfigNode.hasAttribute("noun"): noun = moConfigNode.getAttribute("noun") if moConfigNode.hasAttribute("version"): version = moConfigNode.getAttribute("version") if moConfigNode.hasAttribute("actionVersion"): actionVersion = moConfigNode.getAttribute("actionVersion") if moConfigNode.hasAttribute("action"): action = moConfigNode.getAttribute("action") if moConfigNode.hasAttribute("ignoreReason"): ignoreReason = moConfigNode.getAttribute("ignoreReason") if moConfigNode.hasAttribute("status"): status = moConfigNode.getAttribute("status") if moConfigNode.hasAttribute("excludeList"): excludeList = moConfigNode.getAttribute("excludeList") moConfig = None if classId: moConfig = SyncMoConfig(classId, noun, version, actionVersion, action, ignoreReason, status, excludeList) if moConfig: if classId in moConfigMap: moConfigMap[classId] = moConfig else: moConfigList = [] moConfigList.append(moConfig) moConfigMap[classId] = moConfigList return moConfigMap

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '27']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'duration'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'now'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'precision'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'pad'}, {'id': '13', 'type': 'string', 'children': [], 'value': "', '"}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'words'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'justnow'}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'timedelta'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'seconds'}; {'id': '26', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '27', 'type': 'block', 'children': ['28', '30', '41', '48', '63', '84', '100']}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'string', 'children': [], 'value': '\'\'\'\n Time delta compared to ``t``. You can override ``now`` to specify what time\n to compare to.\n :param t: timestamp, :class:`datetime.date` or :class:`datetime.datetime`\n object\n :param now: default ``None``, optionally a :class:`datetime.datetime`\n object\n :param precision: default ``1``, number of fragments to return\n :param words: default ``None``, allow words like "yesterday", if set to\n ``None`` this will be enabled if ``precision`` is set to\n ``1``\n :param justnow: default ``datetime.timedelta(seconds=10)``,\n :class:`datetime.timedelta` object passed to :func:`delta`\n representing tolerance for considering argument ``t`` as\n meaning \'just now\'\n >>> import time\n >>> from datetime import datetime\n >>> print(duration(time.time() + 1))\n just now\n >>> print(duration(time.time() + 11))\n 11 seconds from now\n >>> print(duration(time.time() - 1))\n just now\n >>> print(duration(time.time() - 11))\n 11 seconds ago\n >>> print(duration(time.time() - 3601))\n an hour ago\n >>> print(duration(time.time() - 7201))\n 2 hours ago\n >>> print(duration(time.time() - 1234567))\n 2 weeks ago\n >>> print(duration(time.time() + 7200, precision=1))\n 2 hours from now\n >>> print(duration(time.time() - 1234567, precision=3))\n 2 weeks, 6 hours, 56 minutes ago\n >>> print(duration(datetime(2014, 9, 8), now=datetime(2014, 9, 9)))\n yesterday\n >>> print(duration(datetime(2014, 9, 7, 23), now=datetime(2014, 9, 9)))\n 1 day ago\n >>> print(duration(datetime(2014, 9, 10), now=datetime(2014, 9, 9)))\n tomorrow\n >>> print(duration(datetime(2014, 9, 11, 1), now=datetime(2014, 9, 9, 23)))\n 1 day from now\n \'\'\''}; {'id': '30', 'type': 'if_statement', 'children': ['31', '34']}, {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'is'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'words'}, {'id': '33', 'type': 'None', 'children': []}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'words'}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': '=='}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'precision'}; {'id': '40', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 't1'}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': '_to_datetime'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 't2'}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_to_datetime'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'boolean_operator', 'children': ['55', '56'], 'value': 'or'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'now'}; {'id': '56', 'type': 'call', 'children': ['57', '62']}, {'id': '57', 'type': 'attribute', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'datetime'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'now'}; {'id': '62', 'type': 'argument_list', 'children': []}, {'id': '63', 'type': 'if_statement', 'children': ['64', '67', '75']}; {'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': '<'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 't1'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 't2'}, {'id': '67', 'type': 'block', 'children': ['68']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'string', 'children': [], 'value': "'%s ago'"}, {'id': '75', 'type': 'else_clause', 'children': ['76']}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'string', 'children': [], 'value': "'%s from now'"}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '89']}; {'id': '86', 'type': 'pattern_list', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'remains'}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'delta'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '93', '94', '97']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 't1'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 't2'}; {'id': '94', 'type': 'keyword_argument', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'words'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'words'}, {'id': '97', 'type': 'keyword_argument', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'justnow'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'justnow'}; {'id': '100', 'type': 'if_statement', 'children': ['101', '124', '127', '167']}, {'id': '101', 'type': 'comparison_operator', 'children': ['102', '103'], 'value': 'in'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '103', 'type': 'tuple', 'children': ['104', '108', '112', '116', '120']}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'string', 'children': [], 'value': "'just now'"}; {'id': '108', 'type': 'call', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'string', 'children': [], 'value': "'yesterday'"}; {'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'string', 'children': [], 'value': "'tomorrow'"}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'string', 'children': [], 'value': "'last week'"}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'string', 'children': [], 'value': "'next week'"}; {'id': '124', 'type': 'block', 'children': ['125']}, {'id': '125', 'type': 'return_statement', 'children': ['126']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '127', 'type': 'elif_clause', 'children': ['128', '133']}; {'id': '128', 'type': 'boolean_operator', 'children': ['129', '132'], 'value': 'and'}, {'id': '129', 'type': 'comparison_operator', 'children': ['130', '131'], 'value': '>'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'precision'}, {'id': '131', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'remains'}, {'id': '133', 'type': 'block', 'children': ['134', '147']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'assignment', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 't3'}, {'id': '137', 'type': 'binary_operator', 'children': ['138', '139'], 'value': '-'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 't2'}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'timedelta'}, {'id': '143', 'type': 'argument_list', 'children': ['144']}; {'id': '144', 'type': 'keyword_argument', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'seconds'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'remains'}, {'id': '147', 'type': 'return_statement', 'children': ['148']}; {'id': '148', 'type': 'call', 'children': ['149', '152']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'pad'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '152', 'type': 'argument_list', 'children': ['153']}, {'id': '153', 'type': 'list', 'children': ['154', '155'], 'value': '[\n result,\n duration(t2, t3, precision - 1, pad, words=False),\n ]'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'duration'}, {'id': '157', 'type': 'argument_list', 'children': ['158', '159', '160', '163', '164']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 't2'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 't3'}; {'id': '160', 'type': 'binary_operator', 'children': ['161', '162'], 'value': '-'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'precision'}; {'id': '162', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'pad'}; {'id': '164', 'type': 'keyword_argument', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'words'}; {'id': '166', 'type': 'False', 'children': []}, {'id': '167', 'type': 'else_clause', 'children': ['168']}; {'id': '168', 'type': 'block', 'children': ['169']}, {'id': '169', 'type': 'return_statement', 'children': ['170']}; {'id': '170', 'type': 'binary_operator', 'children': ['171', '172'], 'value': '%'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '172', 'type': 'tuple', 'children': ['173']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'result'}

def duration(t, now=None, precision=1, pad=', ', words=None, justnow=datetime.timedelta(seconds=10)): ''' Time delta compared to ``t``. You can override ``now`` to specify what time to compare to. :param t: timestamp, :class:`datetime.date` or :class:`datetime.datetime` object :param now: default ``None``, optionally a :class:`datetime.datetime` object :param precision: default ``1``, number of fragments to return :param words: default ``None``, allow words like "yesterday", if set to ``None`` this will be enabled if ``precision`` is set to ``1`` :param justnow: default ``datetime.timedelta(seconds=10)``, :class:`datetime.timedelta` object passed to :func:`delta` representing tolerance for considering argument ``t`` as meaning 'just now' >>> import time >>> from datetime import datetime >>> print(duration(time.time() + 1)) just now >>> print(duration(time.time() + 11)) 11 seconds from now >>> print(duration(time.time() - 1)) just now >>> print(duration(time.time() - 11)) 11 seconds ago >>> print(duration(time.time() - 3601)) an hour ago >>> print(duration(time.time() - 7201)) 2 hours ago >>> print(duration(time.time() - 1234567)) 2 weeks ago >>> print(duration(time.time() + 7200, precision=1)) 2 hours from now >>> print(duration(time.time() - 1234567, precision=3)) 2 weeks, 6 hours, 56 minutes ago >>> print(duration(datetime(2014, 9, 8), now=datetime(2014, 9, 9))) yesterday >>> print(duration(datetime(2014, 9, 7, 23), now=datetime(2014, 9, 9))) 1 day ago >>> print(duration(datetime(2014, 9, 10), now=datetime(2014, 9, 9))) tomorrow >>> print(duration(datetime(2014, 9, 11, 1), now=datetime(2014, 9, 9, 23))) 1 day from now ''' if words is None: words = precision == 1 t1 = _to_datetime(t) t2 = _to_datetime(now or datetime.datetime.now()) if t1 < t2: format = _('%s ago') else: format = _('%s from now') result, remains = delta(t1, t2, words=words, justnow=justnow) if result in ( _('just now'), _('yesterday'), _('tomorrow'), _('last week'), _('next week'), ): return result elif precision > 1 and remains: t3 = t2 - datetime.timedelta(seconds=remains) return pad.join([ result, duration(t2, t3, precision - 1, pad, words=False), ]) else: return format % (result,)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'search'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'query_string'}; {'id': '6', 'type': 'block', 'children': ['7', '15', '23', '29']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'create_query'}; {'id': '14', 'type': 'argument_list', 'children': []}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'QueryParser'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'query_string'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'parser'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'parse'}; {'id': '28', 'type': 'argument_list', 'children': []}, {'id': '29', 'type': 'return_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'query'}

def search(self, query_string): query = self.create_query() parser = QueryParser(query_string, query) parser.parse() return self.query(query)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'wrap_error'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'renderer_context'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'keys_are_fields'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'issue_is_title'}, {'id': '9', 'type': 'block', 'children': ['10', '20', '31', '35', '127', '135', '141']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'renderer_context'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'string', 'children': [], 'value': '"response"'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'status_code'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'boolean_operator', 'children': ['27', '28'], 'value': 'and'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'status_code'}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '34', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '35', 'type': 'for_statement', 'children': ['36', '39', '44']}; {'id': '36', 'type': 'pattern_list', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'issues'}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '43', 'type': 'argument_list', 'children': []}; {'id': '44', 'type': 'block', 'children': ['45', '59']}, {'id': '45', 'type': 'if_statement', 'children': ['46', '53']}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'issues'}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'six'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'string_types'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'issues'}, {'id': '57', 'type': 'list', 'children': ['58'], 'value': '[issues]'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'issues'}, {'id': '59', 'type': 'for_statement', 'children': ['60', '61', '62']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'issue'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'issues'}; {'id': '62', 'type': 'block', 'children': ['63', '71', '77', '94', '120']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'dict_class'}; {'id': '70', 'type': 'argument_list', 'children': []}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '76']}, {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '75', 'type': 'string', 'children': [], 'value': '"status"'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'status_code'}, {'id': '77', 'type': 'if_statement', 'children': ['78', '79', '86']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'issue_is_title'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '85']}; {'id': '82', 'type': 'subscript', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '84', 'type': 'string', 'children': [], 'value': '"title"'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'issue'}; {'id': '86', 'type': 'else_clause', 'children': ['87']}, {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '93']}; {'id': '90', 'type': 'subscript', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '92', 'type': 'string', 'children': [], 'value': '"detail"'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'issue'}; {'id': '94', 'type': 'if_statement', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'keys_are_fields'}; {'id': '96', 'type': 'block', 'children': ['97']}, {'id': '97', 'type': 'if_statement', 'children': ['98', '103', '110']}; {'id': '98', 'type': 'comparison_operator', 'children': ['99', '100'], 'value': 'in'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '100', 'type': 'tuple', 'children': ['101', '102']}, {'id': '101', 'type': 'string', 'children': [], 'value': "'non_field_errors'"}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'NON_FIELD_ERRORS'}, {'id': '103', 'type': 'block', 'children': ['104']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '109']}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '108', 'type': 'string', 'children': [], 'value': '"path"'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'/-'"}; {'id': '110', 'type': 'else_clause', 'children': ['111']}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '117']}; {'id': '114', 'type': 'subscript', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '116', 'type': 'string', 'children': [], 'value': '"path"'}, {'id': '117', 'type': 'binary_operator', 'children': ['118', '119'], 'value': '+'}; {'id': '118', 'type': 'string', 'children': [], 'value': "'/'"}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'wrapper'}; {'id': '130', 'type': 'call', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'dict_class'}; {'id': '134', 'type': 'argument_list', 'children': []}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'assignment', 'children': ['137', '140']}, {'id': '137', 'type': 'subscript', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'wrapper'}, {'id': '139', 'type': 'string', 'children': [], 'value': '"errors"'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'errors'}, {'id': '141', 'type': 'return_statement', 'children': ['142']}

def wrap_error( self, data, renderer_context, keys_are_fields, issue_is_title): response = renderer_context.get("response", None) status_code = str(response and response.status_code) errors = [] for field, issues in data.items(): if isinstance(issues, six.string_types): issues = [issues] for issue in issues: error = self.dict_class() error["status"] = status_code if issue_is_title: error["title"] = issue else: error["detail"] = issue if keys_are_fields: if field in ('non_field_errors', NON_FIELD_ERRORS): error["path"] = '/-' else: error["path"] = '/' + field errors.append(error) wrapper = self.dict_class() wrapper["errors"] = errors return wrapper

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'lunr'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'documents'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'languages'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '115', '122', '150', '186']}, {'id': '11', 'type': 'if_statement', 'children': ['12', '19', '87']}; {'id': '12', 'type': 'boolean_operator', 'children': ['13', '16'], 'value': 'and'}, {'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': 'is'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'languages'}, {'id': '15', 'type': 'None', 'children': []}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'lang'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'LANGUAGE_SUPPORT'}, {'id': '19', 'type': 'block', 'children': ['20', '32', '46', '78']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '26']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'languages'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'basestring'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'languages'}; {'id': '30', 'type': 'list', 'children': ['31'], 'value': '[languages]'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'languages'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'unsupported_languages'}, {'id': '35', 'type': 'binary_operator', 'children': ['36', '40'], 'value': '-'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'languages'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'lang'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'SUPPORTED_LANGUAGES'}; {'id': '46', 'type': 'if_statement', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'unsupported_languages'}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'raise_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '59']}; {'id': '54', 'type': 'attribute', 'children': ['55', '58']}, {'id': '55', 'type': 'concatenated_string', 'children': ['56', '57']}; {'id': '56', 'type': 'string', 'children': [], 'value': '"The specified languages {} are not supported, "'}, {'id': '57', 'type': 'string', 'children': [], 'value': '"please choose one of {}"'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '66']}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'string', 'children': [], 'value': '", "'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'unsupported_languages'}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'string', 'children': [], 'value': '", "'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '77']}; {'id': '72', 'type': 'attribute', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'lang'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'SUPPORTED_LANGUAGES'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '77', 'type': 'argument_list', 'children': []}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'builder'}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'lang'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'get_nltk_builder'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'languages'}, {'id': '87', 'type': 'else_clause', 'children': ['88']}; {'id': '88', 'type': 'block', 'children': ['89', '95', '106']}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'builder'}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'Builder'}; {'id': '94', 'type': 'argument_list', 'children': []}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'call', 'children': ['97', '102']}, {'id': '97', 'type': 'attribute', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'builder'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'pipeline'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '102', 'type': 'argument_list', 'children': ['103', '104', '105']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'trimmer'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'stop_word_filter'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'stemmer'}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '113']}; {'id': '108', 'type': 'attribute', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'builder'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'search_pipeline'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'stemmer'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'builder'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'ref'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'ref'}; {'id': '122', 'type': 'for_statement', 'children': ['123', '124', '125']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'if_statement', 'children': ['127', '132', '141']}, {'id': '127', 'type': 'call', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '129', 'type': 'argument_list', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '132', 'type': 'block', 'children': ['133']}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'call', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'builder'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'dictionary_splat', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '141', 'type': 'else_clause', 'children': ['142']}; {'id': '142', 'type': 'block', 'children': ['143']}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'builder'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '150', 'type': 'for_statement', 'children': ['151', '152', '153']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'document'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'documents'}, {'id': '153', 'type': 'block', 'children': ['154']}; {'id': '154', 'type': 'if_statement', 'children': ['155', '162', '177']}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '157', 'type': 'argument_list', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'document'}, {'id': '159', 'type': 'tuple', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '162', 'type': 'block', 'children': ['163']}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'call', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'builder'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '168', 'type': 'argument_list', 'children': ['169', '172']}, {'id': '169', 'type': 'subscript', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'document'}, {'id': '171', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '172', 'type': 'keyword_argument', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'attributes'}; {'id': '174', 'type': 'subscript', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'document'}; {'id': '176', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '177', 'type': 'else_clause', 'children': ['178']}; {'id': '178', 'type': 'block', 'children': ['179']}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'builder'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'document'}; {'id': '186', 'type': 'return_statement', 'children': ['187']}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'builder'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'build'}, {'id': '191', 'type': 'argument_list', 'children': []}

def lunr(ref, fields, documents, languages=None): if languages is not None and lang.LANGUAGE_SUPPORT: if isinstance(languages, basestring): languages = [languages] unsupported_languages = set(languages) - set(lang.SUPPORTED_LANGUAGES) if unsupported_languages: raise RuntimeError( "The specified languages {} are not supported, " "please choose one of {}".format( ", ".join(unsupported_languages), ", ".join(lang.SUPPORTED_LANGUAGES.keys()), ) ) builder = lang.get_nltk_builder(languages) else: builder = Builder() builder.pipeline.add(trimmer, stop_word_filter, stemmer) builder.search_pipeline.add(stemmer) builder.ref(ref) for field in fields: if isinstance(field, dict): builder.field(**field) else: builder.field(field) for document in documents: if isinstance(document, (tuple, list)): builder.add(document[0], attributes=document[1]) else: builder.add(document) return builder.build()

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'build_trie'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'pattern_filename'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'pattern_format'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'encoding'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'on_word_boundaries'}; {'id': '8', 'type': 'block', 'children': ['9', '11', '15', '34', '52', '62', '66', '357', '370']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'string', 'children': [], 'value': "'''\n Constructs a finite state machine for performing string rewriting.\n Arguments:\n - `pattern_filename`:\n - `pattern_format`:\n - `encoding`:\n - `on_word_boundaries`:\n '''"}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'boundaries'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'on_word_boundaries'}, {'id': '15', 'type': 'if_statement', 'children': ['16', '22']}; {'id': '16', 'type': 'boolean_operator', 'children': ['17', '20'], 'value': 'or'}, {'id': '17', 'type': 'comparison_operator', 'children': ['18', '19'], 'value': '=='}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'pattern_format'}, {'id': '19', 'type': 'string', 'children': [], 'value': "'auto'"}; {'id': '20', 'type': 'not_operator', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'on_word_boundaries'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '28']}, {'id': '25', 'type': 'pattern_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'tsv'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'boundaries'}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'detect_pattern_format'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32', '33']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'pattern_filename'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'encoding'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'on_word_boundaries'}; {'id': '34', 'type': 'if_statement', 'children': ['35', '38']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': '=='}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'pattern_format'}, {'id': '37', 'type': 'string', 'children': [], 'value': "'auto'"}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'if_statement', 'children': ['40', '41', '46']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'tsv'}, {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'pattern_format'}, {'id': '45', 'type': 'string', 'children': [], 'value': "'tsv'"}; {'id': '46', 'type': 'else_clause', 'children': ['47']}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'pattern_format'}, {'id': '51', 'type': 'string', 'children': [], 'value': "'sed'"}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'trie'}, {'id': '55', 'type': 'call', 'children': ['56', '61']}; {'id': '56', 'type': 'attribute', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'fsed'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'ahocorasick'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'AhoCorasickTrie'}, {'id': '61', 'type': 'argument_list', 'children': []}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'num_candidates'}, {'id': '65', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '66', 'type': 'with_statement', 'children': ['67', '76']}, {'id': '67', 'type': 'with_clause', 'children': ['68']}; {'id': '68', 'type': 'with_item', 'children': ['69']}, {'id': '69', 'type': 'as_pattern', 'children': ['70', '74']}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'open_file'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'pattern_filename'}; {'id': '74', 'type': 'as_pattern_target', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'pattern_file'}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'for_statement', 'children': ['78', '81', '85']}; {'id': '78', 'type': 'pattern_list', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'lineno'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '81', 'type': 'call', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'pattern_file'}, {'id': '85', 'type': 'block', 'children': ['86', '100', '109', '290', '294', '322', '329', '336', '351']}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'assignment', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '89', 'type': 'call', 'children': ['90', '98']}; {'id': '90', 'type': 'attribute', 'children': ['91', '97']}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'encoding'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'rstrip'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '100', 'type': 'if_statement', 'children': ['101', '107']}, {'id': '101', 'type': 'not_operator', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '106', 'type': 'argument_list', 'children': []}, {'id': '107', 'type': 'block', 'children': ['108']}; {'id': '108', 'type': 'continue_statement', 'children': []}, {'id': '109', 'type': 'if_statement', 'children': ['110', '113', '154']}; {'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': '=='}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'pattern_format'}; {'id': '112', 'type': 'string', 'children': [], 'value': "'tsv'"}, {'id': '113', 'type': 'block', 'children': ['114', '123', '148']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '117', 'type': 'call', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'string', 'children': [], 'value': "'\\t'"}, {'id': '123', 'type': 'if_statement', 'children': ['124', '130']}; {'id': '124', 'type': 'comparison_operator', 'children': ['125', '129'], 'value': '!='}, {'id': '125', 'type': 'call', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '129', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '130', 'type': 'block', 'children': ['131', '147']}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'call', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'warning'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '144']}; {'id': '138', 'type': 'attribute', 'children': ['139', '143']}, {'id': '139', 'type': 'parenthesized_expression', 'children': ['140'], 'value': '()'}; {'id': '140', 'type': 'concatenated_string', 'children': ['141', '142']}, {'id': '141', 'type': 'string', 'children': [], 'value': "'skipping line {} of pattern file (not '"}; {'id': '142', 'type': 'string', 'children': [], 'value': "'in tab-separated format): {}'"}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '144', 'type': 'argument_list', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'lineno'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '147', 'type': 'continue_statement', 'children': []}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '153']}; {'id': '150', 'type': 'pattern_list', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'after'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '154', 'type': 'elif_clause', 'children': ['155', '158']}, {'id': '155', 'type': 'comparison_operator', 'children': ['156', '157'], 'value': '=='}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'pattern_format'}, {'id': '157', 'type': 'string', 'children': [], 'value': "'sed'"}; {'id': '158', 'type': 'block', 'children': ['159', '165', '173', '264']}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'assignment', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '162', 'type': 'assignment', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'after'}; {'id': '164', 'type': 'None', 'children': []}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '168', 'type': 'call', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'lstrip'}; {'id': '172', 'type': 'argument_list', 'children': []}, {'id': '173', 'type': 'if_statement', 'children': ['174', '179']}; {'id': '174', 'type': 'comparison_operator', 'children': ['175', '178'], 'value': '=='}, {'id': '175', 'type': 'subscript', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '177', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '178', 'type': 'string', 'children': [], 'value': "'s'"}, {'id': '179', 'type': 'block', 'children': ['180', '186', '197', '212']}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'assignment', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'delim'}, {'id': '183', 'type': 'subscript', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '185', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '186', 'type': 'if_statement', 'children': ['187', '190']}, {'id': '187', 'type': 'comparison_operator', 'children': ['188', '189'], 'value': 'in'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'delim'}, {'id': '189', 'type': 'string', 'children': [], 'value': "'.^$*+?[](){}|\\\\'"}; {'id': '190', 'type': 'block', 'children': ['191']}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'delim'}; {'id': '194', 'type': 'binary_operator', 'children': ['195', '196'], 'value': '+'}, {'id': '195', 'type': 'string', 'children': [], 'value': "'\\\\'"}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'delim'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '200', 'type': 'call', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '204', 'type': 'argument_list', 'children': ['205', '211']}, {'id': '205', 'type': 'call', 'children': ['206', '209']}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'string', 'children': [], 'value': "r'(?<!\\\\){}'"}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'delim'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '212', 'type': 'if_statement', 'children': ['213', '219']}, {'id': '213', 'type': 'comparison_operator', 'children': ['214', '218'], 'value': '=='}; {'id': '214', 'type': 'call', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '216', 'type': 'argument_list', 'children': ['217']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '218', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '219', 'type': 'block', 'children': ['220', '232', '248']}; {'id': '220', 'type': 'expression_statement', 'children': ['221']}, {'id': '221', 'type': 'assignment', 'children': ['222', '225']}; {'id': '222', 'type': 'pattern_list', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'after'}, {'id': '225', 'type': 'expression_list', 'children': ['226', '229']}; {'id': '226', 'type': 'subscript', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '228', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '229', 'type': 'subscript', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '231', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '232', 'type': 'expression_statement', 'children': ['233']}, {'id': '233', 'type': 'assignment', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'before'}, {'id': '235', 'type': 'call', 'children': ['236', '239']}; {'id': '236', 'type': 'attribute', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'sub'}, {'id': '239', 'type': 'argument_list', 'children': ['240', '246', '247']}; {'id': '240', 'type': 'call', 'children': ['241', '244']}, {'id': '241', 'type': 'attribute', 'children': ['242', '243']}; {'id': '242', 'type': 'string', 'children': [], 'value': "r'(?<!\\\\)\\\\{}'"}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '244', 'type': 'argument_list', 'children': ['245']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'delim'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'delim'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '248', 'type': 'expression_statement', 'children': ['249']}, {'id': '249', 'type': 'assignment', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'after'}, {'id': '251', 'type': 'call', 'children': ['252', '255']}; {'id': '252', 'type': 'attribute', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'sub'}, {'id': '255', 'type': 'argument_list', 'children': ['256', '262', '263']}; {'id': '256', 'type': 'call', 'children': ['257', '260']}, {'id': '257', 'type': 'attribute', 'children': ['258', '259']}; {'id': '258', 'type': 'string', 'children': [], 'value': "r'(?<!\\\\)\\\\{}'"}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '260', 'type': 'argument_list', 'children': ['261']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'delim'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'delim'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'after'}; {'id': '264', 'type': 'if_statement', 'children': ['265', '272']}, {'id': '265', 'type': 'boolean_operator', 'children': ['266', '269'], 'value': 'or'}; {'id': '266', 'type': 'comparison_operator', 'children': ['267', '268'], 'value': 'is'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '268', 'type': 'None', 'children': []}, {'id': '269', 'type': 'comparison_operator', 'children': ['270', '271'], 'value': 'is'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'after'}, {'id': '271', 'type': 'None', 'children': []}; {'id': '272', 'type': 'block', 'children': ['273', '289']}, {'id': '273', 'type': 'expression_statement', 'children': ['274']}; {'id': '274', 'type': 'call', 'children': ['275', '278']}, {'id': '275', 'type': 'attribute', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'warning'}; {'id': '278', 'type': 'argument_list', 'children': ['279']}, {'id': '279', 'type': 'call', 'children': ['280', '286']}; {'id': '280', 'type': 'attribute', 'children': ['281', '285']}, {'id': '281', 'type': 'parenthesized_expression', 'children': ['282'], 'value': '()'}; {'id': '282', 'type': 'concatenated_string', 'children': ['283', '284']}, {'id': '283', 'type': 'string', 'children': [], 'value': "'skipping line {} of pattern file (not '"}; {'id': '284', 'type': 'string', 'children': [], 'value': "'in sed format): {}'"}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '286', 'type': 'argument_list', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'lineno'}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '289', 'type': 'continue_statement', 'children': []}; {'id': '290', 'type': 'expression_statement', 'children': ['291']}, {'id': '291', 'type': 'augmented_assignment', 'children': ['292', '293'], 'value': '+='}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'num_candidates'}, {'id': '293', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '294', 'type': 'if_statement', 'children': ['295', '304']}, {'id': '295', 'type': 'boolean_operator', 'children': ['296', '297'], 'value': 'and'}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'on_word_boundaries'}, {'id': '297', 'type': 'comparison_operator', 'children': ['298', '299'], 'value': '!='}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'before'}, {'id': '299', 'type': 'call', 'children': ['300', '303']}; {'id': '300', 'type': 'attribute', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '303', 'type': 'argument_list', 'children': []}; {'id': '304', 'type': 'block', 'children': ['305']}, {'id': '305', 'type': 'expression_statement', 'children': ['306']}; {'id': '306', 'type': 'call', 'children': ['307', '310']}, {'id': '307', 'type': 'attribute', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'warning'}; {'id': '310', 'type': 'argument_list', 'children': ['311']}, {'id': '311', 'type': 'call', 'children': ['312', '319']}; 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def build_trie(pattern_filename, pattern_format, encoding, on_word_boundaries): ''' Constructs a finite state machine for performing string rewriting. Arguments: - `pattern_filename`: - `pattern_format`: - `encoding`: - `on_word_boundaries`: ''' boundaries = on_word_boundaries if pattern_format == 'auto' or not on_word_boundaries: tsv, boundaries = detect_pattern_format(pattern_filename, encoding, on_word_boundaries) if pattern_format == 'auto': if tsv: pattern_format = 'tsv' else: pattern_format = 'sed' trie = fsed.ahocorasick.AhoCorasickTrie() num_candidates = 0 with open_file(pattern_filename) as pattern_file: for lineno, line in enumerate(pattern_file): line = line.decode(encoding).rstrip('\n') if not line.strip(): continue if pattern_format == 'tsv': fields = line.split('\t') if len(fields) != 2: LOGGER.warning(('skipping line {} of pattern file (not ' 'in tab-separated format): {}').format(lineno, line)) continue before, after = fields elif pattern_format == 'sed': before = after = None line = line.lstrip() if line[0] == 's': delim = line[1] if delim in '.^$*+?[](){}|\\': delim = '\\' + delim fields = re.split(r'(?<!\\){}'.format(delim), line) if len(fields) == 4: before, after = fields[1], fields[2] before = re.sub(r'(?<!\\)\\{}'.format(delim), delim, before) after = re.sub(r'(?<!\\)\\{}'.format(delim), delim, after) if before is None or after is None: LOGGER.warning(('skipping line {} of pattern file (not ' 'in sed format): {}').format(lineno, line)) continue num_candidates += 1 if on_word_boundaries and before != before.strip(): LOGGER.warning(('before pattern on line {} padded whitespace; ' 'this may interact strangely with the --words ' 'option: {}').format(lineno, line)) before = sub_escapes(before) after = sub_escapes(after) if boundaries: before = fsed.ahocorasick.boundary_transform(before, on_word_boundaries) trie[before] = after LOGGER.info('{} patterns loaded from {}'.format(num_candidates, pattern_filename)) return trie, boundaries

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{'id': '224', 'type': 'identifier', 'children': [], 'value': 'parser'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'add_argument'}; {'id': '226', 'type': 'argument_list', 'children': ['227', '228', '229']}, {'id': '227', 'type': 'string', 'children': [], 'value': '"-p"'}; {'id': '228', 'type': 'string', 'children': [], 'value': '"--pretty"'}, {'id': '229', 'type': 'keyword_argument', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '231', 'type': 'string', 'children': [], 'value': '"store_true"'}; {'id': '232', 'type': 'return_statement', 'children': ['233']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'parser'}

def make_parser(add_help=True, exclude_args=None): if exclude_args is None: exclude_args = [] parser = argparse.ArgumentParser(add_help=add_help) parser.description = ("Filter, transform and export a list of JSON " "objects on stdin to JSON or CSV on stdout") if "--columns" not in exclude_args: parser.add_argument( "--columns", dest="columns_file", help="the JSON file specifying the columns to be output", ) if ("-i" not in exclude_args) and ("--input" not in exclude_args): parser.add_argument( "-i", "--input", help="read input from the given file instead of from stdin", dest='input_data', ) if ("-c" not in exclude_args) and ("--column" not in exclude_args): parser.add_argument("-c", "--column", action=ColumnsAction) if "--pattern" not in exclude_args: parser.add_argument("--pattern", action=ColumnsAction, nargs='+') if "--max-length" not in exclude_args: parser.add_argument("--max-length", action=ColumnsAction) if "--strip" not in exclude_args: parser.add_argument("--strip", nargs="?", action=ColumnsAction) if "--deduplicate" not in exclude_args: parser.add_argument("--deduplicate", nargs='?', action=ColumnsAction) if "--case-sensitive" not in exclude_args: parser.add_argument( "--case-sensitive", nargs='?', action=ColumnsAction) if "--unique" not in exclude_args: parser.add_argument("--unique", nargs="?", action=ColumnsAction) if ("-p" not in exclude_args) and ("--pretty" not in exclude_args): parser.add_argument("-p", "--pretty", action="store_true") return parser

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '6', 'type': 'None', 'children': []}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '21', '45', '70', '115', '165']}, {'id': '11', 'type': 'if_statement', 'children': ['12', '14']}; {'id': '12', 'type': 'not_operator', 'children': ['13']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '14', 'type': 'block', 'children': ['15']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'make_parser'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'try_statement', 'children': ['22', '32']}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'parsed_args'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'parser'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '32', 'type': 'except_clause', 'children': ['33', '37']}, {'id': '33', 'type': 'as_pattern', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'SystemExit'}, {'id': '35', 'type': 'as_pattern_target', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'raise_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'CommandLineExit'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'code'}, {'id': '45', 'type': 'try_statement', 'children': ['46', '53']}; {'id': '46', 'type': 'block', 'children': ['47']}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'parsed_args'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '53', 'type': 'except_clause', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'AttributeError'}, {'id': '55', 'type': 'block', 'children': ['56', '64']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'collections'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}, {'id': '63', 'type': 'argument_list', 'children': []}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'parsed_args'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '70', 'type': 'for_statement', 'children': ['71', '74', '79']}, {'id': '71', 'type': 'pattern_list', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'title'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'spec'}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '78', 'type': 'argument_list', 'children': []}, {'id': '79', 'type': 'block', 'children': ['80', '95']}; {'id': '80', 'type': 'if_statement', 'children': ['81', '84']}, {'id': '81', 'type': 'comparison_operator', 'children': ['82', '83'], 'value': 'not'}; {'id': '82', 'type': 'string', 'children': [], 'value': '"pattern"'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'spec'}; {'id': '84', 'type': 'block', 'children': ['85']}, {'id': '85', 'type': 'raise_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'ColumnWithoutPatternError'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'string', 'children': [], 'value': '\'Column "{0}" needs a pattern\''}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'title'}, {'id': '95', 'type': 'if_statement', 'children': ['96', '104']}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '103'], 'value': '=='}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'subscript', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'spec'}; {'id': '102', 'type': 'string', 'children': [], 'value': '"pattern"'}, {'id': '103', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '104', 'type': 'block', 'children': ['105']}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '110']}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'spec'}, {'id': '109', 'type': 'string', 'children': [], 'value': '"pattern"'}; {'id': '110', 'type': 'subscript', 'children': ['111', '114']}, {'id': '111', 'type': 'subscript', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'spec'}, {'id': '113', 'type': 'string', 'children': [], 'value': '"pattern"'}; {'id': '114', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '115', 'type': 'if_statement', 'children': ['116', '121', '127', '143', '161']}; {'id': '116', 'type': 'boolean_operator', 'children': ['117', '118'], 'value': 'and'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'parsed_args'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'columns_file'}, {'id': '121', 'type': 'block', 'children': ['122']}; {'id': '122', 'type': 'raise_statement', 'children': ['123']}, {'id': '123', 'type': 'call', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'ColumnsAndColumnsFileError'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'string', 'children': [], 'value': '"You can\'t use the --column and --columns options together (yet)"'}, {'id': '127', 'type': 'elif_clause', 'children': ['128', '134']}; {'id': '128', 'type': 'boolean_operator', 'children': ['129', '132'], 'value': 'and'}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'parsed_args'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'columns_file'}; {'id': '132', 'type': 'not_operator', 'children': ['133']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '134', 'type': 'block', 'children': ['135']}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'assignment', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'parsed_args'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'parsed_args'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'columns_file'}, {'id': '143', 'type': 'elif_clause', 'children': ['144', '153']}; {'id': '144', 'type': 'boolean_operator', 'children': ['145', '148'], 'value': 'and'}, {'id': '145', 'type': 'parenthesized_expression', 'children': ['146'], 'value': '()'}; {'id': '146', 'type': 'not_operator', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '148', 'type': 'parenthesized_expression', 'children': ['149'], 'value': '()'}, {'id': '149', 'type': 'not_operator', 'children': ['150']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'parsed_args'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'columns_file'}, {'id': '153', 'type': 'block', 'children': ['154']}; {'id': '154', 'type': 'raise_statement', 'children': ['155']}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'NoColumnsError'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'concatenated_string', 'children': ['159', '160']}, {'id': '159', 'type': 'string', 'children': [], 'value': '"You must give either a --columns or at least one -c/--column "'}; {'id': '160', 'type': 'string', 'children': [], 'value': '"argument"'}, {'id': '161', 'type': 'else_clause', 'children': ['162']}; {'id': '162', 'type': 'block', 'children': ['163']}, {'id': '163', 'type': 'assert_statement', 'children': ['164']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '165', 'type': 'return_statement', 'children': ['166']}

def parse(parser=None, args=None): if not parser: parser = make_parser() try: parsed_args = parser.parse_args(args) except SystemExit as err: raise CommandLineExit(err.code) try: columns = parsed_args.columns except AttributeError: columns = collections.OrderedDict() parsed_args.columns = columns for title, spec in columns.items(): if "pattern" not in spec: raise ColumnWithoutPatternError( 'Column "{0}" needs a pattern'.format(title)) if len(spec["pattern"]) == 1: spec["pattern"] = spec["pattern"][0] if columns and parsed_args.columns_file: raise ColumnsAndColumnsFileError( "You can't use the --column and --columns options together (yet)") elif parsed_args.columns_file and not columns: parsed_args.columns = parsed_args.columns_file elif (not columns) and (not parsed_args.columns_file): raise NoColumnsError( "You must give either a --columns or at least one -c/--column " "argument") else: assert columns return parsed_args

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read_value'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'ftype'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'prompt'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'minval'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'maxval'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'allowed_single_chars'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'question_mark'}; {'id': '20', 'type': 'True', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '26', '39', '76', '113', '178', '182', '391']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'if_statement', 'children': ['27', '28', '33']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'question_mark'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'cquestion_mark'}; {'id': '32', 'type': 'string', 'children': [], 'value': "' ? '"}, {'id': '33', 'type': 'else_clause', 'children': ['34']}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'cquestion_mark'}; {'id': '38', 'type': 'string', 'children': [], 'value': "''"}, {'id': '39', 'type': 'if_statement', 'children': ['40', '43', '70']}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '42'], 'value': 'is'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'minval'}; {'id': '42', 'type': 'None', 'children': []}, {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'try_statement', 'children': ['45', '53']}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'iminval'}, {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'ftype'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'minval'}, {'id': '53', 'type': 'except_clause', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '55', 'type': 'block', 'children': ['56']}; {'id': '56', 'type': 'raise_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'binary_operator', 'children': ['61', '69'], 'value': '+'}, {'id': '61', 'type': 'binary_operator', 'children': ['62', '68'], 'value': '+'}; {'id': '62', 'type': 'binary_operator', 'children': ['63', '64'], 'value': '+'}, {'id': '63', 'type': 'string', 'children': [], 'value': '"\'"'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'minval'}; {'id': '68', 'type': 'string', 'children': [], 'value': '"\' cannot "'}, {'id': '69', 'type': 'string', 'children': [], 'value': '"be used as an minval in readi()"'}; {'id': '70', 'type': 'else_clause', 'children': ['71']}, {'id': '71', 'type': 'block', 'children': ['72']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'iminval'}, {'id': '75', 'type': 'None', 'children': []}; {'id': '76', 'type': 'if_statement', 'children': ['77', '80', '107']}, {'id': '77', 'type': 'comparison_operator', 'children': ['78', '79'], 'value': 'is'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'maxval'}, {'id': '79', 'type': 'None', 'children': []}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'try_statement', 'children': ['82', '90']}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'imaxval'}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'ftype'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'maxval'}; {'id': '90', 'type': 'except_clause', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'raise_statement', 'children': ['94']}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'binary_operator', 'children': ['98', '106'], 'value': '+'}; {'id': '98', 'type': 'binary_operator', 'children': ['99', '105'], 'value': '+'}, {'id': '99', 'type': 'binary_operator', 'children': ['100', '101'], 'value': '+'}; {'id': '100', 'type': 'string', 'children': [], 'value': '"\'"'}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'maxval'}, {'id': '105', 'type': 'string', 'children': [], 'value': '"\' cannot "'}; {'id': '106', 'type': 'string', 'children': [], 'value': '"be used as an maxval in readi()"'}, {'id': '107', 'type': 'else_clause', 'children': ['108']}; {'id': '108', 'type': 'block', 'children': ['109']}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'imaxval'}; {'id': '112', 'type': 'None', 'children': []}, {'id': '113', 'type': 'if_statement', 'children': ['114', '121', '126', '142', '158']}; {'id': '114', 'type': 'boolean_operator', 'children': ['115', '118'], 'value': 'and'}, {'id': '115', 'type': 'comparison_operator', 'children': ['116', '117'], 'value': 'is'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'minval'}, {'id': '117', 'type': 'None', 'children': []}; {'id': '118', 'type': 'comparison_operator', 'children': ['119', '120'], 'value': 'is'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'maxval'}; {'id': '120', 'type': 'None', 'children': []}, {'id': '121', 'type': 'block', 'children': ['122']}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'cminmax'}, {'id': '125', 'type': 'string', 'children': [], 'value': "''"}; {'id': '126', 'type': 'elif_clause', 'children': ['127', '130']}, {'id': '127', 'type': 'comparison_operator', 'children': ['128', '129'], 'value': 'is'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'minval'}, {'id': '129', 'type': 'None', 'children': []}; {'id': '130', 'type': 'block', 'children': ['131']}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'assignment', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'cminmax'}; {'id': '134', 'type': 'binary_operator', 'children': ['135', '141'], 'value': '+'}, {'id': '135', 'type': 'binary_operator', 'children': ['136', '137'], 'value': '+'}; {'id': '136', 'type': 'string', 'children': [], 'value': "' (number <= '"}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'imaxval'}, {'id': '141', 'type': 'string', 'children': [], 'value': "')'"}; {'id': '142', 'type': 'elif_clause', 'children': ['143', '146']}, {'id': '143', 'type': 'comparison_operator', 'children': ['144', '145'], 'value': 'is'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'maxval'}, {'id': '145', 'type': 'None', 'children': []}; {'id': '146', 'type': 'block', 'children': ['147']}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'cminmax'}; {'id': '150', 'type': 'binary_operator', 'children': ['151', '157'], 'value': '+'}, {'id': '151', 'type': 'binary_operator', 'children': ['152', '153'], 'value': '+'}; {'id': '152', 'type': 'string', 'children': [], 'value': "' (number >= '"}, {'id': '153', 'type': 'call', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'iminval'}, {'id': '157', 'type': 'string', 'children': [], 'value': "')'"}; {'id': '158', 'type': 'else_clause', 'children': ['159']}, {'id': '159', 'type': 'block', 'children': ['160']}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'cminmax'}, {'id': '163', 'type': 'binary_operator', 'children': ['164', '177'], 'value': '+'}; {'id': '164', 'type': 'binary_operator', 'children': ['165', '173'], 'value': '+'}, {'id': '165', 'type': 'binary_operator', 'children': ['166', '172'], 'value': '+'}; {'id': '166', 'type': 'binary_operator', 'children': ['167', '168'], 'value': '+'}, {'id': '167', 'type': 'string', 'children': [], 'value': "' ('"}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'minval'}; {'id': '172', 'type': 'string', 'children': [], 'value': "' <= number <= '"}, {'id': '173', 'type': 'call', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '175', 'type': 'argument_list', 'children': ['176']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'maxval'}, {'id': '177', 'type': 'string', 'children': [], 'value': "')'"}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'assignment', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'loop'}, {'id': '181', 'type': 'True', 'children': []}; {'id': '182', 'type': 'while_statement', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'loop'}; {'id': '184', 'type': 'block', 'children': ['185', '241', '255', '271', '291']}, {'id': '185', 'type': 'if_statement', 'children': ['186', '189', '210']}; {'id': '186', 'type': 'comparison_operator', 'children': ['187', '188'], 'value': 'is'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '188', 'type': 'None', 'children': []}, {'id': '189', 'type': 'block', 'children': ['190', '202']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'call', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '193', 'type': 'argument_list', 'children': ['194', '199']}; {'id': '194', 'type': 'binary_operator', 'children': ['195', '198'], 'value': '+'}, {'id': '195', 'type': 'binary_operator', 'children': ['196', '197'], 'value': '+'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'prompt'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'cminmax'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'cquestion_mark'}, {'id': '199', 'type': 'keyword_argument', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '201', 'type': 'string', 'children': [], 'value': "''"}; {'id': '202', 'type': 'expression_statement', 'children': ['203']}, {'id': '203', 'type': 'call', 'children': ['204', '209']}; {'id': '204', 'type': 'attribute', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'flush'}, {'id': '209', 'type': 'argument_list', 'children': []}; {'id': '210', 'type': 'else_clause', 'children': ['211']}, {'id': '211', 'type': 'block', 'children': ['212', '233']}; {'id': '212', 'type': 'expression_statement', 'children': ['213']}, {'id': '213', 'type': 'call', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '215', 'type': 'argument_list', 'children': ['216', '230']}; {'id': '216', 'type': 'binary_operator', 'children': ['217', '229'], 'value': '+'}, {'id': '217', 'type': 'binary_operator', 'children': ['218', '228'], 'value': '+'}; {'id': '218', 'type': 'binary_operator', 'children': ['219', '224'], 'value': '+'}, {'id': '219', 'type': 'binary_operator', 'children': ['220', '223'], 'value': '+'}; {'id': '220', 'type': 'binary_operator', 'children': ['221', '222'], 'value': '+'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'prompt'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'cminmax'}, {'id': '223', 'type': 'string', 'children': [], 'value': "' ['"}; {'id': '224', 'type': 'call', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '226', 'type': 'argument_list', 'children': ['227']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '228', 'type': 'string', 'children': [], 'value': "']'"}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'cquestion_mark'}; {'id': '230', 'type': 'keyword_argument', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '232', 'type': 'string', 'children': [], 'value': "''"}, {'id': '233', 'type': 'expression_statement', 'children': ['234']}; {'id': '234', 'type': 'call', 'children': ['235', '240']}, {'id': '235', 'type': 'attribute', 'children': ['236', '239']}; {'id': '236', 'type': 'attribute', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'flush'}; {'id': '240', 'type': 'argument_list', 'children': []}, {'id': '241', 'type': 'expression_statement', 'children': ['242']}; {'id': '242', 'type': 'assignment', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'cresult'}; {'id': '244', 'type': 'call', 'children': ['245', '254']}, {'id': '245', 'type': 'attribute', 'children': ['246', '253']}; {'id': '246', 'type': 'call', 'children': ['247', '252']}, {'id': '247', 'type': 'attribute', 'children': ['248', '251']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'stdin'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'readline'}; {'id': '252', 'type': 'argument_list', 'children': []}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '254', 'type': 'argument_list', 'children': []}, {'id': '255', 'type': 'if_statement', 'children': ['256', '263']}; {'id': '256', 'type': 'boolean_operator', 'children': ['257', '260'], 'value': 'and'}, {'id': '257', 'type': 'comparison_operator', 'children': ['258', '259'], 'value': '=='}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'cresult'}, {'id': '259', 'type': 'string', 'children': [], 'value': "''"}; {'id': '260', 'type': 'comparison_operator', 'children': ['261', '262'], 'value': 'is'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '262', 'type': 'None', 'children': []}, {'id': '263', 'type': 'block', 'children': ['264']}; {'id': '264', 'type': 'expression_statement', 'children': ['265']}, {'id': '265', 'type': 'assignment', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'cresult'}, {'id': '267', 'type': 'call', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '269', 'type': 'argument_list', 'children': ['270']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '271', 'type': 'if_statement', 'children': ['272', '278']}; {'id': '272', 'type': 'comparison_operator', 'children': ['273', '277'], 'value': '=='}, {'id': '273', 'type': 'call', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '275', 'type': 'argument_list', 'children': ['276']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'cresult'}, {'id': '277', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '278', 'type': 'block', 'children': ['279']}, {'id': '279', 'type': 'if_statement', 'children': ['280', '283']}; {'id': '280', 'type': 'comparison_operator', 'children': ['281', '282'], 'value': 'is'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'allowed_single_chars'}; {'id': '282', 'type': 'None', 'children': []}, {'id': '283', 'type': 'block', 'children': ['284']}; {'id': '284', 'type': 'if_statement', 'children': ['285', '288']}, {'id': '285', 'type': 'comparison_operator', 'children': ['286', '287'], 'value': 'in'}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'cresult'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'allowed_single_chars'}; {'id': '288', 'type': 'block', 'children': ['289']}, {'id': '289', 'type': 'return_statement', 'children': ['290']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'cresult'}, {'id': '291', 'type': 'try_statement', 'children': ['292', '300', '315']}; {'id': '292', 'type': 'block', 'children': ['293']}, {'id': '293', 'type': 'expression_statement', 'children': ['294']}; {'id': '294', 'type': 'assignment', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '296', 'type': 'call', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'ftype'}; {'id': '298', 'type': 'argument_list', 'children': ['299']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'cresult'}; {'id': '300', 'type': 'except_clause', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '302', 'type': 'block', 'children': ['303']}, {'id': '303', 'type': 'expression_statement', 'children': ['304']}; {'id': '304', 'type': 'call', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '306', 'type': 'argument_list', 'children': ['307']}, {'id': '307', 'type': 'binary_operator', 'children': ['308', '314'], 'value': '+'}; {'id': '308', 'type': 'binary_operator', 'children': ['309', '310'], 'value': '+'}, {'id': '309', 'type': 'string', 'children': [], 'value': '"*** Error: invalid "'}; {'id': '310', 'type': 'call', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '312', 'type': 'argument_list', 'children': ['313']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'ftype'}; {'id': '314', 'type': 'string', 'children': [], 'value': '" value. Try again!"'}, {'id': '315', 'type': 'else_clause', 'children': ['316']}; {'id': '316', 'type': 'block', 'children': ['317']}, {'id': '317', 'type': 'if_statement', 'children': ['318', '325', '330', '351', '372']}; {'id': '318', 'type': 'boolean_operator', 'children': ['319', '322'], 'value': 'and'}, {'id': '319', 'type': 'comparison_operator', 'children': ['320', '321'], 'value': 'is'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'minval'}, {'id': '321', 'type': 'None', 'children': []}; {'id': '322', 'type': 'comparison_operator', 'children': ['323', '324'], 'value': 'is'}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'maxval'}; {'id': '324', 'type': 'None', 'children': []}, {'id': '325', 'type': 'block', 'children': ['326']}; {'id': '326', 'type': 'expression_statement', 'children': ['327']}, {'id': '327', 'type': 'assignment', 'children': ['328', '329']}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'loop'}, {'id': '329', 'type': 'False', 'children': []}; {'id': '330', 'type': 'elif_clause', 'children': ['331', '334']}, {'id': '331', 'type': 'comparison_operator', 'children': ['332', '333'], 'value': 'is'}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'minval'}, {'id': '333', 'type': 'None', 'children': []}; {'id': '334', 'type': 'block', 'children': ['335']}, {'id': '335', 'type': 'if_statement', 'children': ['336', '339', '344']}; {'id': '336', 'type': 'comparison_operator', 'children': ['337', '338'], 'value': '<='}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'imaxval'}, {'id': '339', 'type': 'block', 'children': ['340']}; {'id': '340', 'type': 'expression_statement', 'children': ['341']}, {'id': '341', 'type': 'assignment', 'children': ['342', '343']}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'loop'}, {'id': '343', 'type': 'False', 'children': []}; {'id': '344', 'type': 'else_clause', 'children': ['345']}, {'id': '345', 'type': 'block', 'children': ['346']}; {'id': '346', 'type': 'expression_statement', 'children': ['347']}, {'id': '347', 'type': 'call', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '349', 'type': 'argument_list', 'children': ['350']}; {'id': '350', 'type': 'string', 'children': [], 'value': '"*** Error: number out of range. Try again!"'}, {'id': '351', 'type': 'elif_clause', 'children': ['352', '355']}; {'id': '352', 'type': 'comparison_operator', 'children': ['353', '354'], 'value': 'is'}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'maxval'}; {'id': '354', 'type': 'None', 'children': []}, {'id': '355', 'type': 'block', 'children': ['356']}; {'id': '356', 'type': 'if_statement', 'children': ['357', '360', '365']}, {'id': '357', 'type': 'comparison_operator', 'children': ['358', '359'], 'value': '>='}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'iminval'}; {'id': '360', 'type': 'block', 'children': ['361']}, {'id': '361', 'type': 'expression_statement', 'children': ['362']}; {'id': '362', 'type': 'assignment', 'children': ['363', '364']}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'loop'}; {'id': '364', 'type': 'False', 'children': []}, {'id': '365', 'type': 'else_clause', 'children': ['366']}; {'id': '366', 'type': 'block', 'children': ['367']}, {'id': '367', 'type': 'expression_statement', 'children': ['368']}; {'id': '368', 'type': 'call', 'children': ['369', '370']}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '370', 'type': 'argument_list', 'children': ['371']}, {'id': '371', 'type': 'string', 'children': [], 'value': '"*** Error: number out of range. Try again!"'}; {'id': '372', 'type': 'else_clause', 'children': ['373']}, {'id': '373', 'type': 'block', 'children': ['374']}; {'id': '374', 'type': 'if_statement', 'children': ['375', '379', '384']}, {'id': '375', 'type': 'comparison_operator', 'children': ['376', '377', '378'], 'value': '<='}; {'id': '376', 'type': 'identifier', 'children': [], 'value': 'iminval'}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'imaxval'}, {'id': '379', 'type': 'block', 'children': ['380']}; {'id': '380', 'type': 'expression_statement', 'children': ['381']}, {'id': '381', 'type': 'assignment', 'children': ['382', '383']}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'loop'}, {'id': '383', 'type': 'False', 'children': []}; {'id': '384', 'type': 'else_clause', 'children': ['385']}, {'id': '385', 'type': 'block', 'children': ['386']}; {'id': '386', 'type': 'expression_statement', 'children': ['387']}, {'id': '387', 'type': 'call', 'children': ['388', '389']}; {'id': '388', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '389', 'type': 'argument_list', 'children': ['390']}; {'id': '390', 'type': 'string', 'children': [], 'value': '"*** Error: number out of range. Try again!"'}, {'id': '391', 'type': 'return_statement', 'children': ['392']}

def read_value(ftype, prompt, default=None, minval=None, maxval=None, allowed_single_chars=None, question_mark=True): result = None if question_mark: cquestion_mark = ' ? ' else: cquestion_mark = '' if minval is not None: try: iminval = ftype(minval) except ValueError: raise ValueError("'" + str(minval) + "' cannot " + "be used as an minval in readi()") else: iminval = None if maxval is not None: try: imaxval = ftype(maxval) except ValueError: raise ValueError("'" + str(maxval) + "' cannot " + "be used as an maxval in readi()") else: imaxval = None if minval is None and maxval is None: cminmax = '' elif minval is None: cminmax = ' (number <= ' + str(imaxval) + ')' elif maxval is None: cminmax = ' (number >= ' + str(iminval) + ')' else: cminmax = ' (' + str(minval) + ' <= number <= ' + str(maxval) + ')' loop = True while loop: if default is None: print(prompt + cminmax + cquestion_mark, end='') sys.stdout.flush() else: print(prompt + cminmax + ' [' + str(default) + ']' + cquestion_mark, end='') sys.stdout.flush() cresult = sys.stdin.readline().strip() if cresult == '' and default is not None: cresult = str(default) if len(cresult) == 1: if allowed_single_chars is not None: if cresult in allowed_single_chars: return cresult try: result = ftype(cresult) except ValueError: print("*** Error: invalid " + str(ftype) + " value. Try again!") else: if minval is None and maxval is None: loop = False elif minval is None: if result <= imaxval: loop = False else: print("*** Error: number out of range. Try again!") elif maxval is None: if result >= iminval: loop = False else: print("*** Error: number out of range. Try again!") else: if iminval <= result <= imaxval: loop = False else: print("*** Error: number out of range. Try again!") return result

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{'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'string', 'children': [], 'value': "'calling default configuration selector'"}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ref'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'obresult'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'get_sample_frame'}; {'id': '30', 'type': 'argument_list', 'children': []}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'extr'}; {'id': '34', 'type': 'subscript', 'children': ['35', '40']}, {'id': '35', 'type': 'attribute', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'datamodel'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'extractor_map'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'fits'"}, {'id': '41', 'type': 'if_statement', 'children': ['42', '43', '180']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '43', 'type': 'block', 'children': ['44', '54', '111', '121']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; 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{'id': '64', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '65', 'type': 'if_statement', 'children': ['66', '71', '78']}; {'id': '66', 'type': 'comparison_operator', 'children': ['67', '68'], 'value': 'in'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'configurations'}, {'id': '71', 'type': 'block', 'children': ['72']}; {'id': '72', 'type': 'return_statement', 'children': ['73']}, {'id': '73', 'type': 'subscript', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'configurations'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '78', 'type': 'else_clause', 'children': ['79']}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'for_statement', 'children': ['81', '82', '89', '99']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '82', 'type': 'call', 'children': ['83', '88']}, {'id': '83', 'type': 'attribute', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'configurations'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '88', 'type': 'argument_list', 'children': []}, {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'if_statement', 'children': ['91', '96']}, {'id': '91', 'type': 'comparison_operator', 'children': ['92', '95'], 'value': '=='}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'result'}; 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{'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'date_obs'}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'extr'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'extract'}; {'id': '118', 'type': 'argument_list', 'children': ['119', '120']}, {'id': '119', 'type': 'string', 'children': [], 'value': "'observation_date'"}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '121', 'type': 'for_statement', 'children': ['122', '125', '132']}; {'id': '122', 'type': 'pattern_list', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'conf'}, {'id': '125', 'type': 'call', 'children': ['126', '131']}; {'id': '126', 'type': 'attribute', 'children': ['127', '130']}, {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'configurations'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '131', 'type': 'argument_list', 'children': []}; {'id': '132', 'type': 'block', 'children': ['133', '139', '160']}, {'id': '133', 'type': 'if_statement', 'children': ['134', '137']}; {'id': '134', 'type': 'comparison_operator', 'children': ['135', '136'], 'value': '=='}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '136', 'type': 'string', 'children': [], 'value': "'default'"}, {'id': '137', 'type': 'block', 'children': ['138']}; {'id': '138', 'type': 'continue_statement', 'children': []}, {'id': '139', 'type': 'if_statement', 'children': ['140', '145', '154']}; {'id': '140', 'type': 'comparison_operator', 'children': ['141', '144'], 'value': 'is'}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'conf'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'date_end'}; {'id': '144', 'type': 'None', 'children': []}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'upper_t'}, {'id': '149', 'type': 'comparison_operator', 'children': ['150', '151'], 'value': '<'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'date_obs'}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'conf'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'date_end'}; {'id': '154', 'type': 'else_clause', 'children': ['155']}, {'id': '155', 'type': 'block', 'children': ['156']}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'upper_t'}, {'id': '159', 'type': 'True', 'children': []}; {'id': '160', 'type': 'if_statement', 'children': ['161', '169']}, {'id': '161', 'type': 'boolean_operator', 'children': ['162', '163'], 'value': 'and'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'upper_t'}, {'id': '163', 'type': 'parenthesized_expression', 'children': ['164'], 'value': '()'}; {'id': '164', 'type': 'comparison_operator', 'children': ['165', '166'], 'value': '>='}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'date_obs'}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'date_start'}, {'id': '169', 'type': 'block', 'children': ['170', '178']}; {'id': '170', 'type': 'expression_statement', 'children': ['171']}, {'id': '171', 'type': 'call', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '175', 'type': 'argument_list', 'children': ['176', '177']}; {'id': '176', 'type': 'string', 'children': [], 'value': "'found date match, config uuid=%s'"}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '178', 'type': 'return_statement', 'children': ['179']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '180', 'type': 'else_clause', 'children': ['181']}, {'id': '181', 'type': 'block', 'children': ['182', '189']}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'call', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'string', 'children': [], 'value': "'no match, using default configuration'"}, {'id': '189', 'type': 'return_statement', 'children': ['190']}; {'id': '190', 'type': 'subscript', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'configurations'}

def select_configuration(self, obresult): logger = logging.getLogger(__name__) logger.debug('calling default configuration selector') ref = obresult.get_sample_frame() extr = self.datamodel.extractor_map['fits'] if ref: result = extr.extract('insconf', ref) if result: logger.debug('found insconf config uuid=%s', result) if result in self.configurations: return self.configurations[result] else: for conf in self.configurations.values(): if conf.name == result: return conf else: raise KeyError('insconf {} does not match any config'.format(result)) date_obs = extr.extract('observation_date', ref) for key, conf in self.configurations.items(): if key == 'default': continue if conf.date_end is not None: upper_t = date_obs < conf.date_end else: upper_t = True if upper_t and (date_obs >= conf.date_start): logger.debug('found date match, config uuid=%s', key) return conf else: logger.debug('no match, using default configuration') return self.configurations['default']

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'pause_debugplot'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'debugplot'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'optional_prompt'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'pltshow'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'tight_layout'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '26', '50', '187']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '19']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'not'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'debugplot'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'DEBUGPLOT_CODES'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'raise_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'Invalid debugplot value:'"}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'debugplot'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '30', '40']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '29'], 'value': '<'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'debugplot'}, {'id': '29', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '30', 'type': 'block', 'children': ['31', '36']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'debugplot_'}; {'id': '34', 'type': 'unary_operator', 'children': ['35'], 'value': '-'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'debugplot'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'pltclose'}, {'id': '39', 'type': 'True', 'children': []}; {'id': '40', 'type': 'else_clause', 'children': ['41']}, {'id': '41', 'type': 'block', 'children': ['42', '46']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'debugplot_'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'debugplot'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'pltclose'}, {'id': '49', 'type': 'False', 'children': []}; {'id': '50', 'type': 'if_statement', 'children': ['51', '52', '132']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'pltshow'}; {'id': '52', 'type': 'block', 'children': ['53']}, {'id': '53', 'type': 'if_statement', 'children': ['54', '63']}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': 'in'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'debugplot_'}; {'id': '56', 'type': 'list', 'children': ['57', '58', '59', '60', '61', '62'], 'value': '[1, 2, 11, 12, 21, 22]'}, {'id': '57', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '59', 'type': 'integer', 'children': [], 'value': '11'}; {'id': '60', 'type': 'integer', 'children': [], 'value': '12'}, {'id': '61', 'type': 'integer', 'children': [], 'value': '21'}; {'id': '62', 'type': 'integer', 'children': [], 'value': '22'}, {'id': '63', 'type': 'block', 'children': ['64', '73']}; {'id': '64', 'type': 'if_statement', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'tight_layout'}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'plt'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'tight_layout'}; {'id': '72', 'type': 'argument_list', 'children': []}, {'id': '73', 'type': 'if_statement', 'children': ['74', '80', '97']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '76'], 'value': 'in'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'debugplot_'}; {'id': '76', 'type': 'list', 'children': ['77', '78', '79'], 'value': '[1, 11, 21]'}, {'id': '77', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '11'}, {'id': '79', 'type': 'integer', 'children': [], 'value': '21'}; {'id': '80', 'type': 'block', 'children': ['81', '90']}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'plt'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'show'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'block'}, {'id': '89', 'type': 'False', 'children': []}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'plt'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'pause'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'float', 'children': [], 'value': '0.2'}, {'id': '97', 'type': 'elif_clause', 'children': ['98', '104']}; {'id': '98', 'type': 'comparison_operator', 'children': ['99', '100'], 'value': 'in'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'debugplot_'}; {'id': '100', 'type': 'list', 'children': ['101', '102', '103'], 'value': '[2, 12, 22]'}, {'id': '101', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '12'}, {'id': '103', 'type': 'integer', 'children': [], 'value': '22'}; {'id': '104', 'type': 'block', 'children': ['105', '113', '121', '127']}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '110']}, {'id': '109', 'type': 'string', 'children': [], 'value': '\'Press "q" to continue...\''}; {'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '112', 'type': 'string', 'children': [], 'value': "''"}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'call', 'children': ['115', '120']}, {'id': '115', 'type': 'attribute', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'flush'}; {'id': '120', 'type': 'argument_list', 'children': []}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'call', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'plt'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'show'}; {'id': '126', 'type': 'argument_list', 'children': []}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '130', 'type': 'argument_list', 'children': ['131']}, {'id': '131', 'type': 'string', 'children': [], 'value': "''"}; {'id': '132', 'type': 'else_clause', 'children': ['133']}, {'id': '133', 'type': 'block', 'children': ['134']}; {'id': '134', 'type': 'if_statement', 'children': ['135', '141']}, {'id': '135', 'type': 'comparison_operator', 'children': ['136', '137'], 'value': 'in'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'debugplot_'}, {'id': '137', 'type': 'list', 'children': ['138', '139', '140'], 'value': '[2, 12, 22]'}; {'id': '138', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '139', 'type': 'integer', 'children': [], 'value': '12'}; {'id': '140', 'type': 'integer', 'children': [], 'value': '22'}, {'id': '141', 'type': 'block', 'children': ['142', '165', '173']}; {'id': '142', 'type': 'if_statement', 'children': ['143', '146', '155']}, {'id': '143', 'type': 'comparison_operator', 'children': ['144', '145'], 'value': 'is'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'optional_prompt'}, {'id': '145', 'type': 'None', 'children': []}; {'id': '146', 'type': 'block', 'children': ['147']}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'call', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '150', 'type': 'argument_list', 'children': ['151', '152']}, {'id': '151', 'type': 'string', 'children': [], 'value': "'Press <RETURN> to continue...'"}; {'id': '152', 'type': 'keyword_argument', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '154', 'type': 'string', 'children': [], 'value': "''"}, {'id': '155', 'type': 'else_clause', 'children': ['156']}; {'id': '156', 'type': 'block', 'children': ['157']}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'call', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '160', 'type': 'argument_list', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'optional_prompt'}; {'id': '162', 'type': 'keyword_argument', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '164', 'type': 'string', 'children': [], 'value': "''"}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'call', 'children': ['167', '172']}, {'id': '167', 'type': 'attribute', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'flush'}; {'id': '172', 'type': 'argument_list', 'children': []}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'cdummy'}; {'id': '176', 'type': 'call', 'children': ['177', '186']}, {'id': '177', 'type': 'attribute', 'children': ['178', '185']}; {'id': '178', 'type': 'call', 'children': ['179', '184']}, {'id': '179', 'type': 'attribute', 'children': ['180', '183']}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'stdin'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'readline'}; {'id': '184', 'type': 'argument_list', 'children': []}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '186', 'type': 'argument_list', 'children': []}, {'id': '187', 'type': 'if_statement', 'children': ['188', '199']}; {'id': '188', 'type': 'boolean_operator', 'children': ['189', '198'], 'value': 'and'}, {'id': '189', 'type': 'comparison_operator', 'children': ['190', '191'], 'value': 'in'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'debugplot_'}, {'id': '191', 'type': 'list', 'children': ['192', '193', '194', '195', '196', '197'], 'value': '[1, 2, 11, 12, 21, 22]'}; {'id': '192', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '193', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '194', 'type': 'integer', 'children': [], 'value': '11'}, {'id': '195', 'type': 'integer', 'children': [], 'value': '12'}; {'id': '196', 'type': 'integer', 'children': [], 'value': '21'}, {'id': '197', 'type': 'integer', 'children': [], 'value': '22'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'pltclose'}, {'id': '199', 'type': 'block', 'children': ['200']}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'call', 'children': ['202', '205']}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'plt'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'close'}, {'id': '205', 'type': 'argument_list', 'children': []}

def pause_debugplot(debugplot, optional_prompt=None, pltshow=False, tight_layout=True): if debugplot not in DEBUGPLOT_CODES: raise ValueError('Invalid debugplot value:', debugplot) if debugplot < 0: debugplot_ = -debugplot pltclose = True else: debugplot_ = debugplot pltclose = False if pltshow: if debugplot_ in [1, 2, 11, 12, 21, 22]: if tight_layout: plt.tight_layout() if debugplot_ in [1, 11, 21]: plt.show(block=False) plt.pause(0.2) elif debugplot_ in [2, 12, 22]: print('Press "q" to continue...', end='') sys.stdout.flush() plt.show() print('') else: if debugplot_ in [2, 12, 22]: if optional_prompt is None: print('Press <RETURN> to continue...', end='') else: print(optional_prompt, end='') sys.stdout.flush() cdummy = sys.stdin.readline().strip() if debugplot_ in [1, 2, 11, 12, 21, 22] and pltclose: plt.close()

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Frühwirth (contributed equally),\n "On a fast, robust estimator of the mode: Comparisons to other\n robust estimators with applications,"\n Computational Statistics and Data Analysis 50, 3500-3530 (2006).\n Example\n =======\n >> import numpy as np\n >> np.random.seed(1392838)\n >> a = np.random.normal(1000, 200, size=1000)\n >> a[:100] = np.random.normal(2000, 300, size=100)\n >> b = np.sort(a)\n >> mode_half_sample(b, is_sorted=True)\n 1041.9327885039545\n \'\'\''}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '14', 'type': 'call', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'asanyarray'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'a'}; 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{'id': '164', 'type': 'binary_operator', 'children': ['165', '168'], 'value': '+'}, {'id': '165', 'type': 'binary_operator', 'children': ['166', '167'], 'value': '-'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '168', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'assignment', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'ar'}; {'id': '172', 'type': 'call', 'children': ['173', '176']}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'w'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'argmin'}; {'id': '176', 'type': 'argument_list', 'children': []}, {'id': '177', 'type': 'return_statement', 'children': ['178']}; {'id': '178', 'type': 'call', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'mode_half_sample'}; {'id': '180', 'type': 'argument_list', 'children': ['181', '189']}, {'id': '181', 'type': 'subscript', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'sdata'}, {'id': '183', 'type': 'slice', 'children': ['184', '185', '186']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'ar'}, {'id': '185', 'type': 'colon', 'children': []}; {'id': '186', 'type': 'binary_operator', 'children': ['187', '188'], 'value': '+'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'ar'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '189', 'type': 'keyword_argument', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'is_sorted'}, {'id': '191', 'type': 'True', 'children': []}

def mode_half_sample(a, is_sorted=False): ''' Estimate the mode using the Half Sample mode. A method to estimate the mode, as described in D. R. Bickel and R. Frühwirth (contributed equally), "On a fast, robust estimator of the mode: Comparisons to other robust estimators with applications," Computational Statistics and Data Analysis 50, 3500-3530 (2006). Example ======= >> import numpy as np >> np.random.seed(1392838) >> a = np.random.normal(1000, 200, size=1000) >> a[:100] = np.random.normal(2000, 300, size=100) >> b = np.sort(a) >> mode_half_sample(b, is_sorted=True) 1041.9327885039545 ''' a = np.asanyarray(a) if not is_sorted: sdata = np.sort(a) else: sdata = a n = len(sdata) if n == 1: return sdata[0] elif n == 2: return 0.5 * (sdata[0] + sdata[1]) elif n == 3: ind = -sdata[0] + 2 * sdata[1] - sdata[2] if ind < 0: return 0.5 * (sdata[0] + sdata[1]) elif ind > 0: return 0.5 * (sdata[1] + sdata[2]) else: return sdata[1] else: N = int(math.ceil(n / 2.0)) w = sdata[(N-1):] - sdata[:(n-N+1)] ar = w.argmin() return mode_half_sample(sdata[ar:ar+N], is_sorted=True)

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{'id': '32', 'type': 'if_statement', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'return_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'string', 'children': [], 'value': "'uid'"}, {'id': '47', 'type': 'if_statement', 'children': ['48', '60']}; {'id': '48', 'type': 'boolean_operator', 'children': ['49', '55'], 'value': 'and'}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'idutils'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'is_orcid'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'uid'}, {'id': '55', 'type': 'comparison_operator', 'children': ['56', '57'], 'value': 'in'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '57', 'type': 'tuple', 'children': ['58', '59']}; {'id': '58', 'type': 'None', 'children': []}, {'id': '59', 'type': 'string', 'children': [], 'value': "'ORCID'"}; {'id': '60', 'type': 'block', 'children': ['61']}, {'id': '61', 'type': 'return_statement', 'children': ['62']}; {'id': '62', 'type': 'expression_list', 'children': ['63', '69']}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; 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{'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'uid'}; {'id': '82', 'type': 'if_statement', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '84', 'type': 'block', 'children': ['85', '93']}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'normalized_uid'}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': '_get_uid_normalized_in_schema'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'uid'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '93', 'type': 'if_statement', 'children': ['94', '95', '100']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'normalized_uid'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'return_statement', 'children': ['97']}, {'id': '97', 'type': 'expression_list', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'normalized_uid'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '100', 'type': 'else_clause', 'children': ['101']}, {'id': '101', 'type': 'block', 'children': ['102']}; {'id': '102', 'type': 'raise_statement', 'children': ['103']}, {'id': '103', 'type': 'call', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'SchemaUIDConflict'}, {'id': '105', 'type': 'argument_list', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'uid'}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'assignment', 'children': ['110', '113']}; {'id': '110', 'type': 'pattern_list', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'match_schema'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'normalized_uid'}, {'id': '113', 'type': 'expression_list', 'children': ['114', '115']}; {'id': '114', 'type': 'None', 'children': []}, {'id': '115', 'type': 'None', 'children': []}; {'id': '116', 'type': 'for_statement', 'children': ['117', '118', '119']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'candidate_schema'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': '_RE_AUTHORS_UID'}, {'id': '119', 'type': 'block', 'children': ['120', '128']}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'assignment', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'candidate_uid'}, {'id': '123', 'type': 'call', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': '_get_uid_normalized_in_schema'}, {'id': '125', 'type': 'argument_list', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'uid'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'candidate_schema'}; {'id': '128', 'type': 'if_statement', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'candidate_uid'}; {'id': '130', 'type': 'block', 'children': ['131', '139', '143']}, {'id': '131', 'type': 'if_statement', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'match_schema'}, {'id': '133', 'type': 'block', 'children': ['134']}; {'id': '134', 'type': 'raise_statement', 'children': ['135']}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'UnknownUIDSchema'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'uid'}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'assignment', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'match_schema'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'candidate_schema'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'normalized_uid'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'candidate_uid'}, {'id': '147', 'type': 'if_statement', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'match_schema'}, {'id': '149', 'type': 'block', 'children': ['150']}; {'id': '150', 'type': 'return_statement', 'children': ['151']}, {'id': '151', 'type': 'expression_list', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'normalized_uid'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'match_schema'}; {'id': '154', 'type': 'raise_statement', 'children': ['155']}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'UnknownUIDSchema'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}

def author_id_normalize_and_schema(uid, schema=None): def _get_uid_normalized_in_schema(_uid, _schema): regex, template = _RE_AUTHORS_UID[_schema] match = regex.match(_uid) if match: return template.format(match.group('uid')) if idutils.is_orcid(uid) and schema in (None, 'ORCID'): return idutils.normalize_orcid(uid), 'ORCID' if schema and schema not in _RE_AUTHORS_UID: raise UnknownUIDSchema(uid) if schema: normalized_uid = _get_uid_normalized_in_schema(uid, schema) if normalized_uid: return normalized_uid, schema else: raise SchemaUIDConflict(schema, uid) match_schema, normalized_uid = None, None for candidate_schema in _RE_AUTHORS_UID: candidate_uid = _get_uid_normalized_in_schema(uid, candidate_schema) if candidate_uid: if match_schema: raise UnknownUIDSchema(uid) match_schema = candidate_schema normalized_uid = candidate_uid if match_schema: return normalized_uid, match_schema raise UnknownUIDSchema(uid)

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{'id': '16', 'type': 'identifier', 'children': [], 'value': 'stripped_path'}, {'id': '17', 'type': 'subscript', 'children': ['18', '29']}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '28']}, {'id': '23', 'type': 'attribute', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '29', 'type': 'slice', 'children': ['30', '31']}; {'id': '30', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '31', 'type': 'colon', 'children': []}; {'id': '32', 'type': 'return_statement', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'string', 'children': [], 'value': "''"}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'stripped_path'}, {'id': '39', 'type': 'function_definition', 'children': ['40', '41', '43']}; {'id': '40', 'type': 'function_name', 'children': [], 'value': '_schema_to_normalized_path'}, {'id': '41', 'type': 'parameters', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '43', 'type': 'block', 'children': ['44', '66', '86', '99']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '47', 'type': 'call', 'children': ['48', '53']}; {'id': '48', 'type': 'attribute', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'normpath'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'binary_operator', 'children': ['55', '60'], 'value': '+'}, {'id': '55', 'type': 'attribute', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '60', 'type': 'attribute', 'children': ['61', '65']}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'urlsplit'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '66', 'type': 'if_statement', 'children': ['67', '77']}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'attribute', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'sep'}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '81', 'type': 'subscript', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '83', 'type': 'slice', 'children': ['84', '85']}; {'id': '84', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '85', 'type': 'colon', 'children': []}; {'id': '86', 'type': 'if_statement', 'children': ['87', '94']}, {'id': '87', 'type': 'not_operator', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'endswith'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'string', 'children': [], 'value': "'.json'"}; {'id': '94', 'type': 'block', 'children': ['95']}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'augmented_assignment', 'children': ['97', '98'], 'value': '+='}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '98', 'type': 'string', 'children': [], 'value': "'.json'"}, {'id': '99', 'type': 'return_statement', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'assignment', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': '_schema_to_normalized_path'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '108', 'type': 'while_statement', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '110', 'type': 'block', 'children': ['111', '154', '173']}, {'id': '111', 'type': 'if_statement', 'children': ['112', '113', '133']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'resolved'}, {'id': '113', 'type': 'block', 'children': ['114']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'schema_path'}, {'id': '117', 'type': 'call', 'children': ['118', '123']}; {'id': '118', 'type': 'attribute', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'abspath'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'call', 'children': ['125', '130']}, {'id': '125', 'type': 'attribute', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '130', 'type': 'argument_list', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': '_resolved_schema_root_path'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '133', 'type': 'else_clause', 'children': ['134']}; {'id': '134', 'type': 'block', 'children': ['135']}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'assignment', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'schema_path'}; {'id': '138', 'type': 'call', 'children': ['139', '144']}, {'id': '139', 'type': 'attribute', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'abspath'}; {'id': '144', 'type': 'argument_list', 'children': ['145']}, {'id': '145', 'type': 'call', 'children': ['146', '151']}; {'id': '146', 'type': 'attribute', 'children': ['147', '150']}, {'id': '147', 'type': 'attribute', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '151', 'type': 'argument_list', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': '_schema_root_path'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '154', 'type': 'if_statement', 'children': ['155', '163']}, {'id': '155', 'type': 'call', 'children': ['156', '161']}; {'id': '156', 'type': 'attribute', 'children': ['157', '160']}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '161', 'type': 'argument_list', 'children': ['162']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'schema_path'}, {'id': '163', 'type': 'block', 'children': ['164']}; {'id': '164', 'type': 'return_statement', 'children': ['165']}, {'id': '165', 'type': 'call', 'children': ['166', '171']}; {'id': '166', 'type': 'attribute', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'abspath'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'schema_path'}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '176', 'type': 'call', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': '_strip_first_path_elem'}; {'id': '178', 'type': 'argument_list', 'children': ['179']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '180', 'type': 'raise_statement', 'children': ['181']}, {'id': '181', 'type': 'call', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'SchemaNotFound'}, {'id': '183', 'type': 'argument_list', 'children': ['184']}; {'id': '184', 'type': 'keyword_argument', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'schema'}

def get_schema_path(schema, resolved=False): def _strip_first_path_elem(path): stripped_path = path.split(os.path.sep, 1)[1:] return ''.join(stripped_path) def _schema_to_normalized_path(schema): path = os.path.normpath(os.path.sep + urlsplit(schema).path) if path.startswith(os.path.sep): path = path[1:] if not path.endswith('.json'): path += '.json' return path path = _schema_to_normalized_path(schema) while path: if resolved: schema_path = os.path.abspath(os.path.join(_resolved_schema_root_path, path)) else: schema_path = os.path.abspath(os.path.join(_schema_root_path, path)) if os.path.exists(schema_path): return os.path.abspath(schema_path) path = _strip_first_path_elem(path) raise SchemaNotFound(schema=schema)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_license_from_url'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '5', 'type': 'block', 'children': ['6', '11', '21', '167']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '9']}, {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '9', 'type': 'block', 'children': ['10']}; {'id': '10', 'type': 'return_statement', 'children': []}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'split_url'}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'urlsplit'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '18', 'type': 'keyword_argument', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '20', 'type': 'string', 'children': [], 'value': "'http'"}, {'id': '21', 'type': 'if_statement', 'children': ['22', '31', '121', '160']}; {'id': '22', 'type': 'comparison_operator', 'children': ['23', '30'], 'value': '=='}, {'id': '23', 'type': 'call', 'children': ['24', '29']}; {'id': '24', 'type': 'attribute', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'split_url'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'netloc'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'string', 'children': [], 'value': "'creativecommons.org'"}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'if_statement', 'children': ['33', '38', '83']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'in'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'publicdomain'"}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'split_url'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '38', 'type': 'block', 'children': ['39', '50']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '_RE_PUBLIC_DOMAIN_URL'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'split_url'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '50', 'type': 'if_statement', 'children': ['51', '54', '60']}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': 'is'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '53', 'type': 'None', 'children': []}; {'id': '54', 'type': 'block', 'children': ['55']}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'license'}; {'id': '58', 'type': 'list', 'children': ['59'], 'value': "['public domain']"}, {'id': '59', 'type': 'string', 'children': [], 'value': "'public domain'"}; {'id': '60', 'type': 'else_clause', 'children': ['61']}, {'id': '61', 'type': 'block', 'children': ['62', '67']}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'license'}, {'id': '65', 'type': 'list', 'children': ['66'], 'value': "['CC0']"}; {'id': '66', 'type': 'string', 'children': [], 'value': "'CC0'"}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'license'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'extend'}; {'id': '72', 'type': 'generator_expression', 'children': ['73', '74', '81']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'part'}; {'id': '74', 'type': 'for_in_clause', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'part'}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '80', 'type': 'argument_list', 'children': []}, {'id': '81', 'type': 'if_clause', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'part'}, {'id': '83', 'type': 'else_clause', 'children': ['84']}; {'id': '84', 'type': 'block', 'children': ['85', '90', '101']}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'license'}; {'id': '88', 'type': 'list', 'children': ['89'], 'value': "['CC']"}, {'id': '89', 'type': 'string', 'children': [], 'value': "'CC'"}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': '_RE_LICENSE_URL'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'split_url'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'license'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'extend'}; {'id': '106', 'type': 'generator_expression', 'children': ['107', '112', '119']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'part'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'upper'}, {'id': '111', 'type': 'argument_list', 'children': []}; {'id': '112', 'type': 'for_in_clause', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'part'}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '118', 'type': 'argument_list', 'children': []}, {'id': '119', 'type': 'if_clause', 'children': ['120']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'part'}, {'id': '121', 'type': 'elif_clause', 'children': ['122', '127']}; {'id': '122', 'type': 'comparison_operator', 'children': ['123', '126'], 'value': '=='}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'split_url'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'netloc'}; {'id': '126', 'type': 'string', 'children': [], 'value': "'arxiv.org'"}, {'id': '127', 'type': 'block', 'children': ['128', '133', '144']}; {'id': '128', 'type': 'expression_statement', 'children': ['129']}, {'id': '129', 'type': 'assignment', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'license'}, {'id': '131', 'type': 'list', 'children': ['132'], 'value': "['arXiv']"}; {'id': '132', 'type': 'string', 'children': [], 'value': "'arXiv'"}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': '_RE_LICENSE_URL'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'split_url'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'license'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'extend'}, {'id': '149', 'type': 'generator_expression', 'children': ['150', '151', '158']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'part'}, {'id': '151', 'type': 'for_in_clause', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'part'}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'groups'}, {'id': '157', 'type': 'argument_list', 'children': []}; {'id': '158', 'type': 'if_clause', 'children': ['159']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'part'}; {'id': '160', 'type': 'else_clause', 'children': ['161']}, {'id': '161', 'type': 'block', 'children': ['162']}; {'id': '162', 'type': 'raise_statement', 'children': ['163']}, {'id': '163', 'type': 'call', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '165', 'type': 'argument_list', 'children': ['166']}; {'id': '166', 'type': 'string', 'children': [], 'value': "'Unknown license URL'"}, {'id': '167', 'type': 'return_statement', 'children': ['168']}; {'id': '168', 'type': 'call', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'string', 'children': [], 'value': "u' '"}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '172', 'type': 'argument_list', 'children': ['173']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'license'}

def get_license_from_url(url): if not url: return split_url = urlsplit(url, scheme='http') if split_url.netloc.lower() == 'creativecommons.org': if 'publicdomain' in split_url.path: match = _RE_PUBLIC_DOMAIN_URL.match(split_url.path) if match is None: license = ['public domain'] else: license = ['CC0'] license.extend(part for part in match.groups() if part) else: license = ['CC'] match = _RE_LICENSE_URL.match(split_url.path) license.extend(part.upper() for part in match.groups() if part) elif split_url.netloc == 'arxiv.org': license = ['arXiv'] match = _RE_LICENSE_URL.match(split_url.path) license.extend(part for part in match.groups() if part) else: raise ValueError('Unknown license URL') return u' '.join(license)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'convert_old_publication_info_to_new'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'publication_infos'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '14', '280', '302']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'hidden_publication_infos'}, {'id': '13', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '14', 'type': 'for_statement', 'children': ['15', '16', '17']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'publication_info'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'publication_infos'}, {'id': '17', 'type': 'block', 'children': ['18', '27', '36', '62', '71', '148', '251', '261']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': '_publication_info'}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'deepcopy'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'publication_info'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'journal_title'}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': '_publication_info'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'string', 'children': [], 'value': "'journal_title'"}; {'id': '36', 'type': 'try_statement', 'children': ['37', '58']}, {'id': '37', 'type': 'block', 'children': ['38', '44', '50', '57']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'journal_title'}, {'id': '41', 'type': 'subscript', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': '_JOURNALS_RENAMED_OLD_TO_NEW'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'journal_title'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '49']}; {'id': '46', 'type': 'subscript', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': '_publication_info'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'journal_title'"}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'journal_title'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': '_publication_info'}, {'id': '57', 'type': 'continue_statement', 'children': []}; {'id': '58', 'type': 'except_clause', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'KeyError'}; {'id': '60', 'type': 'block', 'children': ['61']}, {'id': '61', 'type': 'pass_statement', 'children': []}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'journal_volume'}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': '_publication_info'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'string', 'children': [], 'value': "'journal_volume'"}, {'id': '71', 'type': 'if_statement', 'children': ['72', '84']}; {'id': '72', 'type': 'boolean_operator', 'children': ['73', '78'], 'value': 'and'}, {'id': '73', 'type': 'boolean_operator', 'children': ['74', '77'], 'value': 'and'}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '76'], 'value': 'in'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'journal_title'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': '_JOURNALS_WITH_YEAR_ADDED_TO_VOLUME'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'journal_volume'}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '83'], 'value': '=='}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'journal_volume'}, {'id': '83', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '84', 'type': 'block', 'children': ['85', '140', '147']}, {'id': '85', 'type': 'try_statement', 'children': ['86', '100', '104']}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'was_last_century'}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '99'], 'value': '>'}, {'id': '91', 'type': 'call', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'subscript', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'journal_volume'}; {'id': '96', 'type': 'slice', 'children': ['97', '98']}, {'id': '97', 'type': 'colon', 'children': []}; {'id': '98', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '99', 'type': 'integer', 'children': [], 'value': '50'}; {'id': '100', 'type': 'except_clause', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'pass_statement', 'children': []}; {'id': '104', 'type': 'else_clause', 'children': ['105']}, {'id': '105', 'type': 'block', 'children': ['106', '130']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '111']}; {'id': '108', 'type': 'subscript', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': '_publication_info'}; 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def convert_old_publication_info_to_new(publication_infos): result = [] hidden_publication_infos = [] for publication_info in publication_infos: _publication_info = copy.deepcopy(publication_info) journal_title = _publication_info.get('journal_title') try: journal_title = _JOURNALS_RENAMED_OLD_TO_NEW[journal_title] _publication_info['journal_title'] = journal_title result.append(_publication_info) continue except KeyError: pass journal_volume = _publication_info.get('journal_volume') if journal_title in _JOURNALS_WITH_YEAR_ADDED_TO_VOLUME and journal_volume and len(journal_volume) == 4: try: was_last_century = int(journal_volume[:2]) > 50 except ValueError: pass else: _publication_info['year'] = int('19' + journal_volume[:2] if was_last_century else '20' + journal_volume[:2]) _publication_info['journal_volume'] = journal_volume[2:] result.append(_publication_info) continue if journal_title and journal_volume and journal_title.lower() not in JOURNALS_IGNORED_IN_OLD_TO_NEW: volume_starts_with_a_letter = _RE_VOLUME_STARTS_WITH_A_LETTER.match(journal_volume) volume_ends_with_a_letter = _RE_VOLUME_ENDS_WITH_A_LETTER.match(journal_volume) match = volume_starts_with_a_letter or volume_ends_with_a_letter if match: _publication_info.pop('journal_record', None) if journal_title in _JOURNALS_RENAMED_OLD_TO_NEW.values(): _publication_info['journal_title'] = journal_title else: _publication_info['journal_title'] = ''.join([ journal_title, '' if journal_title.endswith('.') else ' ', match.group('letter'), ]) _publication_info['journal_volume'] = match.group('volume') hidden = _publication_info.pop('hidden', None) if hidden: hidden_publication_infos.append(_publication_info) else: result.append(_publication_info) for publication_info in hidden_publication_infos: if publication_info not in result: publication_info['hidden'] = True result.append(publication_info) return result

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{'id': '46', 'type': 'string', 'children': [], 'value': "'CO'"}, {'id': '47', 'type': 'string', 'children': [], 'value': "'H2S'"}; {'id': '48', 'type': 'string', 'children': [], 'value': "'HCl'"}, {'id': '49', 'type': 'string', 'children': [], 'value': "'O2'"}; {'id': '50', 'type': 'if_statement', 'children': ['51', '54', '59']}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': 'is'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'candidates'}, {'id': '53', 'type': 'None', 'children': []}; {'id': '54', 'type': 'block', 'children': ['55']}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'candidates'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'sorted_candidates'}, {'id': '59', 'type': 'else_clause', 'children': ['60']}; {'id': '60', 'type': 'block', 'children': ['61', '73']}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'odd_candidates'}; {'id': '64', 'type': 'list_comprehension', 'children': ['65', '66', '69']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '66', 'type': 'for_in_clause', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'candidates'}, {'id': '69', 'type': 'if_clause', 'children': ['70']}; {'id': '70', 'type': 'comparison_operator', 'children': ['71', '72'], 'value': 'not'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'sorted_candidates'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'candidates'}; {'id': '76', 'type': 'binary_operator', 'children': ['77', '86', '87'], 'value': '+'}, {'id': '77', 'type': 'list_comprehension', 'children': ['78', '79', '82']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '79', 'type': 'for_in_clause', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'sorted_candidates'}; {'id': '82', 'type': 'if_clause', 'children': ['83']}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '85'], 'value': 'in'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'candidates'}; {'id': '86', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'odd_candidates'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'added_symbols'}, {'id': '91', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '92', 'type': 'for_statement', 'children': ['93', '94', '95']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'symbol'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'symbols'}, {'id': '95', 'type': 'block', 'children': ['96', '103']}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'added_symbols'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'symbol'}, {'id': '103', 'type': 'for_statement', 'children': ['104', '105', '106', '174']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'candidate'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'candidates'}; {'id': '106', 'type': 'block', 'children': ['107', '118']}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': '_symbols'}; {'id': '110', 'type': 'call', 'children': ['111', '116']}, {'id': '111', 'type': 'attribute', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'ase'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'symbols'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'string2symbols'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'candidate'}; {'id': '118', 'type': 'if_statement', 'children': ['119', '166']}, {'id': '119', 'type': 'boolean_operator', 'children': ['120', '158', '159'], 'value': 'and'}; {'id': '120', 'type': 'boolean_operator', 'children': ['121', '139', '140'], 'value': 'and'}, {'id': '121', 'type': 'comparison_operator', 'children': ['122', '126'], 'value': '<='}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'added_symbols'}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'binary_operator', 'children': ['130', '138'], 'value': '+'}; {'id': '130', 'type': 'call', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'references'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '137', 'type': 'argument_list', 'children': []}; {'id': '138', 'type': 'identifier', 'children': [], 'value': '_symbols'}, {'id': '139', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '140', 'type': 'comparison_operator', 'children': ['141', '154'], 'value': '<='}, {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '143', 'type': 'argument_list', 'children': ['144']}; {'id': '144', 'type': 'binary_operator', 'children': ['145', '153'], 'value': '+'}, {'id': '145', 'type': 'call', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'call', 'children': ['149', '152']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'references'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '152', 'type': 'argument_list', 'children': []}, {'id': '153', 'type': 'identifier', 'children': [], 'value': '_symbols'}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'symbols'}; {'id': '158', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '159', 'type': 'comparison_operator', 'children': ['160', '161'], 'value': 'not'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'candidate'}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'references'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '165', 'type': 'argument_list', 'children': []}; {'id': '166', 'type': 'block', 'children': ['167', '173']}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'assignment', 'children': ['169', '172']}, {'id': '169', 'type': 'subscript', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'references'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'symbol'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'candidate'}, {'id': '173', 'type': 'break_statement', 'children': []}; {'id': '174', 'type': 'else_clause', 'children': ['175']}, {'id': '175', 'type': 'block', 'children': ['176']}; {'id': '176', 'type': 'raise_statement', 'children': ['177']}, {'id': '177', 'type': 'call', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'UserWarning'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '190']}, {'id': '181', 'type': 'attribute', 'children': ['182', '189']}; {'id': '182', 'type': 'parenthesized_expression', 'children': ['183'], 'value': '()'}, {'id': '183', 'type': 'concatenated_string', 'children': ['184', '185', '186', '187', '188']}; {'id': '184', 'type': 'string', 'children': [], 'value': '"No candidate satisfied {symbol}. Add more candidates\\n"'}, {'id': '185', 'type': 'string', 'children': [], 'value': '" Symbols {symbols}\\n"'}; {'id': '186', 'type': 'string', 'children': [], 'value': '" _Symbols {_symbols}\\n"'}, {'id': '187', 'type': 'string', 'children': [], 'value': '" References {references}\\n"'}; {'id': '188', 'type': 'string', 'children': [], 'value': '" Candidates {candidates}\\n"'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '190', 'type': 'argument_list', 'children': ['191', '194', '197', '200', '203']}, {'id': '191', 'type': 'keyword_argument', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'symbol'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'symbol'}; {'id': '194', 'type': 'keyword_argument', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'symbols'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'symbols'}, {'id': '197', 'type': 'keyword_argument', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': '_symbols'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': '_symbols'}; {'id': '200', 'type': 'keyword_argument', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'candidates'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'candidates'}, {'id': '203', 'type': 'keyword_argument', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'references'}, {'id': '205', 'type': 'call', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '207', 'type': 'argument_list', 'children': ['208']}; {'id': '208', 'type': 'call', 'children': ['209', '212']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'references'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '212', 'type': 'argument_list', 'children': []}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'assignment', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'sorted_references'}; {'id': '216', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'assignment', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'references'}; {'id': '220', 'type': 'call', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'call', 'children': ['224', '227']}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'references'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '227', 'type': 'argument_list', 'children': []}; {'id': '228', 'type': 'return_statement', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'references'}

def construct_reference_system( symbols, candidates=None, options=None, ): if hasattr(options, 'no_hydrogen') and options.no_hydrogen: add_hydrogen = False else: add_hydrogen = True references = {} sorted_candidates = [ 'H2', 'H2O', 'NH3', 'N2', 'CH4', 'CO', 'H2S', 'HCl', 'O2'] if candidates is None: candidates = sorted_candidates else: odd_candidates = [c for c in candidates if c not in sorted_candidates] candidates = [c for c in sorted_candidates if c in candidates] \ + odd_candidates added_symbols = [] for symbol in symbols: added_symbols.append(symbol) for candidate in candidates: _symbols = ase.symbols.string2symbols(candidate) if set(added_symbols) <= set(list(references.keys()) + _symbols) \ and set(list(references.keys()) + _symbols) <= set(symbols) \ and candidate not in references.values(): references[symbol] = candidate break else: raise UserWarning(( "No candidate satisfied {symbol}. Add more candidates\n" " Symbols {symbols}\n" " _Symbols {_symbols}\n" " References {references}\n" " Candidates {candidates}\n" ).format( symbol=symbol, symbols=symbols, _symbols=_symbols, candidates=candidates, references=list(references.keys()), )) sorted_references = [] references = list(references.items()) return references

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'gen_triplets_master'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'wv_master'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'geometry'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'debugplot'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '11', 'type': 'block', 'children': ['12', '18', '24', '66', '79', '87', '94', '133', '142', '186', '195', '201', '211', '365']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'nlines_master'}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'wv_master'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'wv_previous'}, {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'wv_master'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'for_statement', 'children': ['25', '26', '31']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '30']}, {'id': '29', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'nlines_master'}, {'id': '31', 'type': 'block', 'children': ['32', '60']}; {'id': '32', 'type': 'if_statement', 'children': ['33', '38']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': '>='}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'wv_previous'}, {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'wv_master'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'raise_statement', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'binary_operator', 'children': ['44', '59'], 'value': '+'}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '53'], 'value': '+'}, {'id': '45', 'type': 'binary_operator', 'children': ['46', '52'], 'value': '+'}; {'id': '46', 'type': 'binary_operator', 'children': ['47', '48'], 'value': '+'}, {'id': '47', 'type': 'string', 'children': [], 'value': "'Wavelengths:\\n--> '"}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'wv_previous'}; {'id': '52', 'type': 'string', 'children': [], 'value': "'\\n--> '"}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'subscript', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'wv_master'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '59', 'type': 'string', 'children': [], 'value': "'\\nin master table are duplicated or not sorted'"}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'wv_previous'}, {'id': '63', 'type': 'subscript', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'wv_master'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'iter_comb_triplets'}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'itertools'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'combinations'}, {'id': '73', 'type': 'argument_list', 'children': ['74', '78']}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'nlines_master'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'triplets_master_list'}; {'id': '82', 'type': 'list_comprehension', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '84', 'type': 'for_in_clause', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'iter_comb_triplets'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'ntriplets_master'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'triplets_master_list'}; {'id': '94', 'type': 'if_statement', 'children': ['95', '105', '126']}, {'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': '=='}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'ntriplets_master'}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'comb'}, {'id': '99', 'type': 'argument_list', 'children': ['100', '101', '102']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'nlines_master'}, {'id': '101', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '102', 'type': 'keyword_argument', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'exact'}; {'id': '104', 'type': 'True', 'children': []}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'if_statement', 'children': ['107', '113']}, {'id': '107', 'type': 'comparison_operator', 'children': ['108', '112'], 'value': '>='}; {'id': '108', 'type': 'call', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'abs'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'debugplot'}; 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def gen_triplets_master(wv_master, geometry=None, debugplot=0): nlines_master = wv_master.size wv_previous = wv_master[0] for i in range(1, nlines_master): if wv_previous >= wv_master[i]: raise ValueError('Wavelengths:\n--> ' + str(wv_previous) + '\n--> ' + str(wv_master[i]) + '\nin master table are duplicated or not sorted') wv_previous = wv_master[i] iter_comb_triplets = itertools.combinations(range(nlines_master), 3) triplets_master_list = [val for val in iter_comb_triplets] ntriplets_master = len(triplets_master_list) if ntriplets_master == comb(nlines_master, 3, exact=True): if abs(debugplot) >= 10: print('>>> Total number of lines in master table:', nlines_master) print('>>> Number of triplets in master table...:', ntriplets_master) else: raise ValueError('Invalid number of combinations') ratios_master = np.zeros(ntriplets_master) for index, value in enumerate(triplets_master_list): i1, i2, i3 = value delta1 = wv_master[i2] - wv_master[i1] delta2 = wv_master[i3] - wv_master[i1] ratios_master[index] = delta1 / delta2 isort_ratios_master = np.argsort(ratios_master) ratios_master_sorted = ratios_master[isort_ratios_master] triplets_master_sorted_list = [triplets_master_list[i] for i in isort_ratios_master] if abs(debugplot) in [21, 22]: bins_in = np.linspace(0.0, 1.0, 41) hist, bins_out = np.histogram(ratios_master, bins=bins_in) from numina.array.display.matplotlib_qt import plt fig = plt.figure() ax = fig.add_subplot(111) width_hist = 0.8*(bins_out[1]-bins_out[0]) center = (bins_out[:-1]+bins_out[1:])/2 ax.bar(center, hist, align='center', width=width_hist) ax.set_xlabel('distance ratio in each triplet') ax.set_ylabel('Number of triplets') ax.set_title("Number of lines/triplets: " + str(nlines_master) + "/" + str(ntriplets_master)) set_window_geometry(geometry) pause_debugplot(debugplot, pltshow=True, tight_layout=True) return ntriplets_master, ratios_master_sorted, triplets_master_sorted_list

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{'id': '316', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '317', 'type': 'subscript', 'children': ['318', '319']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'wv_master'}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '320', 'type': 'expression_statement', 'children': ['321']}, {'id': '321', 'type': 'assignment', 'children': ['322', '325']}; {'id': '322', 'type': 'subscript', 'children': ['323', '324']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'wv_unused'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '325', 'type': 'False', 'children': []}; {'id': '326', 'type': 'else_clause', 'children': ['327']}, {'id': '327', 'type': 'block', 'children': ['328']}; {'id': '328', 'type': 'if_statement', 'children': ['329', '334']}, {'id': '329', 'type': 'comparison_operator', 'children': ['330', '331'], 'value': '<'}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'delta_wv2'}, {'id': '331', 'type': 'subscript', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'minimum_delta_wv'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '334', 'type': 'block', 'children': ['335']}, {'id': '335', 'type': 'expression_statement', 'children': ['336']}; {'id': '336', 'type': 'assignment', 'children': ['337', '340']}, {'id': '337', 'type': 'subscript', 'children': ['338', '339']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'wv_verified_all_peaks'}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '340', 'type': 'subscript', 'children': ['341', '342']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'wv_master'}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '343', 'type': 'return_statement', 'children': ['344']}

def match_wv_arrays(wv_master, wv_expected_all_peaks, delta_wv_max): wv_verified_all_peaks = np.zeros_like(wv_expected_all_peaks) wv_unused = np.ones_like(wv_expected_all_peaks, dtype=bool) minimum_delta_wv = np.ones_like(wv_expected_all_peaks, dtype=float) minimum_delta_wv *= np.infty for i in range(len(wv_master)): j = np.searchsorted(wv_expected_all_peaks, wv_master[i]) if j == 0: delta_wv = abs(wv_master[i] - wv_expected_all_peaks[j]) if delta_wv < delta_wv_max: if wv_unused[j]: wv_verified_all_peaks[j] = wv_master[i] wv_unused[j] = False minimum_delta_wv[j] = delta_wv else: if delta_wv < minimum_delta_wv[j]: wv_verified_all_peaks[j] = wv_master[i] minimum_delta_wv[j] = delta_wv elif j == len(wv_expected_all_peaks): delta_wv = abs(wv_master[i] - wv_expected_all_peaks[j-1]) if delta_wv < delta_wv_max: if wv_unused[j-1]: wv_verified_all_peaks[j-1] = wv_master[i] wv_unused[j-1] = False else: if delta_wv < minimum_delta_wv[j-1]: wv_verified_all_peaks[j-1] = wv_master[i] else: delta_wv1 = abs(wv_master[i] - wv_expected_all_peaks[j-1]) delta_wv2 = abs(wv_master[i] - wv_expected_all_peaks[j]) if delta_wv1 < delta_wv2: if delta_wv1 < delta_wv_max: if wv_unused[j-1]: wv_verified_all_peaks[j-1] = wv_master[i] wv_unused[j-1] = False else: if delta_wv1 < minimum_delta_wv[j-1]: wv_verified_all_peaks[j-1] = wv_master[i] else: if delta_wv2 < delta_wv_max: if wv_unused[j]: wv_verified_all_peaks[j] = wv_master[i] wv_unused[j] = False else: if delta_wv2 < minimum_delta_wv[j]: wv_verified_all_peaks[j] = wv_master[i] return wv_verified_all_peaks

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '41']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_publication_info'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29', '32', '35', '38']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'year'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'cnum'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'artid'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'page_end'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'page_start'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'journal_issue'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'journal_title'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'default_parameter', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'journal_volume'}; {'id': '28', 'type': 'None', 'children': []}, {'id': '29', 'type': 'default_parameter', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'pubinfo_freetext'}, {'id': '31', 'type': 'None', 'children': []}; {'id': '32', 'type': 'default_parameter', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'material'}; {'id': '34', 'type': 'None', 'children': []}, {'id': '35', 'type': 'default_parameter', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'parent_record'}, {'id': '37', 'type': 'None', 'children': []}; {'id': '38', 'type': 'default_parameter', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'parent_isbn'}; {'id': '40', 'type': 'None', 'children': []}, {'id': '41', 'type': 'block', 'children': ['42', '73', '77', '110', '128', '142', '172', '180']}; {'id': '42', 'type': 'if_statement', 'children': ['43', '59']}, {'id': '43', 'type': 'boolean_operator', 'children': ['44', '45'], 'value': 'and'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'journal_title'}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '47', 'type': 'generator_expression', 'children': ['48', '50']}; {'id': '48', 'type': 'not_operator', 'children': ['49']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '50', 'type': 'for_in_clause', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '52', 'type': 'tuple', 'children': ['53', '54', '55', '56', '57', '58']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'cnum'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'artid'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'journal_issue'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'journal_volume'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'page_start'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'page_end'}, {'id': '59', 'type': 'block', 'children': ['60', '72']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'add_public_note'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'string', 'children': [], 'value': "'Submitted to {}'"}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'journal_title'}; {'id': '72', 'type': 'return_statement', 'children': []}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'publication_item'}; {'id': '76', 'type': 'dictionary', 'children': []}, {'id': '77', 'type': 'for_statement', 'children': ['78', '79', '90']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '79', 'type': 'tuple', 'children': ['80', '81', '82', '83', '84', '85', '86', '87', '88', '89']}; {'id': '80', 'type': 'string', 'children': [], 'value': "'cnum'"}, {'id': '81', 'type': 'string', 'children': [], 'value': "'artid'"}; {'id': '82', 'type': 'string', 'children': [], 'value': "'page_end'"}, {'id': '83', 'type': 'string', 'children': [], 'value': "'page_start'"}; {'id': '84', 'type': 'string', 'children': [], 'value': "'journal_issue'"}, {'id': '85', 'type': 'string', 'children': [], 'value': "'journal_title'"}; {'id': '86', 'type': 'string', 'children': [], 'value': "'journal_volume'"}, {'id': '87', 'type': 'string', 'children': [], 'value': "'year'"}; {'id': '88', 'type': 'string', 'children': [], 'value': "'pubinfo_freetext'"}, {'id': '89', 'type': 'string', 'children': [], 'value': "'material'"}; {'id': '90', 'type': 'block', 'children': ['91']}, {'id': '91', 'type': 'if_statement', 'children': ['92', '99']}; {'id': '92', 'type': 'comparison_operator', 'children': ['93', '98'], 'value': 'is'}, {'id': '93', 'type': 'subscript', 'children': ['94', '97']}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'locals'}; {'id': '96', 'type': 'argument_list', 'children': []}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '98', 'type': 'None', 'children': []}, {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '105']}; {'id': '102', 'type': 'subscript', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'publication_item'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '105', 'type': 'subscript', 'children': ['106', '109']}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'locals'}; {'id': '108', 'type': 'argument_list', 'children': []}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '110', 'type': 'if_statement', 'children': ['111', '114']}, {'id': '111', 'type': 'comparison_operator', 'children': ['112', '113'], 'value': 'is'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'parent_record'}, {'id': '113', 'type': 'None', 'children': []}; {'id': '114', 'type': 'block', 'children': ['115', '122']}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'parent_item'}; {'id': '118', 'type': 'dictionary', 'children': ['119']}, {'id': '119', 'type': 'pair', 'children': ['120', '121']}; {'id': '120', 'type': 'string', 'children': [], 'value': "'$ref'"}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'parent_record'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '127']}; {'id': '124', 'type': 'subscript', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'publication_item'}; {'id': '126', 'type': 'string', 'children': [], 'value': "'parent_record'"}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'parent_item'}; {'id': '128', 'type': 'if_statement', 'children': ['129', '132']}, {'id': '129', 'type': 'comparison_operator', 'children': ['130', '131'], 'value': 'is'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'parent_isbn'}, {'id': '131', 'type': 'None', 'children': []}; {'id': '132', 'type': 'block', 'children': ['133']}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '138']}, {'id': '135', 'type': 'subscript', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'publication_item'}, {'id': '137', 'type': 'string', 'children': [], 'value': "'parent_isbn'"}; {'id': '138', 'type': 'call', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'normalize_isbn'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'parent_isbn'}; {'id': '142', 'type': 'if_statement', 'children': ['143', '146']}, {'id': '143', 'type': 'boolean_operator', 'children': ['144', '145'], 'value': 'and'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'page_start'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'page_end'}; {'id': '146', 'type': 'block', 'children': ['147']}, {'id': '147', 'type': 'try_statement', 'children': ['148', '166']}; {'id': '148', 'type': 'block', 'children': ['149']}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'add_number_of_pages'}; {'id': '154', 'type': 'argument_list', 'children': ['155']}, {'id': '155', 'type': 'binary_operator', 'children': ['156', '165'], 'value': '+'}; {'id': '156', 'type': 'binary_operator', 'children': ['157', '161'], 'value': '-'}, {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'page_end'}, {'id': '161', 'type': 'call', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '163', 'type': 'argument_list', 'children': ['164']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'page_start'}, {'id': '165', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '166', 'type': 'except_clause', 'children': ['167', '170']}, {'id': '167', 'type': 'tuple', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '170', 'type': 'block', 'children': ['171']}, {'id': '171', 'type': 'pass_statement', 'children': []}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'call', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': '_append_to'}, {'id': '177', 'type': 'argument_list', 'children': ['178', '179']}; {'id': '178', 'type': 'string', 'children': [], 'value': "'publication_info'"}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'publication_item'}; {'id': '180', 'type': 'if_statement', 'children': ['181', '189']}, {'id': '181', 'type': 'call', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'is_citeable'}, {'id': '183', 'type': 'argument_list', 'children': ['184']}; {'id': '184', 'type': 'subscript', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'record'}; {'id': '188', 'type': 'string', 'children': [], 'value': "'publication_info'"}, {'id': '189', 'type': 'block', 'children': ['190']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'set_citeable'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}

def add_publication_info( self, year=None, cnum=None, artid=None, page_end=None, page_start=None, journal_issue=None, journal_title=None, journal_volume=None, pubinfo_freetext=None, material=None, parent_record=None, parent_isbn=None, ): if journal_title and all( not field for field in (cnum, artid, journal_issue, journal_volume, page_start, page_end)): self.add_public_note('Submitted to {}'.format(journal_title)) return publication_item = {} for key in ('cnum', 'artid', 'page_end', 'page_start', 'journal_issue', 'journal_title', 'journal_volume', 'year', 'pubinfo_freetext', 'material'): if locals()[key] is not None: publication_item[key] = locals()[key] if parent_record is not None: parent_item = {'$ref': parent_record} publication_item['parent_record'] = parent_item if parent_isbn is not None: publication_item['parent_isbn'] = normalize_isbn(parent_isbn) if page_start and page_end: try: self.add_number_of_pages( int(page_end) - int(page_start) + 1 ) except (TypeError, ValueError): pass self._append_to('publication_info', publication_item) if is_citeable(self.record['publication_info']): self.set_citeable(True)

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute_operation'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10', '11', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'file1'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'file2'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'display'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'args_z1z2'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'args_bbox'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'args_keystitle'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'args_geometry'}, {'id': '13', 'type': 'block', 'children': ['14', '50', '56', '62', '89', '125', '131', '137', '164', '174', '184', '240', '257', '267']}; {'id': '14', 'type': 'with_statement', 'children': ['15', '26']}, {'id': '15', 'type': 'with_clause', 'children': ['16']}; {'id': '16', 'type': 'with_item', 'children': ['17']}, {'id': '17', 'type': 'as_pattern', 'children': ['18', '24']}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'fits'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'file1'}; {'id': '24', 'type': 'as_pattern_target', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'hdulist'}; {'id': '26', 'type': 'block', 'children': ['27', '35']}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'image_header1'}; {'id': '30', 'type': 'attribute', 'children': ['31', '34']}, {'id': '31', 'type': 'subscript', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'hdulist'}, {'id': '33', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'image1'}; {'id': '38', 'type': 'call', 'children': ['39', '46']}, {'id': '39', 'type': 'attribute', 'children': ['40', '45']}; {'id': '40', 'type': 'attribute', 'children': ['41', '44']}, {'id': '41', 'type': 'subscript', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'hdulist'}, {'id': '43', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'astype'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'naxis1'}, {'id': '53', 'type': 'subscript', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'image_header1'}, {'id': '55', 'type': 'string', 'children': [], 'value': "'naxis1'"}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'naxis2'}, {'id': '59', 'type': 'subscript', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'image_header1'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'naxis2'"}; {'id': '62', 'type': 'if_statement', 'children': ['63', '66']}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '65'], 'value': '=='}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'display'}, {'id': '65', 'type': 'string', 'children': [], 'value': "'all'"}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'ximshow_file'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '74', '77', '80', '83', '86']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'file1'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '74', 'type': 'keyword_argument', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'args_z1z2'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'args_z1z2'}, {'id': '77', 'type': 'keyword_argument', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'args_bbox'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'args_bbox'}; {'id': '80', 'type': 'keyword_argument', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'args_keystitle'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'args_keystitle'}, {'id': '83', 'type': 'keyword_argument', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'args_geometry'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'args_geometry'}; {'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'debugplot'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '12'}, {'id': '89', 'type': 'with_statement', 'children': ['90', '101']}; {'id': '90', 'type': 'with_clause', 'children': ['91']}, {'id': '91', 'type': 'with_item', 'children': ['92']}; {'id': '92', 'type': 'as_pattern', 'children': ['93', '99']}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'fits'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'file2'}, {'id': '99', 'type': 'as_pattern_target', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'hdulist'}, {'id': '101', 'type': 'block', 'children': ['102', '110']}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'image_header2'}, {'id': '105', 'type': 'attribute', 'children': ['106', '109']}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'hdulist'}; {'id': '108', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'assignment', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'image2'}, {'id': '113', 'type': 'call', 'children': ['114', '121']}; {'id': '114', 'type': 'attribute', 'children': ['115', '120']}, {'id': '115', 'type': 'attribute', 'children': ['116', '119']}; {'id': '116', 'type': 'subscript', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'hdulist'}; {'id': '118', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'astype'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'assignment', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'naxis1_'}; {'id': '128', 'type': 'subscript', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'image_header2'}; {'id': '130', 'type': 'string', 'children': [], 'value': "'naxis1'"}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'assignment', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'naxis2_'}; {'id': '134', 'type': 'subscript', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'image_header2'}; {'id': '136', 'type': 'string', 'children': [], 'value': "'naxis2'"}, {'id': '137', 'type': 'if_statement', 'children': ['138', '141']}; {'id': '138', 'type': 'comparison_operator', 'children': ['139', '140'], 'value': '=='}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'display'}; {'id': '140', 'type': 'string', 'children': [], 'value': "'all'"}, {'id': '141', 'type': 'block', 'children': ['142']}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'ximshow_file'}, {'id': '145', 'type': 'argument_list', 'children': ['146', '149', '152', '155', '158', '161']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'file2'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '149', 'type': 'keyword_argument', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'args_z1z2'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'args_z1z2'}; {'id': '152', 'type': 'keyword_argument', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'args_bbox'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'args_bbox'}, {'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'args_keystitle'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'args_keystitle'}; {'id': '158', 'type': 'keyword_argument', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'args_geometry'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'args_geometry'}, {'id': '161', 'type': 'keyword_argument', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'debugplot'}, {'id': '163', 'type': 'integer', 'children': [], 'value': '12'}; {'id': '164', 'type': 'if_statement', 'children': ['165', '168']}, {'id': '165', 'type': 'comparison_operator', 'children': ['166', '167'], 'value': '!='}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'naxis1'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'naxis1_'}; {'id': '168', 'type': 'block', 'children': ['169']}, {'id': '169', 'type': 'raise_statement', 'children': ['170']}; {'id': '170', 'type': 'call', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '172', 'type': 'argument_list', 'children': ['173']}, {'id': '173', 'type': 'string', 'children': [], 'value': '"NAXIS1 values are different."'}; {'id': '174', 'type': 'if_statement', 'children': ['175', '178']}, {'id': '175', 'type': 'comparison_operator', 'children': ['176', '177'], 'value': '!='}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'naxis2'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'naxis2_'}; {'id': '178', 'type': 'block', 'children': ['179']}, {'id': '179', 'type': 'raise_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '182', 'type': 'argument_list', 'children': ['183']}, {'id': '183', 'type': 'string', 'children': [], 'value': '"NAXIS2 values are different."'}; {'id': '184', 'type': 'if_statement', 'children': ['185', '188', '195', '206', '217', '228']}, {'id': '185', 'type': 'comparison_operator', 'children': ['186', '187'], 'value': '=='}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '187', 'type': 'string', 'children': [], 'value': '"+"'}; {'id': '188', 'type': 'block', 'children': ['189']}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'assignment', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'solution'}; {'id': '192', 'type': 'binary_operator', 'children': ['193', '194'], 'value': '+'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'image1'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'image2'}, {'id': '195', 'type': 'elif_clause', 'children': ['196', '199']}; {'id': '196', 'type': 'comparison_operator', 'children': ['197', '198'], 'value': '=='}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '198', 'type': 'string', 'children': [], 'value': '"-"'}, {'id': '199', 'type': 'block', 'children': ['200']}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'assignment', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'solution'}, {'id': '203', 'type': 'binary_operator', 'children': ['204', '205'], 'value': '-'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'image1'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'image2'}; {'id': '206', 'type': 'elif_clause', 'children': ['207', '210']}, {'id': '207', 'type': 'comparison_operator', 'children': ['208', '209'], 'value': '=='}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'operation'}, {'id': '209', 'type': 'string', 'children': [], 'value': '"*"'}; {'id': '210', 'type': 'block', 'children': ['211']}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'solution'}; {'id': '214', 'type': 'binary_operator', 'children': ['215', '216'], 'value': '*'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'image1'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'image2'}, {'id': '217', 'type': 'elif_clause', 'children': ['218', '221']}; {'id': '218', 'type': 'comparison_operator', 'children': ['219', '220'], 'value': '=='}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '220', 'type': 'string', 'children': [], 'value': '"/"'}, {'id': '221', 'type': 'block', 'children': ['222']}; {'id': '222', 'type': 'expression_statement', 'children': ['223']}, {'id': '223', 'type': 'assignment', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'solution'}, {'id': '225', 'type': 'binary_operator', 'children': ['226', '227'], 'value': '/'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'image1'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'image2'}; {'id': '228', 'type': 'else_clause', 'children': ['229']}, {'id': '229', 'type': 'block', 'children': ['230']}; {'id': '230', 'type': 'raise_statement', 'children': ['231']}, {'id': '231', 'type': 'call', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '233', 'type': 'argument_list', 'children': ['234']}; {'id': '234', 'type': 'binary_operator', 'children': ['235', '236'], 'value': '+'}, {'id': '235', 'type': 'string', 'children': [], 'value': '"Unexpected operation="'}; {'id': '236', 'type': 'call', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '238', 'type': 'argument_list', 'children': ['239']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'operation'}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'assignment', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'hdu'}, {'id': '243', 'type': 'call', 'children': ['244', '247']}; {'id': '244', 'type': 'attribute', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'fits'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'PrimaryHDU'}, {'id': '247', 'type': 'argument_list', 'children': ['248', '256']}; {'id': '248', 'type': 'call', 'children': ['249', '252']}, {'id': '249', 'type': 'attribute', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'solution'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'astype'}; {'id': '252', 'type': 'argument_list', 'children': ['253']}, {'id': '253', 'type': 'attribute', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'image_header1'}, {'id': '257', 'type': 'expression_statement', 'children': ['258']}; {'id': '258', 'type': 'call', 'children': ['259', '262']}, {'id': '259', 'type': 'attribute', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'hdu'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'writeto'}; {'id': '262', 'type': 'argument_list', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '264', 'type': 'keyword_argument', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'overwrite'}; {'id': '266', 'type': 'True', 'children': []}, {'id': '267', 'type': 'if_statement', 'children': ['268', '273']}; {'id': '268', 'type': 'comparison_operator', 'children': ['269', '270'], 'value': 'in'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'display'}; {'id': '270', 'type': 'list', 'children': ['271', '272'], 'value': "['all', 'result']"}, {'id': '271', 'type': 'string', 'children': [], 'value': "'all'"}; {'id': '272', 'type': 'string', 'children': [], 'value': "'result'"}, {'id': '273', 'type': 'block', 'children': ['274']}; {'id': '274', 'type': 'expression_statement', 'children': ['275']}, {'id': '275', 'type': 'call', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'ximshow_file'}, {'id': '277', 'type': 'argument_list', 'children': ['278', '281', '284', '287', '290', '293']}; {'id': '278', 'type': 'attribute', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '281', 'type': 'keyword_argument', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'args_z1z2'}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'args_z1z2'}; {'id': '284', 'type': 'keyword_argument', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'args_bbox'}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'args_bbox'}, {'id': '287', 'type': 'keyword_argument', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'args_keystitle'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'args_keystitle'}; {'id': '290', 'type': 'keyword_argument', 'children': ['291', '292']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'args_geometry'}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'args_geometry'}, {'id': '293', 'type': 'keyword_argument', 'children': ['294', '295']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'debugplot'}, {'id': '295', 'type': 'integer', 'children': [], 'value': '12'}

def compute_operation(file1, file2, operation, output, display, args_z1z2, args_bbox, args_keystitle, args_geometry): with fits.open(file1) as hdulist: image_header1 = hdulist[0].header image1 = hdulist[0].data.astype(np.float) naxis1 = image_header1['naxis1'] naxis2 = image_header1['naxis2'] if display == 'all': ximshow_file(file1.name, args_z1z2=args_z1z2, args_bbox=args_bbox, args_keystitle=args_keystitle, args_geometry=args_geometry, debugplot=12) with fits.open(file2) as hdulist: image_header2 = hdulist[0].header image2 = hdulist[0].data.astype(np.float) naxis1_ = image_header2['naxis1'] naxis2_ = image_header2['naxis2'] if display == 'all': ximshow_file(file2.name, args_z1z2=args_z1z2, args_bbox=args_bbox, args_keystitle=args_keystitle, args_geometry=args_geometry, debugplot=12) if naxis1 != naxis1_: raise ValueError("NAXIS1 values are different.") if naxis2 != naxis2_: raise ValueError("NAXIS2 values are different.") if operation == "+": solution = image1 + image2 elif operation == "-": solution = image1 - image2 elif operation == "*": solution = image1 * image2 elif operation == "/": solution = image1 / image2 else: raise ValueError("Unexpected operation=" + str(operation)) hdu = fits.PrimaryHDU(solution.astype(np.float), image_header1) hdu.writeto(output, overwrite=True) if display in ['all', 'result']: ximshow_file(output.name, args_z1z2=args_z1z2, args_bbox=args_bbox, args_keystitle=args_keystitle, args_geometry=args_geometry, debugplot=12)

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{'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'ndarray'}, {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'copy'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '31', 'type': 'else_clause', 'children': ['32']}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'if_statement', 'children': ['34', '40', '50']}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '39'], 'value': 'is'}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '50', 'type': 'else_clause', 'children': ['51']}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'raise_statement', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'binary_operator', 'children': ['57', '63'], 'value': '+'}, {'id': '57', 'type': 'binary_operator', 'children': ['58', '59'], 'value': '+'}; {'id': '58', 'type': 'string', 'children': [], 'value': "'x='"}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '63', 'type': 'string', 'children': [], 'value': "' must be a numpy.ndarray'"}; {'id': '64', 'type': 'if_statement', 'children': ['65', '70']}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '69'], 'value': 'is'}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'ndim'}, {'id': '69', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'raise_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'binary_operator', 'children': ['76', '84'], 'value': '+'}; {'id': '76', 'type': 'binary_operator', 'children': ['77', '78'], 'value': '+'}, {'id': '77', 'type': 'string', 'children': [], 'value': "'xx.dim='"}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'ndim'}; {'id': '84', 'type': 'string', 'children': [], 'value': "' must be 1'"}, {'id': '85', 'type': 'if_statement', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'rm_nan'}, {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '91', 'type': 'subscript', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'logical_not'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '102']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'isnan'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'npoints'}, {'id': '107', 'type': 'call', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '114', 'type': 'comparison_operator', 'children': ['115', '116'], 'value': '>'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'npoints'}; {'id': '116', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'assignment', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '120', 'type': 'dictionary', 'children': ['121', '124', '135', '147', '159', '170', '182', '193', '204', '213', '225']}, {'id': '121', 'type': 'pair', 'children': ['122', '123']}; {'id': '122', 'type': 'string', 'children': [], 'value': "'npoints'"}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'npoints'}; {'id': '124', 'type': 'pair', 'children': ['125', '126']}, {'id': '125', 'type': 'string', 'children': [], 'value': "'minimum'"}; {'id': '126', 'type': 'conditional_expression', 'children': ['127', '133', '134'], 'value': 'if'}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '134', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '135', 'type': 'pair', 'children': ['136', '137']}; {'id': '136', 'type': 'string', 'children': [], 'value': "'percentile25'"}, {'id': '137', 'type': 'conditional_expression', 'children': ['138', '145', '146'], 'value': 'if'}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'percentile'}; {'id': '142', 'type': 'argument_list', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '144', 'type': 'integer', 'children': [], 'value': '25'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '146', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '147', 'type': 'pair', 'children': ['148', '149']}; {'id': '148', 'type': 'string', 'children': [], 'value': "'median'"}, {'id': '149', 'type': 'conditional_expression', 'children': ['150', '157', '158'], 'value': 'if'}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'percentile'}; {'id': '154', 'type': 'argument_list', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '156', 'type': 'integer', 'children': [], 'value': '50'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '158', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '159', 'type': 'pair', 'children': ['160', '161']}; {'id': '160', 'type': 'string', 'children': [], 'value': "'mean'"}, {'id': '161', 'type': 'conditional_expression', 'children': ['162', '168', '169'], 'value': 'if'}; {'id': '162', 'type': 'call', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'mean'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'ok'}, {'id': '169', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '170', 'type': 'pair', 'children': ['171', '172']}, {'id': '171', 'type': 'string', 'children': [], 'value': "'percentile75'"}; {'id': '172', 'type': 'conditional_expression', 'children': ['173', '180', '181'], 'value': 'if'}, {'id': '173', 'type': 'call', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'percentile'}, {'id': '177', 'type': 'argument_list', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '179', 'type': 'integer', 'children': [], 'value': '75'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'ok'}, {'id': '181', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '182', 'type': 'pair', 'children': ['183', '184']}, {'id': '183', 'type': 'string', 'children': [], 'value': "'maximum'"}; {'id': '184', 'type': 'conditional_expression', 'children': ['185', '191', '192'], 'value': 'if'}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '192', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '193', 'type': 'pair', 'children': ['194', '195']}; {'id': '194', 'type': 'string', 'children': [], 'value': "'std'"}, {'id': '195', 'type': 'conditional_expression', 'children': ['196', '202', '203'], 'value': 'if'}; {'id': '196', 'type': 'call', 'children': ['197', '200']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'std'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'ok'}, {'id': '203', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '204', 'type': 'pair', 'children': ['205', '206']}, {'id': '205', 'type': 'string', 'children': [], 'value': "'robust_std'"}; {'id': '206', 'type': 'conditional_expression', 'children': ['207', '211', '212'], 'value': 'if'}, {'id': '207', 'type': 'call', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'robust_std'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'xx'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '212', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '213', 'type': 'pair', 'children': ['214', '215']}; {'id': '214', 'type': 'string', 'children': [], 'value': "'percentile15'"}, {'id': '215', 'type': 'conditional_expression', 'children': ['216', '223', '224'], 'value': 'if'}; {'id': '216', 'type': 'call', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'percentile'}; {'id': '220', 'type': 'argument_list', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '222', 'type': 'float', 'children': [], 'value': '15.86553'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '224', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '225', 'type': 'pair', 'children': ['226', '227']}; {'id': '226', 'type': 'string', 'children': [], 'value': "'percentile84'"}, {'id': '227', 'type': 'conditional_expression', 'children': ['228', '235', '236'], 'value': 'if'}; {'id': '228', 'type': 'call', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'percentile'}; {'id': '232', 'type': 'argument_list', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'xx'}; {'id': '234', 'type': 'float', 'children': [], 'value': '84.13447'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'ok'}; {'id': '236', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '237', 'type': 'if_statement', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '239', 'type': 'block', 'children': ['240', '245', '250', '255', '263', '271', '279', '287', '295', '303', '311', '316', '324', '332', '340', '348']}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'call', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '243', 'type': 'argument_list', 'children': ['244']}; {'id': '244', 'type': 'string', 'children': [], 'value': "'>>> ========================================'"}, {'id': '245', 'type': 'expression_statement', 'children': ['246']}; {'id': '246', 'type': 'call', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '248', 'type': 'argument_list', 'children': ['249']}, {'id': '249', 'type': 'string', 'children': [], 'value': "'>>> STATISTICAL SUMMARY:'"}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'call', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '253', 'type': 'argument_list', 'children': ['254']}; {'id': '254', 'type': 'string', 'children': [], 'value': "'>>> ----------------------------------------'"}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'call', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '258', 'type': 'argument_list', 'children': ['259', '260']}, {'id': '259', 'type': 'string', 'children': [], 'value': "'>>> Number of points.........:'"}; {'id': '260', 'type': 'subscript', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '262', 'type': 'string', 'children': [], 'value': "'npoints'"}, {'id': '263', 'type': 'expression_statement', 'children': ['264']}; {'id': '264', 'type': 'call', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '266', 'type': 'argument_list', 'children': ['267', '268']}, {'id': '267', 'type': 'string', 'children': [], 'value': "'>>> Minimum..................:'"}; {'id': '268', 'type': 'subscript', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '270', 'type': 'string', 'children': [], 'value': "'minimum'"}, {'id': '271', 'type': 'expression_statement', 'children': ['272']}; {'id': '272', 'type': 'call', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '274', 'type': 'argument_list', 'children': ['275', '276']}, {'id': '275', 'type': 'string', 'children': [], 'value': "'>>> 1st Quartile.............:'"}; {'id': '276', 'type': 'subscript', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '278', 'type': 'string', 'children': [], 'value': "'percentile25'"}, {'id': '279', 'type': 'expression_statement', 'children': ['280']}; {'id': '280', 'type': 'call', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '282', 'type': 'argument_list', 'children': ['283', '284']}, {'id': '283', 'type': 'string', 'children': [], 'value': "'>>> Median...................:'"}; {'id': '284', 'type': 'subscript', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '286', 'type': 'string', 'children': [], 'value': "'median'"}, {'id': '287', 'type': 'expression_statement', 'children': ['288']}; {'id': '288', 'type': 'call', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '290', 'type': 'argument_list', 'children': ['291', '292']}, {'id': '291', 'type': 'string', 'children': [], 'value': "'>>> Mean.....................:'"}; {'id': '292', 'type': 'subscript', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '294', 'type': 'string', 'children': [], 'value': "'mean'"}, {'id': '295', 'type': 'expression_statement', 'children': ['296']}; {'id': '296', 'type': 'call', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '298', 'type': 'argument_list', 'children': ['299', '300']}, {'id': '299', 'type': 'string', 'children': [], 'value': "'>>> 3rd Quartile.............:'"}; {'id': '300', 'type': 'subscript', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '302', 'type': 'string', 'children': [], 'value': "'percentile75'"}, {'id': '303', 'type': 'expression_statement', 'children': ['304']}; {'id': '304', 'type': 'call', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '306', 'type': 'argument_list', 'children': ['307', '308']}, {'id': '307', 'type': 'string', 'children': [], 'value': "'>>> Maximum..................:'"}; {'id': '308', 'type': 'subscript', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '310', 'type': 'string', 'children': [], 'value': "'maximum'"}, {'id': '311', 'type': 'expression_statement', 'children': ['312']}; {'id': '312', 'type': 'call', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '314', 'type': 'argument_list', 'children': ['315']}, {'id': '315', 'type': 'string', 'children': [], 'value': "'>>> ----------------------------------------'"}; {'id': '316', 'type': 'expression_statement', 'children': ['317']}, {'id': '317', 'type': 'call', 'children': ['318', '319']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '319', 'type': 'argument_list', 'children': ['320', '321']}; {'id': '320', 'type': 'string', 'children': [], 'value': "'>>> Standard deviation.......:'"}, {'id': '321', 'type': 'subscript', 'children': ['322', '323']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '323', 'type': 'string', 'children': [], 'value': "'std'"}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'call', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '327', 'type': 'argument_list', 'children': ['328', '329']}; {'id': '328', 'type': 'string', 'children': [], 'value': "'>>> Robust standard deviation:'"}, {'id': '329', 'type': 'subscript', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '331', 'type': 'string', 'children': [], 'value': "'robust_std'"}; {'id': '332', 'type': 'expression_statement', 'children': ['333']}, {'id': '333', 'type': 'call', 'children': ['334', '335']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '335', 'type': 'argument_list', 'children': ['336', '337']}; {'id': '336', 'type': 'string', 'children': [], 'value': "'>>> 0.1586553 percentile.....:'"}, {'id': '337', 'type': 'subscript', 'children': ['338', '339']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '339', 'type': 'string', 'children': [], 'value': "'percentile15'"}; {'id': '340', 'type': 'expression_statement', 'children': ['341']}, {'id': '341', 'type': 'call', 'children': ['342', '343']}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '343', 'type': 'argument_list', 'children': ['344', '345']}; {'id': '344', 'type': 'string', 'children': [], 'value': "'>>> 0.8413447 percentile.....:'"}, {'id': '345', 'type': 'subscript', 'children': ['346', '347']}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '347', 'type': 'string', 'children': [], 'value': "'percentile84'"}; {'id': '348', 'type': 'expression_statement', 'children': ['349']}, {'id': '349', 'type': 'call', 'children': ['350', '351']}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '351', 'type': 'argument_list', 'children': ['352']}; {'id': '352', 'type': 'string', 'children': [], 'value': "'>>> ========================================'"}, {'id': '353', 'type': 'return_statement', 'children': ['354']}

def summary(x, rm_nan=False, debug=False): if type(x) is np.ndarray: xx = np.copy(x) else: if type(x) is list: xx = np.array(x) else: raise ValueError('x=' + str(x) + ' must be a numpy.ndarray') if xx.ndim is not 1: raise ValueError('xx.dim=' + str(xx.ndim) + ' must be 1') if rm_nan: xx = xx[np.logical_not(np.isnan(xx))] npoints = len(xx) ok = npoints > 0 result = { 'npoints' : npoints, 'minimum' : np.min(xx) if ok else 0, 'percentile25' : np.percentile(xx, 25) if ok else 0, 'median' : np.percentile(xx, 50) if ok else 0, 'mean' : np.mean(xx) if ok else 0, 'percentile75': np.percentile(xx, 75) if ok else 0, 'maximum' : np.max(xx) if ok else 0, 'std': np.std(xx) if ok else 0, 'robust_std' : robust_std(xx) if ok else 0, 'percentile15': np.percentile(xx, 15.86553) if ok else 0, 'percentile84': np.percentile(xx, 84.13447) if ok else 0 } if debug: print('>>> ========================================') print('>>> STATISTICAL SUMMARY:') print('>>> ----------------------------------------') print('>>> Number of points.........:', result['npoints']) print('>>> Minimum..................:', result['minimum']) print('>>> 1st Quartile.............:', result['percentile25']) print('>>> Median...................:', result['median']) print('>>> Mean.....................:', result['mean']) print('>>> 3rd Quartile.............:', result['percentile75']) print('>>> Maximum..................:', result['maximum']) print('>>> ----------------------------------------') print('>>> Standard deviation.......:', result['std']) print('>>> Robust standard deviation:', result['robust_std']) print('>>> 0.1586553 percentile.....:', result['percentile15']) print('>>> 0.8413447 percentile.....:', result['percentile84']) print('>>> ========================================') return result

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{'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'nmed'}, {'id': '65', 'type': 'binary_operator', 'children': ['66', '67'], 'value': '//'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'nwinwidth'}, {'id': '67', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '72']}, {'id': '69', 'type': 'comparison_operator', 'children': ['70', '71'], 'value': '>='}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'debugplot'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '72', 'type': 'block', 'children': ['73', '79', '85', '91', '97']}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '76', 'type': 'argument_list', 'children': ['77', '78']}, {'id': '77', 'type': 'string', 'children': [], 'value': "'find_peaks_spectrum> sx shape......:'"}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'sx_shape'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '82', 'type': 'argument_list', 'children': ['83', '84']}, {'id': '83', 'type': 'string', 'children': [], 'value': "'find_peaks_spectrum> nwinwidth.....:'"}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'nwinwidth'}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '88', 'type': 'argument_list', 'children': ['89', '90']}, {'id': '89', 'type': 'string', 'children': [], 'value': "'find_peaks_spectrum> nmed..........:'"}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'nmed'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'print'}; 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{'id': '168', 'type': 'comparison_operator', 'children': ['169', '176'], 'value': '>'}, {'id': '169', 'type': 'subscript', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'sx'}, {'id': '171', 'type': 'binary_operator', 'children': ['172', '175'], 'value': '+'}; {'id': '172', 'type': 'binary_operator', 'children': ['173', '174'], 'value': '-'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'nmed'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '176', 'type': 'subscript', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'sx'}; {'id': '178', 'type': 'binary_operator', 'children': ['179', '184'], 'value': '+'}, {'id': '179', 'type': 'binary_operator', 'children': ['180', '183'], 'value': '+'}; {'id': '180', 'type': 'binary_operator', 'children': ['181', '182'], 'value': '-'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'nmed'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '184', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '185', 'type': 'block', 'children': ['186']}; {'id': '186', 'type': 'expression_statement', 'children': ['187']}, {'id': '187', 'type': 'assignment', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'peak_ok'}, {'id': '189', 'type': 'False', 'children': []}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'augmented_assignment', 'children': ['192', '193'], 'value': '+='}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '193', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'assignment', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'loop'}, {'id': '197', 'type': 'boolean_operator', 'children': ['198', '202'], 'value': 'and'}; {'id': '198', 'type': 'parenthesized_expression', 'children': ['199'], 'value': '()'}, {'id': '199', 'type': 'comparison_operator', 'children': ['200', '201'], 'value': '<'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'nmed'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'peak_ok'}, {'id': '203', 'type': 'if_statement', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'peak_ok'}, {'id': '205', 'type': 'block', 'children': ['206', '212', '216']}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'assignment', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '209', 'type': 'binary_operator', 'children': ['210', '211'], 'value': '+'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'nmed'}, {'id': '211', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '212', 'type': 'expression_statement', 'children': ['213']}, {'id': '213', 'type': 'assignment', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'loop'}, {'id': '215', 'type': 'True', 'children': []}; {'id': '216', 'type': 'while_statement', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'loop'}; {'id': '218', 'type': 'block', 'children': ['219', '242', '246']}, {'id': '219', 'type': 'if_statement', 'children': ['220', '237']}; {'id': '220', 'type': 'comparison_operator', 'children': ['221', '230'], 'value': '<'}, {'id': '221', 'type': 'subscript', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'sx'}, {'id': '223', 'type': 'binary_operator', 'children': ['224', '229'], 'value': '-'}; {'id': '224', 'type': 'binary_operator', 'children': ['225', '228'], 'value': '+'}, {'id': '225', 'type': 'binary_operator', 'children': ['226', '227'], 'value': '-'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'nmed'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '229', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '230', 'type': 'subscript', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'sx'}; {'id': '232', 'type': 'binary_operator', 'children': ['233', '236'], 'value': '+'}, {'id': '233', 'type': 'binary_operator', 'children': ['234', '235'], 'value': '-'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'nmed'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '237', 'type': 'block', 'children': ['238']}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'assignment', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'peak_ok'}, {'id': '241', 'type': 'False', 'children': []}; {'id': '242', 'type': 'expression_statement', 'children': ['243']}, {'id': '243', 'type': 'augmented_assignment', 'children': ['244', '245'], 'value': '+='}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '245', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '246', 'type': 'expression_statement', 'children': ['247']}, {'id': '247', 'type': 'assignment', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'loop'}, {'id': '249', 'type': 'boolean_operator', 'children': ['250', '254'], 'value': 'and'}; {'id': '250', 'type': 'parenthesized_expression', 'children': ['251'], 'value': '()'}, {'id': '251', 'type': 'comparison_operator', 'children': ['252', '253'], 'value': '<'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'nwinwidth'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'peak_ok'}, {'id': '255', 'type': 'if_statement', 'children': ['256', '257', '271']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'peak_ok'}, {'id': '257', 'type': 'block', 'children': ['258', '265']}; {'id': '258', 'type': 'expression_statement', 'children': ['259']}, {'id': '259', 'type': 'call', 'children': ['260', '263']}; {'id': '260', 'type': 'attribute', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'xpeaks'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '263', 'type': 'argument_list', 'children': ['264']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '265', 'type': 'expression_statement', 'children': ['266']}; {'id': '266', 'type': 'augmented_assignment', 'children': ['267', '268'], 'value': '+='}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '268', 'type': 'binary_operator', 'children': ['269', '270'], 'value': '-'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'nwinwidth'}; {'id': '270', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '271', 'type': 'else_clause', 'children': ['272']}; {'id': '272', 'type': 'block', 'children': ['273']}, {'id': '273', 'type': 'expression_statement', 'children': ['274']}; {'id': '274', 'type': 'augmented_assignment', 'children': ['275', '276'], 'value': '+='}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '276', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '277', 'type': 'else_clause', 'children': ['278']}; {'id': '278', 'type': 'block', 'children': ['279']}, {'id': '279', 'type': 'expression_statement', 'children': ['280']}; {'id': '280', 'type': 'augmented_assignment', 'children': ['281', '282'], 'value': '+='}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '282', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'assignment', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'ixpeaks'}; {'id': '286', 'type': 'call', 'children': ['287', '290']}, {'id': '287', 'type': 'attribute', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'xpeaks'}; {'id': '292', 'type': 'if_statement', 'children': ['293', '296']}, {'id': '293', 'type': 'comparison_operator', 'children': ['294', '295'], 'value': '>='}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'debugplot'}, {'id': '295', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '296', 'type': 'block', 'children': ['297', '306']}, {'id': '297', 'type': 'expression_statement', 'children': ['298']}; {'id': '298', 'type': 'call', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '300', 'type': 'argument_list', 'children': ['301', '302']}, {'id': '301', 'type': 'string', 'children': [], 'value': "'find_peaks_spectrum> number of peaks found:'"}; {'id': '302', 'type': 'call', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '304', 'type': 'argument_list', 'children': ['305']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'ixpeaks'}; {'id': '306', 'type': 'expression_statement', 'children': ['307']}, {'id': '307', 'type': 'call', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '309', 'type': 'argument_list', 'children': ['310']}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'ixpeaks'}, {'id': '311', 'type': 'return_statement', 'children': ['312']}

def find_peaks_spectrum(sx, nwinwidth, threshold=0, debugplot=0): if type(sx) is not np.ndarray: raise ValueError("sx=" + str(sx) + " must be a numpy.ndarray") elif sx.ndim is not 1: raise ValueError("sx.ndim=" + str(sx.ndim) + " must be 1") sx_shape = sx.shape nmed = nwinwidth//2 if debugplot >= 10: print('find_peaks_spectrum> sx shape......:', sx_shape) print('find_peaks_spectrum> nwinwidth.....:', nwinwidth) print('find_peaks_spectrum> nmed..........:', nmed) print('find_peaks_spectrum> data_threshold:', threshold) print('find_peaks_spectrum> the first and last', nmed, 'pixels will be ignored') xpeaks = [] if sx_shape[0] < nwinwidth: print('find_peaks_spectrum> sx shape......:', sx_shape) print('find_peaks_spectrum> nwinwidth.....:', nwinwidth) raise ValueError('sx.shape < nwinwidth') i = nmed while i < sx_shape[0] - nmed: if sx[i] > threshold: peak_ok = True j = 0 loop = True while loop: if sx[i - nmed + j] > sx[i - nmed + j + 1]: peak_ok = False j += 1 loop = (j < nmed) and peak_ok if peak_ok: j = nmed + 1 loop = True while loop: if sx[i - nmed + j - 1] < sx[i - nmed + j]: peak_ok = False j += 1 loop = (j < nwinwidth) and peak_ok if peak_ok: xpeaks.append(i) i += nwinwidth - 1 else: i += 1 else: i += 1 ixpeaks = np.array(xpeaks) if debugplot >= 10: print('find_peaks_spectrum> number of peaks found:', len(ixpeaks)) print(ixpeaks) return ixpeaks

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'shortlex'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'excludestart'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '17', '29']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '13']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'excludestart'}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'yield', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'queue'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'collections'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'deque'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'list', 'children': ['26'], 'value': '[(start, other)]'}; {'id': '26', 'type': 'tuple', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'other'}, {'id': '29', 'type': 'while_statement', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '31', 'type': 'block', 'children': ['32', '42']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '37']}; {'id': '34', 'type': 'pattern_list', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'other'}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'queue'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'popleft'}, {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'while_statement', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '44', 'type': 'block', 'children': ['45', '59', '65', '68']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '50']}, {'id': '47', 'type': 'pattern_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'first'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '50', 'type': 'expression_list', 'children': ['51', '54']}, {'id': '51', 'type': 'subscript', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'other'}, {'id': '53', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '54', 'type': 'subscript', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '56', 'type': 'slice', 'children': ['57', '58']}, {'id': '57', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '58', 'type': 'colon', 'children': []}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '62', 'type': 'binary_operator', 'children': ['63', '64'], 'value': '|'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'first'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'yield', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'tuple', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'other'}

def shortlex(start, other, excludestart=False): if not excludestart: yield start queue = collections.deque([(start, other)]) while queue: current, other = queue.popleft() while other: first, other = other[0], other[1:] result = current | first yield result if other: queue.append((result, other))

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'reverse_shortlex'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'excludeend'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '17', '29']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '13']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'excludeend'}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'yield', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'queue'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'collections'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'deque'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'list', 'children': ['26'], 'value': '[(end, other)]'}; {'id': '26', 'type': 'tuple', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'other'}, {'id': '29', 'type': 'while_statement', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '31', 'type': 'block', 'children': ['32', '42']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '37']}; {'id': '34', 'type': 'pattern_list', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'other'}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'queue'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'popleft'}, {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'while_statement', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '44', 'type': 'block', 'children': ['45', '59', '65', '68']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '50']}, {'id': '47', 'type': 'pattern_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'first'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '50', 'type': 'expression_list', 'children': ['51', '54']}, {'id': '51', 'type': 'subscript', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'other'}, {'id': '53', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '54', 'type': 'subscript', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '56', 'type': 'slice', 'children': ['57', '58']}, {'id': '57', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '58', 'type': 'colon', 'children': []}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '62', 'type': 'binary_operator', 'children': ['63', '64'], 'value': '&'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'first'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'yield', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'tuple', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'other'}

def reverse_shortlex(end, other, excludeend=False): if not excludeend: yield end queue = collections.deque([(end, other)]) while queue: current, other = queue.popleft() while other: first, other = other[0], other[1:] result = current & first yield result if other: queue.append((result, other))

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'gnuplot'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'script_name'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'args_dict'}, {'id': '7', 'type': 'dictionary', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '10', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'silent'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '17', '21', '45', '172', '178', '185', '192']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'string', 'children': [], 'value': "'''\n Call a Gnuplot script, passing it arguments and\n datasets.\n Args:\n scipt_name(str): The name of the Gnuplot script.\n args_dict(dict): A dictionary of parameters to pass\n to the script. The `key` is the name of the variable\n that the `item` will be passed to the Gnuplot script\n with.\n data(list): A list of lists containing lists to be plotted.\n The lists can be accessed by plotting the variable\n `data` in the Gnuplot script. The first list in the\n list of lists corresponds to the first column in data,\n and so on.\n silent (bool): `True` if Gnuplot stdout should be silenced,\n `False` if not.\n Returns:\n str: The Gnuplot command used to call the script.\n '''"}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '20', 'type': 'string', 'children': [], 'value': "'gnuplot'"}, {'id': '21', 'type': 'if_statement', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '23', 'type': 'block', 'children': ['24', '29', '37']}; {'id': '24', 'type': 'assert_statement', 'children': ['25', '28']}, {'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'not'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'data'"}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'args_dict'}; {'id': '28', 'type': 'string', 'children': [], 'value': "'Can\\'t use \\'data\\' variable twice.'"}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'data_temp'}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': '_GnuplotDataTemp'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'list_splat', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '42']}, {'id': '39', 'type': 'subscript', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'args_dict'}, {'id': '41', 'type': 'string', 'children': [], 'value': "'data'"}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'data_temp'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '45', 'type': 'if_statement', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'args_dict'}, {'id': '47', 'type': 'block', 'children': ['48', '52', '159', '168']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'augmented_assignment', 'children': ['50', '51'], 'value': '+='}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}, {'id': '51', 'type': 'string', 'children': [], 'value': '\' -e "\''}; {'id': '52', 'type': 'for_statement', 'children': ['53', '54', '59']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'args_dict'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '58', 'type': 'argument_list', 'children': []}, {'id': '59', 'type': 'block', 'children': ['60', '68', '155']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'augmented_assignment', 'children': ['62', '63'], 'value': '+='}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}, {'id': '63', 'type': 'binary_operator', 'children': ['64', '67'], 'value': '+'}; {'id': '64', 'type': 'subscript', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '66', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '67', 'type': 'string', 'children': [], 'value': "'='"}; {'id': '68', 'type': 'if_statement', 'children': ['69', '76', '87', '113', '144']}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '71', 'type': 'argument_list', 'children': ['72', '75']}; {'id': '72', 'type': 'subscript', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '74', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'augmented_assignment', 'children': ['79', '80'], 'value': '+='}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '80', 'type': 'binary_operator', 'children': ['81', '86'], 'value': '+'}, {'id': '81', 'type': 'binary_operator', 'children': ['82', '83'], 'value': '+'}; {'id': '82', 'type': 'string', 'children': [], 'value': "'\\''"}, {'id': '83', 'type': 'subscript', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'arg'}, {'id': '85', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '86', 'type': 'string', 'children': [], 'value': "'\\''"}, {'id': '87', 'type': 'elif_clause', 'children': ['88', '95']}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '94']}, {'id': '91', 'type': 'subscript', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'arg'}, {'id': '93', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'bool'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'if_statement', 'children': ['97', '102', '107']}, {'id': '97', 'type': 'comparison_operator', 'children': ['98', '101'], 'value': 'is'}; {'id': '98', 'type': 'subscript', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '100', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '101', 'type': 'True', 'children': []}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'augmented_assignment', 'children': ['105', '106'], 'value': '+='}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '106', 'type': 'string', 'children': [], 'value': "'1'"}, {'id': '107', 'type': 'else_clause', 'children': ['108']}; {'id': '108', 'type': 'block', 'children': ['109']}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'augmented_assignment', 'children': ['111', '112'], 'value': '+='}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '112', 'type': 'string', 'children': [], 'value': "'0'"}, {'id': '113', 'type': 'elif_clause', 'children': ['114', '121']}; {'id': '114', 'type': 'call', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '116', 'type': 'argument_list', 'children': ['117', '120']}, {'id': '117', 'type': 'subscript', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'arg'}, {'id': '119', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '120', 'type': 'string', 'children': [], 'value': "'__iter__'"}, {'id': '121', 'type': 'block', 'children': ['122']}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'augmented_assignment', 'children': ['124', '125'], 'value': '+='}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}, {'id': '125', 'type': 'binary_operator', 'children': ['126', '143'], 'value': '+'}; {'id': '126', 'type': 'binary_operator', 'children': ['127', '128'], 'value': '+'}, {'id': '127', 'type': 'string', 'children': [], 'value': "'\\''"}; {'id': '128', 'type': 'call', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'string', 'children': [], 'value': "' '"}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'list_comprehension', 'children': ['134', '138']}; {'id': '134', 'type': 'call', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '138', 'type': 'for_in_clause', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '140', 'type': 'subscript', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '142', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '143', 'type': 'string', 'children': [], 'value': "'\\''"}; {'id': '144', 'type': 'else_clause', 'children': ['145']}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'augmented_assignment', 'children': ['148', '149'], 'value': '+='}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}, {'id': '149', 'type': 'call', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'subscript', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '154', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'augmented_assignment', 'children': ['157', '158'], 'value': '+='}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '158', 'type': 'string', 'children': [], 'value': "'; '"}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'assignment', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '162', 'type': 'subscript', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '164', 'type': 'slice', 'children': ['165', '166']}, {'id': '165', 'type': 'colon', 'children': []}; {'id': '166', 'type': 'unary_operator', 'children': ['167'], 'value': '-'}, {'id': '167', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'augmented_assignment', 'children': ['170', '171'], 'value': '+='}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}, {'id': '171', 'type': 'string', 'children': [], 'value': '\'"\''}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'augmented_assignment', 'children': ['174', '175'], 'value': '+='}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}, {'id': '175', 'type': 'binary_operator', 'children': ['176', '177'], 'value': '+'}; {'id': '176', 'type': 'string', 'children': [], 'value': "' '"}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'script_name'}; {'id': '178', 'type': 'if_statement', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'silent'}; {'id': '180', 'type': 'block', 'children': ['181']}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'augmented_assignment', 'children': ['183', '184'], 'value': '+='}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '184', 'type': 'string', 'children': [], 'value': "' > /dev/null 2>&1'"}, {'id': '185', 'type': 'expression_statement', 'children': ['186']}; {'id': '186', 'type': 'call', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'system'}; {'id': '190', 'type': 'argument_list', 'children': ['191']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}; {'id': '192', 'type': 'return_statement', 'children': ['193']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'gnuplot_command'}

def gnuplot(script_name, args_dict={}, data=[], silent=True): ''' Call a Gnuplot script, passing it arguments and datasets. Args: scipt_name(str): The name of the Gnuplot script. args_dict(dict): A dictionary of parameters to pass to the script. The `key` is the name of the variable that the `item` will be passed to the Gnuplot script with. data(list): A list of lists containing lists to be plotted. The lists can be accessed by plotting the variable `data` in the Gnuplot script. The first list in the list of lists corresponds to the first column in data, and so on. silent (bool): `True` if Gnuplot stdout should be silenced, `False` if not. Returns: str: The Gnuplot command used to call the script. ''' gnuplot_command = 'gnuplot' if data: assert 'data' not in args_dict, \ 'Can\'t use \'data\' variable twice.' data_temp = _GnuplotDataTemp(*data) args_dict['data'] = data_temp.name if args_dict: gnuplot_command += ' -e "' for arg in args_dict.items(): gnuplot_command += arg[0] + '=' if isinstance(arg[1], str): gnuplot_command += '\'' + arg[1] + '\'' elif isinstance(arg[1], bool): if arg[1] is True: gnuplot_command += '1' else: gnuplot_command += '0' elif hasattr(arg[1], '__iter__'): gnuplot_command += '\'' + ' '.join([str(v) for v in arg[1]]) + '\'' else: gnuplot_command += str(arg[1]) gnuplot_command += '; ' gnuplot_command = gnuplot_command[:-1] gnuplot_command += '"' gnuplot_command += ' ' + script_name if silent: gnuplot_command += ' > /dev/null 2>&1' os.system(gnuplot_command) return gnuplot_command

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'skip'}, {'id': '7', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'goto_metal'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'goto_reaction'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '36', '56', '65', '74', '83', '87']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '22']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '21'], 'value': '>'}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'skip'}, {'id': '21', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'for_statement', 'children': ['24', '25', '26']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'skip_f'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'skip'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '34']}, {'id': '29', 'type': 'attribute', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'omit_folders'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'skip_f'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '49']}, {'id': '37', 'type': 'call', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'isfile'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '48'], 'value': '+'}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'data_base'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'/publication.txt'"}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'augmented_assignment', 'children': ['52', '55'], 'value': '-='}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'user_base_level'}, {'id': '55', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '63']}; {'id': '58', 'type': 'attribute', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'string', 'children': [], 'value': "'---------------------- \\n'"}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '72']}, {'id': '67', 'type': 'attribute', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'string', 'children': [], 'value': "'Starting folderreader! \\n'"}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '81']}; {'id': '76', 'type': 'attribute', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'string', 'children': [], 'value': "'---------------------- \\n'"}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'found_reaction'}; {'id': '86', 'type': 'False', 'children': []}, {'id': '87', 'type': 'for_statement', 'children': ['88', '92', '100']}; {'id': '88', 'type': 'pattern_list', 'children': ['89', '90', '91']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'dirs'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'walk'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'user_base'}; {'id': '100', 'type': 'block', 'children': ['101', '119', '135', '149', '169', '203', '261', '275', '320']}, {'id': '101', 'type': 'for_statement', 'children': ['102', '103', '106']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'omit_folder'}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'omit_folders'}; {'id': '106', 'type': 'block', 'children': ['107']}, {'id': '107', 'type': 'if_statement', 'children': ['108', '111']}; {'id': '108', 'type': 'comparison_operator', 'children': ['109', '110'], 'value': 'in'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'omit_folder'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'dirs'}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'call', 'children': ['114', '117']}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'dirs'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'remove'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'omit_folder'}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '122', 'type': 'binary_operator', 'children': ['123', '132'], 'value': '-'}, {'id': '123', 'type': 'call', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'call', 'children': ['127', '130']}, {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '130', 'type': 'argument_list', 'children': ['131']}, {'id': '131', 'type': 'string', 'children': [], 'value': '"/"'}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'user_base_level'}, {'id': '135', 'type': 'if_statement', 'children': ['136', '141']}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '138'], 'value': '=='}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'pub_level'}, {'id': '141', 'type': 'block', 'children': ['142']}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'read_pub'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '149', 'type': 'if_statement', 'children': ['150', '155']}; {'id': '150', 'type': 'comparison_operator', 'children': ['151', '152'], 'value': '=='}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'DFT_level'}, {'id': '155', 'type': 'block', 'children': ['156']}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'DFT_code'}, {'id': '161', 'type': 'call', 'children': ['162', '167']}; {'id': '162', 'type': 'attribute', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '167', 'type': 'argument_list', 'children': ['168']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '169', 'type': 'if_statement', 'children': ['170', '175']}; {'id': '170', 'type': 'comparison_operator', 'children': ['171', '172'], 'value': '=='}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'XC_level'}, {'id': '175', 'type': 'block', 'children': ['176', '189', '197']}; {'id': '176', 'type': 'expression_statement', 'children': ['177']}, {'id': '177', 'type': 'assignment', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'DFT_functional'}, {'id': '181', 'type': 'call', 'children': ['182', '187']}; {'id': '182', 'type': 'attribute', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'assignment', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'gas_folder'}; {'id': '194', 'type': 'binary_operator', 'children': ['195', '196'], 'value': '+'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '196', 'type': 'string', 'children': [], 'value': "'/gas/'"}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'read_gas'}; {'id': '202', 'type': 'argument_list', 'children': []}, {'id': '203', 'type': 'if_statement', 'children': ['204', '209']}; {'id': '204', 'type': 'comparison_operator', 'children': ['205', '206'], 'value': '=='}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'reference_level'}, {'id': '209', 'type': 'block', 'children': ['210', '223', '254']}; {'id': '210', 'type': 'if_statement', 'children': ['211', '221']}, {'id': '211', 'type': 'comparison_operator', 'children': ['212', '213'], 'value': 'in'}; {'id': '212', 'type': 'string', 'children': [], 'value': "'gas'"}, {'id': '213', 'type': 'call', 'children': ['214', '219']}; {'id': '214', 'type': 'attribute', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '219', 'type': 'argument_list', 'children': ['220']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '221', 'type': 'block', 'children': ['222']}; {'id': '222', 'type': 'continue_statement', 'children': []}, {'id': '223', 'type': 'if_statement', 'children': ['224', '227']}; {'id': '224', 'type': 'comparison_operator', 'children': ['225', '226'], 'value': 'is'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'goto_metal'}; {'id': '226', 'type': 'None', 'children': []}, {'id': '227', 'type': 'block', 'children': ['228']}; {'id': '228', 'type': 'if_statement', 'children': ['229', '239', '244']}, {'id': '229', 'type': 'comparison_operator', 'children': ['230', '238'], 'value': '=='}; {'id': '230', 'type': 'call', 'children': ['231', '236']}, {'id': '231', 'type': 'attribute', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '236', 'type': 'argument_list', 'children': ['237']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'goto_metal'}, {'id': '239', 'type': 'block', 'children': ['240']}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'assignment', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'goto_metal'}, {'id': '243', 'type': 'None', 'children': []}; {'id': '244', 'type': 'else_clause', 'children': ['245']}, {'id': '245', 'type': 'block', 'children': ['246', '253']}; {'id': '246', 'type': 'expression_statement', 'children': ['247']}, {'id': '247', 'type': 'assignment', 'children': ['248', '252']}; {'id': '248', 'type': 'subscript', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'dirs'}; {'id': '250', 'type': 'slice', 'children': ['251']}, {'id': '251', 'type': 'colon', 'children': []}; {'id': '252', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '253', 'type': 'continue_statement', 'children': []}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'call', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'read_bulk'}, {'id': '259', 'type': 'argument_list', 'children': ['260']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '261', 'type': 'if_statement', 'children': ['262', '267']}; {'id': '262', 'type': 'comparison_operator', 'children': ['263', '264'], 'value': '=='}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '264', 'type': 'attribute', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'slab_level'}, {'id': '267', 'type': 'block', 'children': ['268']}; {'id': '268', 'type': 'expression_statement', 'children': ['269']}, {'id': '269', 'type': 'call', 'children': ['270', '273']}; {'id': '270', 'type': 'attribute', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'read_slab'}, {'id': '273', 'type': 'argument_list', 'children': ['274']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '275', 'type': 'if_statement', 'children': ['276', '281']}; {'id': '276', 'type': 'comparison_operator', 'children': ['277', '278'], 'value': '=='}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '278', 'type': 'attribute', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'reaction_level'}, {'id': '281', 'type': 'block', 'children': ['282', '313']}; {'id': '282', 'type': 'if_statement', 'children': ['283', '286']}, {'id': '283', 'type': 'comparison_operator', 'children': ['284', '285'], 'value': 'is'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'goto_reaction'}, {'id': '285', 'type': 'None', 'children': []}; {'id': '286', 'type': 'block', 'children': ['287']}, {'id': '287', 'type': 'if_statement', 'children': ['288', '298', '303']}; {'id': '288', 'type': 'comparison_operator', 'children': ['289', '297'], 'value': '=='}, {'id': '289', 'type': 'call', 'children': ['290', '295']}; {'id': '290', 'type': 'attribute', 'children': ['291', '294']}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '295', 'type': 'argument_list', 'children': ['296']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'goto_reaction'}; {'id': '298', 'type': 'block', 'children': ['299']}, {'id': '299', 'type': 'expression_statement', 'children': ['300']}; {'id': '300', 'type': 'assignment', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'goto_reaction'}; {'id': '302', 'type': 'None', 'children': []}, {'id': '303', 'type': 'else_clause', 'children': ['304']}; {'id': '304', 'type': 'block', 'children': ['305', '312']}, {'id': '305', 'type': 'expression_statement', 'children': ['306']}; {'id': '306', 'type': 'assignment', 'children': ['307', '311']}, {'id': '307', 'type': 'subscript', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'dirs'}, {'id': '309', 'type': 'slice', 'children': ['310']}; {'id': '310', 'type': 'colon', 'children': []}, {'id': '311', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '312', 'type': 'continue_statement', 'children': []}, {'id': '313', 'type': 'expression_statement', 'children': ['314']}; {'id': '314', 'type': 'call', 'children': ['315', '318']}, {'id': '315', 'type': 'attribute', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'read_reaction'}; {'id': '318', 'type': 'argument_list', 'children': ['319']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '320', 'type': 'if_statement', 'children': ['321', '326']}, {'id': '321', 'type': 'comparison_operator', 'children': ['322', '323'], 'value': '=='}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'level'}, {'id': '323', 'type': 'attribute', 'children': ['324', '325']}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'final_level'}; {'id': '326', 'type': 'block', 'children': ['327', '333', '340']}, {'id': '327', 'type': 'expression_statement', 'children': ['328']}; {'id': '328', 'type': 'assignment', 'children': ['329', '332']}, {'id': '329', 'type': 'attribute', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '333', 'type': 'expression_statement', 'children': ['334']}; {'id': '334', 'type': 'call', 'children': ['335', '338']}, {'id': '335', 'type': 'attribute', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'read_energies'}; {'id': '338', 'type': 'argument_list', 'children': ['339']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'root'}; {'id': '340', 'type': 'if_statement', 'children': ['341', '346']}, {'id': '341', 'type': 'comparison_operator', 'children': ['342', '345'], 'value': 'is'}; {'id': '342', 'type': 'attribute', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'key_value_pairs_reaction'}, {'id': '345', 'type': 'None', 'children': []}; {'id': '346', 'type': 'block', 'children': ['347']}, {'id': '347', 'type': 'expression_statement', 'children': ['348']}; {'id': '348', 'type': 'yield', 'children': ['349']}, {'id': '349', 'type': 'attribute', 'children': ['350', '351']}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'key_value_pairs_reaction'}

def read(self, skip=[], goto_metal=None, goto_reaction=None): if len(skip) > 0: for skip_f in skip: self.omit_folders.append(skip_f) if os.path.isfile(self.data_base + '/publication.txt'): self.user_base_level -= 1 self.stdout.write('---------------------- \n') self.stdout.write('Starting folderreader! \n') self.stdout.write('---------------------- \n') found_reaction = False for root, dirs, files in os.walk(self.user_base): for omit_folder in self.omit_folders: if omit_folder in dirs: dirs.remove(omit_folder) level = len(root.split("/")) - self.user_base_level if level == self.pub_level: self.read_pub(root) if level == self.DFT_level: self.DFT_code = os.path.basename(root) if level == self.XC_level: self.DFT_functional = os.path.basename(root) self.gas_folder = root + '/gas/' self.read_gas() if level == self.reference_level: if 'gas' in os.path.basename(root): continue if goto_metal is not None: if os.path.basename(root) == goto_metal: goto_metal = None else: dirs[:] = [] continue self.read_bulk(root) if level == self.slab_level: self.read_slab(root) if level == self.reaction_level: if goto_reaction is not None: if os.path.basename(root) == goto_reaction: goto_reaction = None else: dirs[:] = [] continue self.read_reaction(root) if level == self.final_level: self.root = root self.read_energies(root) if self.key_value_pairs_reaction is not None: yield self.key_value_pairs_reaction

{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'location'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'wave_field'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'depth'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'block', 'children': ['13', '27', '123']}, {'id': '13', 'type': 'if_statement', 'children': ['14', '20']}; {'id': '14', 'type': 'not_operator', 'children': ['15']}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'wave_field'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'WaveField'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'wave_field'}; {'id': '24', 'type': 'subscript', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'WaveField'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'wave_field'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '35', '91', '119']}; {'id': '28', 'type': 'boolean_operator', 'children': ['29', '32'], 'value': 'and'}, {'id': '29', 'type': 'comparison_operator', 'children': ['30', '31'], 'value': 'is'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '31', 'type': 'None', 'children': []}; {'id': '32', 'type': 'comparison_operator', 'children': ['33', '34'], 'value': 'is'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'depth'}; {'id': '34', 'type': 'None', 'children': []}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'for_statement', 'children': ['37', '40', '49', '69']}, {'id': '37', 'type': 'pattern_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'layer'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'subscript', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '45', 'type': 'slice', 'children': ['46', '47']}; {'id': '46', 'type': 'colon', 'children': []}, {'id': '47', 'type': 'unary_operator', 'children': ['48'], 'value': '-'}; {'id': '48', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'if_statement', 'children': ['51', '59']}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '55', '56'], 'value': '<='}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'layer'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'depth'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'depth'}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'layer'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'depth_base'}, {'id': '59', 'type': 'block', 'children': ['60', '68']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'depth_within'}, {'id': '63', 'type': 'binary_operator', 'children': ['64', '65'], 'value': '-'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'depth'}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'layer'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'depth'}; {'id': '68', 'type': 'break_statement', 'children': []}, {'id': '69', 'type': 'else_clause', 'children': ['70']}; {'id': '70', 'type': 'block', 'children': ['71', '80', '87']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '74', 'type': 'binary_operator', 'children': ['75', '79'], 'value': '-'}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'layer'}, {'id': '83', 'type': 'subscript', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '85', 'type': 'unary_operator', 'children': ['86'], 'value': '-'}; {'id': '86', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'depth_within'}; {'id': '90', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '91', 'type': 'elif_clause', 'children': ['92', '99']}; {'id': '92', 'type': 'boolean_operator', 'children': ['93', '96'], 'value': 'and'}, {'id': '93', 'type': 'comparison_operator', 'children': ['94', '95'], 'value': 'is'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '95', 'type': 'None', 'children': []}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '98'], 'value': 'is'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'depth'}; {'id': '98', 'type': 'None', 'children': []}, {'id': '99', 'type': 'block', 'children': ['100', '106', '115']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'layer'}, {'id': '103', 'type': 'subscript', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'layer'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'depth_within'}; {'id': '118', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '119', 'type': 'else_clause', 'children': ['120']}; {'id': '120', 'type': 'block', 'children': ['121']}, {'id': '121', 'type': 'raise_statement', 'children': ['122']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'NotImplementedError'}, {'id': '123', 'type': 'return_statement', 'children': ['124']}; {'id': '124', 'type': 'call', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'Location'}; {'id': '126', 'type': 'argument_list', 'children': ['127', '128', '129', '130']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'layer'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'wave_field'}

def location(self, wave_field, depth=None, index=None): if not isinstance(wave_field, WaveField): wave_field = WaveField[wave_field] if index is None and depth is not None: for i, layer in enumerate(self[:-1]): if layer.depth <= depth < layer.depth_base: depth_within = depth - layer.depth break else: i = len(self) - 1 layer = self[-1] depth_within = 0 elif index is not None and depth is None: layer = self[index] i = self.index(layer) depth_within = 0 else: raise NotImplementedError return Location(i, layer, wave_field, depth_within)