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README.md
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size_categories:
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- n<1K
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pretty_name: 'SPIDER: Spine MRI Segmentation'
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---
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# Spine Segmentation: Discs, Vertebrae and Spinal Canal (SPIDER)
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- van der Graaf, J.W., van Hooff, M.L., Buckens, C.F.M. et al. *Lumbar spine segmentation in MR images: a dataset and a public benchmark.*
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Sci Data 11, 264 (2024). https://doi.org/10.1038/s41597-024-03090-w
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Original data are available on [Zenodo](https://zenodo.org/records/
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<figure>
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<img src="docs/ex1.png" alt="Example MRI Image" style="height:300px;">
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### Disclaimer
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I am not affiliated in any way with the aforementioned paper, researchers, or organizations. Please validate any findings using this curated dataset
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against the original data provided by the researchers on [Zenodo](https://zenodo.org/records/
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### Known Issues/Bugs
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1. Serializing data into Apache Arrow format is required to make the dataset available via HuggingFace's `datasets` library. However, it introduces some segmentation
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mask integer values that do not map exactly to a defined [anatomical feature category](https://grand-challenge.org/algorithms/spider-baseline-iis/).
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See the data loading [tutorial](tutorials/load_data.ipynb) for more information and temporary work-arounds.
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size_categories:
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- n<1K
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pretty_name: 'SPIDER: Spine MRI Segmentation'
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task_categories:
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- image-segmentation
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---
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# Spine Segmentation: Discs, Vertebrae and Spinal Canal (SPIDER)
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- van der Graaf, J.W., van Hooff, M.L., Buckens, C.F.M. et al. *Lumbar spine segmentation in MR images: a dataset and a public benchmark.*
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Sci Data 11, 264 (2024). https://doi.org/10.1038/s41597-024-03090-w
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Original data are available on [Zenodo](https://zenodo.org/records/10159290). More information can be found at [SPIDER Grand Challenge](https://spider.grand-challenge.org/).
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<figure>
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<img src="docs/ex1.png" alt="Example MRI Image" style="height:300px;">
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### Disclaimer
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I am not affiliated in any way with the aforementioned paper, researchers, or organizations. Please validate any findings using this curated dataset
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against the original data provided by the researchers on [Zenodo](https://zenodo.org/records/10159290).
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### Known Issues/Bugs
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1. Serializing data into Apache Arrow format is required to make the dataset available via HuggingFace's `datasets` library. However, it introduces some segmentation
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mask integer values that do not map exactly to a defined [anatomical feature category](https://grand-challenge.org/algorithms/spider-baseline-iis/).
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See the data loading [tutorial](tutorials/load_data.ipynb) for more information and temporary work-arounds.
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