Chris Oswald
commited on
Commit
·
7458736
1
Parent(s):
067a44d
debugging
Browse files
SPIDER.py
CHANGED
@@ -75,11 +75,8 @@ def standardize_3D_image(
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image = np.transpose(image, axes=[1, 2, 0])
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# Resize image
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image = skimage.transform.resize(image, resize_shape)
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-
# Rescale to UInt8 type (required for PyArrow and PIL)
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image = skimage.img_as_ubyte(image)
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return image
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-
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# Define constants
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MIN_IVD = 0
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MAX_IVD = 9
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@@ -495,6 +492,9 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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resize_shape,
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)
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# Load .mha mask file
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mask_path = os.path.join(paths_dict['masks'], 'masks', example)
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mask = sitk.ReadImage(mask_path)
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image = np.transpose(image, axes=[1, 2, 0])
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# Resize image
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image = skimage.transform.resize(image, resize_shape)
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return image
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# Define constants
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MIN_IVD = 0
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MAX_IVD = 9
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resize_shape,
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)
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+
# Rescale image to UInt8 type (required for PyArrow and PIL)
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+
image_array_standardized = skimage.img_as_ubyte(image_array_standardized)
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+
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# Load .mha mask file
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mask_path = os.path.join(paths_dict['masks'], 'masks', example)
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mask = sitk.ReadImage(mask_path)
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