Chris Oswald commited on
Commit
7458736
·
1 Parent(s): 067a44d
Files changed (1) hide show
  1. SPIDER.py +3 -3
SPIDER.py CHANGED
@@ -75,11 +75,8 @@ def standardize_3D_image(
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  image = np.transpose(image, axes=[1, 2, 0])
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  # Resize image
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  image = skimage.transform.resize(image, resize_shape)
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- # Rescale to UInt8 type (required for PyArrow and PIL)
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- image = skimage.img_as_ubyte(image)
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  return image
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-
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  # Define constants
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  MIN_IVD = 0
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  MAX_IVD = 9
@@ -495,6 +492,9 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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  resize_shape,
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  )
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  # Load .mha mask file
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  mask_path = os.path.join(paths_dict['masks'], 'masks', example)
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  mask = sitk.ReadImage(mask_path)
 
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  image = np.transpose(image, axes=[1, 2, 0])
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  # Resize image
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  image = skimage.transform.resize(image, resize_shape)
 
 
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  return image
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  # Define constants
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  MIN_IVD = 0
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  MAX_IVD = 9
 
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  resize_shape,
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  )
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+ # Rescale image to UInt8 type (required for PyArrow and PIL)
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+ image_array_standardized = skimage.img_as_ubyte(image_array_standardized)
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+
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  # Load .mha mask file
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  mask_path = os.path.join(paths_dict['masks'], 'masks', example)
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  mask = sitk.ReadImage(mask_path)