Datasets:

donnyb
/

DS569k

@@ -7,7 +7,6 @@ tags:
 size_categories:
 - 100K<n<1M
 ---
-# 569k
 Want to analyze some proteins, but lack embeddings? Want to perform vector similarity search? Want a context of known proteins embeddings? Look no further!
@@ -22,9 +21,9 @@ See the data viewer for all information. Most of the metadata on each protein an
 - `accession`: the Uniprot Accession Number that identifies each protein uniquely
 - `embedding`: 128 dimensional vectors computed from the [ProteinCLIP](https://github.com/wukevin/proteinclip) models (first from ESM 6 layer model last layer).
-## View 2D projection of `proteinclip_embed_esm2_6` embeddings w/ topic modeling
-Projection of `embedding` into 2D for exploration: https://atlas.nomic.ai/data/donnybertucci/lackadaisical-goodfellow/map
 <video controls autoplay src="https://cdn-uploads.huggingface.co/production/uploads/6260e4e99c4c9dc0ed60e8ca/xyugJj612OtpsixQy2oio.qt"></video>
 ## Credit

 size_categories:
 - 100K<n<1M
 ---
 Want to analyze some proteins, but lack embeddings? Want to perform vector similarity search? Want a context of known proteins embeddings? Look no further!
 - `accession`: the Uniprot Accession Number that identifies each protein uniquely
 - `embedding`: 128 dimensional vectors computed from the [ProteinCLIP](https://github.com/wukevin/proteinclip) models (first from ESM 6 layer model last layer).
+## Example Usecase
+Upload all the embeddings to Nomic Atlas to create https://atlas.nomic.ai/data/donnybertucci/lackadaisical-goodfellow/map
 <video controls autoplay src="https://cdn-uploads.huggingface.co/production/uploads/6260e4e99c4c9dc0ed60e8ca/xyugJj612OtpsixQy2oio.qt"></video>
 ## Credit