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Update README.md
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README.md
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**Important columns**
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- `accession`: the Uniprot Accession Number that identifies each protein uniquely
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- `
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- `embed_esm2_6`: 320 dimensional vectors computed from the 6th layer of ESM2 esm2_t6_8M_UR50D model from [fair-esm](https://github.com/facebookresearch/esm).
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- `proteinclip_embed_esm2_6`: 128 dimensional vectors computed from the [ProteinCLIP](https://github.com/wukevin/proteinclip) models.
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## View 2D projection of `proteinclip_embed_esm2_6` embeddings w/ topic modeling
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<video controls autoplay src="https://cdn-uploads.huggingface.co/production/uploads/6260e4e99c4c9dc0ed60e8ca/xyugJj612OtpsixQy2oio.qt"></video>
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**Important columns**
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- `accession`: the Uniprot Accession Number that identifies each protein uniquely
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- `embedding`: 128 dimensional vectors computed from the [ProteinCLIP](https://github.com/wukevin/proteinclip) models (first from ESM 6 layer model last layer).
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## View 2D projection of `proteinclip_embed_esm2_6` embeddings w/ topic modeling
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Projection of `embedding` into 2D for exploration: https://atlas.nomic.ai/data/donnybertucci/lackadaisical-goodfellow/map
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<video controls autoplay src="https://cdn-uploads.huggingface.co/production/uploads/6260e4e99c4c9dc0ed60e8ca/xyugJj612OtpsixQy2oio.qt"></video>
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