Mimic4Dataset / cohort.py
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import ipywidgets as widgets
import sys
from pathlib import Path
import os
import importlib
import shutil
import time
import yaml
sys.path.append('/preprocessing/day_intervals_preproc')
sys.path.append('/utils')
sys.path.append('/preprocessing/hosp_module_preproc')
sys.path.append('/model')
import day_intervals_cohort_v2
import day_intervals_cohort
import feature_selection_icu
import data_generation_icu_modify
def task_cohort(task,mimic_path,path_benchmark, config):
root_dir = path_benchmark
with open(config) as f:
config = yaml.safe_load(f)
version_path = mimic_path
version = version_path.split('/')[-1][0]
print(version)