thbndi commited on
Commit
0daf764
·
1 Parent(s): 74ecaad

Update Mimic4Dataset.py

Browse files
Files changed (1) hide show
  1. Mimic4Dataset.py +3 -1
Mimic4Dataset.py CHANGED
@@ -5,6 +5,7 @@ import pandas as pd
5
  import datasets
6
  import pickle
7
  #import cohort
 
8
  from .test import print_test
9
 
10
  _DESCRIPTION = """\
@@ -133,7 +134,8 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
133
  #mimic=self.mimic_path
134
  data_dir = self.config.data_dir + "/dataDic"
135
  path_git = dl_manager.download_and_extract(_URL)
136
- path_bench = path_git + "/MIMIC-IV-Data-Pipeline-main"
 
137
  return [
138
  datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir, "benchmark": path_bench}),
139
  ]
 
5
  import datasets
6
  import pickle
7
  #import cohort
8
+ from datasets.utils import DownloadManager, extract_path_from_uri
9
  from .test import print_test
10
 
11
  _DESCRIPTION = """\
 
134
  #mimic=self.mimic_path
135
  data_dir = self.config.data_dir + "/dataDic"
136
  path_git = dl_manager.download_and_extract(_URL)
137
+ local_path_git = extract_path_from_uri(path_git)
138
+ path_bench = local_path_git + "/MIMIC-IV-Data-Pipeline-main"
139
  return [
140
  datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir, "benchmark": path_bench}),
141
  ]