thbndi commited on
Commit
1142e29
·
1 Parent(s): b021593

Update Mimic4Dataset.py

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Files changed (1) hide show
  1. Mimic4Dataset.py +7 -4
Mimic4Dataset.py CHANGED
@@ -45,7 +45,10 @@ def check_config(task,config_file):
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  with open(config_file) as f:
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  config = yaml.safe_load(f)
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- disease_label = config['disease_label']
 
 
 
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  time = config['timePrediction']
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  label = task
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  timeW = config['timeWindow']
@@ -99,18 +102,18 @@ def check_config(task,config_file):
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  elif task=='Mortality':
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  time=0
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- disease_label=""
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  assert (predW<=8 and predW>=2, "Prediction window should be between 2 and 8")
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  assert (timeW[0]=='Fisrt' and include<=72 and include>=24, "Time window should be between First 24 and First 72")
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  elif task=='Length of Stay':
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- disease_label=""
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  assert (timeW[0]=='Fisrt' and include<=72 and include>=24, "Time window should be between Fisrt 24 and Fisrt 72")
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  assert (time<=10 and time>=1, "Length of stay should be between 1 and 10")
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  predW=0
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  elif task=='Readmission':
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- disease_label=""
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  assert (timeW[0]=='Last' and include<=72 and include>=24, "Time window should be between Last 24 and Last 72")
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  assert (time<=150 and time>=10 and time%10==0, "Readmission window should be between 10 and 150 with a step of 10")
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  predW=0
 
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  with open(config_file) as f:
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  config = yaml.safe_load(f)
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+ if task=='Phenotype':
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+ disease_label = config['disease_label']
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+ else :
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+ disease_label = ""
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  time = config['timePrediction']
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  label = task
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  timeW = config['timeWindow']
 
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  elif task=='Mortality':
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  time=0
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+ label= 'Mortality'
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  assert (predW<=8 and predW>=2, "Prediction window should be between 2 and 8")
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  assert (timeW[0]=='Fisrt' and include<=72 and include>=24, "Time window should be between First 24 and First 72")
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  elif task=='Length of Stay':
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+ label= 'Length of Stay'
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  assert (timeW[0]=='Fisrt' and include<=72 and include>=24, "Time window should be between Fisrt 24 and Fisrt 72")
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  assert (time<=10 and time>=1, "Length of stay should be between 1 and 10")
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  predW=0
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  elif task=='Readmission':
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+ label= 'Readmission'
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  assert (timeW[0]=='Last' and include<=72 and include>=24, "Time window should be between Last 24 and Last 72")
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  assert (time<=150 and time>=10 and time%10==0, "Readmission window should be between 10 and 150 with a step of 10")
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  predW=0