Update cohort.py

cohort.py

@@ -13,7 +13,7 @@ def task_cohort(task,mimic_path,path_benchmark, config_path):
     config_path='./config/'+config_path
     with open(config_path) as f:
         config = yaml.safe_load(f)
-    version_path = mimic_path
+    version_path = './'+mimic_path
     version = version_path.split('/')[-1][0]
     start = time.time()
     #----------------------------------------------config----------------------------------------------------
@@ -53,9 +53,9 @@ def task_cohort(task,mimic_path,path_benchmark, config_path):
 
     #-----------------------------------------------EXTRACT MIMIC-----------------------------------------------------
     if version == '2':
-        cohort_output = day_intervals_cohort_v22.extract_data(icu_no_icu,label,tim,icd_code, root_dir,disease_label)
+        cohort_output = day_intervals_cohort_v22.extract_data(icu_no_icu,label,tim,icd_code, root_dir,version_path,disease_label)
     elif version == '1':
-        cohort_output = day_intervals_cohort.extract_data(icu_no_icu,label,tim,icd_code, root_dir,disease_label)
+        cohort_output = day_intervals_cohort.extract_data(icu_no_icu,label,tim,icd_code, root_dir,version_path,disease_label)
     end = time.time()
     print("Time elapsed : ", round((end - start)/60,2),"mins")
     #----------------------------------------------FEATURES-------------------------------------------------------