thbndi commited on
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36c652a
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1 Parent(s): 8dc0ce1

Update Mimic4Dataset.py

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  1. Mimic4Dataset.py +4 -4
Mimic4Dataset.py CHANGED
@@ -32,7 +32,7 @@ _CITATION = "https://proceedings.mlr.press/v193/gupta22a.html"
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  _URL = "https://github.com/healthylaife/MIMIC-IV-Data-Pipeline"
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  _DATA_GEN = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/data_generation_icu_modify.py'
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  _DAY_INT= 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/day_intervals_cohort_v22.py'
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- _COHORT = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/cohort.py'
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  _CONFIG_URLS = {'los' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/los.config',
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  'mortality' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/mortality.config',
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  'phenotype' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/phenotype.config',
@@ -624,9 +624,9 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  file_path, head = urlretrieve(_DAY_INT, "day_intervals_cohort_v22.py")
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  shutil.move(file_path, './preprocessing/day_intervals_preproc')
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- file_path, head = urlretrieve(_COHORT, "cohort.py")
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- if not os.path.exists('cohort.py'):
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- shutil.move(file_path, './')
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  data_dir = "./data/dict/"+self.config.name.replace(" ","_")+"/dataDic"
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  sys.path.append(path_bench)
 
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  _URL = "https://github.com/healthylaife/MIMIC-IV-Data-Pipeline"
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  _DATA_GEN = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/data_generation_icu_modify.py'
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  _DAY_INT= 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/day_intervals_cohort_v22.py'
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+ #_COHORT = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/cohort.py'
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  _CONFIG_URLS = {'los' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/los.config',
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  'mortality' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/mortality.config',
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  'phenotype' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/phenotype.config',
 
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  file_path, head = urlretrieve(_DAY_INT, "day_intervals_cohort_v22.py")
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  shutil.move(file_path, './preprocessing/day_intervals_preproc')
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+ #file_path, head = urlretrieve(_COHORT, "cohort.py")
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+ #if not os.path.exists('cohort.py'):
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+ # shutil.move(file_path, './')
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  data_dir = "./data/dict/"+self.config.name.replace(" ","_")+"/dataDic"
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  sys.path.append(path_bench)