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config/readme.md
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@@ -31,33 +31,6 @@ outlier: <outlier>
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left_outlier: <left_outlier>
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```
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The configuration file should be in YAML format (.config file) and follow the structure outlined below for **Non-ICU Data**:
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```yaml
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disease_label: <disease_label> mandatory only if the prediction task is Phenotype
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timePrediction: <timePrediction>
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timeWindow: <timeWindow>
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timebucket: <timebucket>
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radimp: <radimp>
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predW: <predW>
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diagnosis: <diagnosis>
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lab: <lab>
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proc: <proc>
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meds: <meds>
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disease_filter: <disease_filter>
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icu_no_icu: <icu_no_icu>
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groupingDiag: <groupingDiag>
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groupingProc: <groupingProc>
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groupingMed: <groupingMed>
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select_diag: <select_diag>
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select_med: <select_med>
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select_proc: <select_proc>
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select_lab: <select_lab>
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outlier_removal: <outlier_removal>
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outlier: <outlier>
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left_outlier: <left_outlier>
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```
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Replace the `<variable>` placeholders with the corresponding values specific to your use case. Detailed explanations of each variable and their valid values are provided in the next section.
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## Variable Definitions and Valid Values
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outlier: 98
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left_outlier: 0
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```
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Here's an example of a valid configuration file for **Non-ICU Data**:
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```yaml
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timePrediction: 0
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timeWindow: First 48 hours
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timebucket: 2
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radimp: forward fill and mean
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predW: 2
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diagnosis: True
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lab: True
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proc: False
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meds: False
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disease_filter: CKD
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icu_no_icu: ICU
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groupingDiag: Convert ICD-9 to ICD-10 and group ICD-10 codes
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select_diag: False
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select_med: False
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select_proc: False
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select_lab: False
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outlier_removal: Impute Outlier (default:98)
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outlier: 98
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left_outlier: 0
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groupingMed: Yes
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groupingProc: ICD-10
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```
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Feel free to modify the values to fit your specific requirements.
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left_outlier: <left_outlier>
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```
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Replace the `<variable>` placeholders with the corresponding values specific to your use case. Detailed explanations of each variable and their valid values are provided in the next section.
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## Variable Definitions and Valid Values
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outlier: 98
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left_outlier: 0
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```
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Feel free to modify the values to fit your specific requirements.
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