thbndi commited on
Commit
417795a
·
1 Parent(s): 43f4fc7

Update Mimic4Dataset.py

Browse files
Files changed (1) hide show
  1. Mimic4Dataset.py +1 -5
Mimic4Dataset.py CHANGED
@@ -41,28 +41,24 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
41
  Mimic4DatasetConfig(
42
  name="Phenotype",
43
  version=VERSION,
44
- data_dir=os.path.abspath("./data/dict/cohort_icu_readmission_30_I50"),
45
  description="Dataset for mimic4 Phenotype task",
46
  mimic_path = None
47
  ),
48
  Mimic4DatasetConfig(
49
  name="Readmission",
50
  version=VERSION,
51
- data_dir=os.path.abspath("./data/dict"),
52
  description="Dataset for mimic4 Readmission task",
53
  mimic_path = None
54
  ),
55
  Mimic4DatasetConfig(
56
  name="Length of Stay",
57
  version=VERSION,
58
- data_dir=os.path.abspath("./data/dict"),
59
  description="Dataset for mimic4 Length of Stay task",
60
  mimic_path = None
61
  ),
62
  Mimic4DatasetConfig(
63
  name="Mortality",
64
  version=VERSION,
65
- data_dir=os.path.abspath("./data/dict"),
66
  description="Dataset for mimic4 Mortality task",
67
  mimic_path = None
68
  ),
@@ -133,7 +129,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
133
  repodir = os.getcwd()
134
  path_bench = repodir+'/MIMIC-IV-Data-Pipeline-main'
135
  repo_url='https://github.com/healthylaife/MIMIC-IV-Data-Pipeline'
136
- data_dir = path_bench + "/dataDic"
137
  if not os.path.exists(path_bench):
138
  #subprocess.run(["git", "clone", repo_url, path_bench])
139
  print('ok')
 
41
  Mimic4DatasetConfig(
42
  name="Phenotype",
43
  version=VERSION,
 
44
  description="Dataset for mimic4 Phenotype task",
45
  mimic_path = None
46
  ),
47
  Mimic4DatasetConfig(
48
  name="Readmission",
49
  version=VERSION,
 
50
  description="Dataset for mimic4 Readmission task",
51
  mimic_path = None
52
  ),
53
  Mimic4DatasetConfig(
54
  name="Length of Stay",
55
  version=VERSION,
 
56
  description="Dataset for mimic4 Length of Stay task",
57
  mimic_path = None
58
  ),
59
  Mimic4DatasetConfig(
60
  name="Mortality",
61
  version=VERSION,
 
62
  description="Dataset for mimic4 Mortality task",
63
  mimic_path = None
64
  ),
 
129
  repodir = os.getcwd()
130
  path_bench = repodir+'/MIMIC-IV-Data-Pipeline-main'
131
  repo_url='https://github.com/healthylaife/MIMIC-IV-Data-Pipeline'
132
+ data_dir = path_bench + "/data/dataDic"
133
  if not os.path.exists(path_bench):
134
  #subprocess.run(["git", "clone", repo_url, path_bench])
135
  print('ok')