Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -201,7 +201,6 @@ def vocab(task,diag_flag,proc_flag,out_flag,chart_flag,med_flag,lab_flag):
         return ethVocabDict,genderVocabDict,ageVocabDict,insVocabDict 
 
 def concat_data(data,task,feat_cond,feat_proc,feat_out,feat_chart,feat_meds):
-    print(feat_proc)
     meds=data['Med']
     proc = data['Proc']
     out = data['Out']
@@ -430,7 +429,7 @@ def generate_split(path,task,concat,feat_cond,feat_chart,feat_proc, feat_meds, f
     for _, data in tqdm(df.iterrows(),desc='Encoding Splits Data for '+task+' task'):
         concat_cols=[]
         sample=data
-        dyn_df,cond_df,demo=concat_data(sample,taskf,feat_cond,feat_chart,feat_proc, feat_meds, feat_out)
+        dyn_df,cond_df,demo=concat_data(sample,taskf,feat_cond,feat_proc,feat_out,feat_chart,feat_meds)
         dyn=dyn_df.copy()
         dyn.columns=dyn.columns.droplevel(0)
         cols=dyn.columns
@@ -687,7 +686,10 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         self.conf='./config/'+file_path.split('/')[-1]
         if not os.path.exists(self.conf):
             shutil.move(file_path,'./config')
-        
+        with open(self.conf) as f:
+            config = yaml.safe_load(f)
+        self.feat_cond, self.feat_chart, self.feat_proc, self.feat_meds, self.feat_out = config['diagnosis'], config['chart'], config['proc'],  config['meds'], config['output']
+
         #####################downloads modules from hub
         if not os.path.exists('./model/data_generation_icu_modify.py'):
             file_path, head = urlretrieve(_DATA_GEN, "data_generation_icu_modify.py")
@@ -979,13 +981,8 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
     
 #############################################################################################################################
     def _info(self):
-
         self.path = self.create_cohort()
-
-        with open(self.conf) as f:
-            config = yaml.safe_load(f)
-        self.feat_cond, self.feat_chart, self.feat_proc, self.feat_meds, self.feat_out = config['diagnosis'], config['chart'], config['proc'],  config['meds'], config['output']
-
+        
         if self.encoding == 'onehot' :
             return self._info_encoded()