Update Mimic4Dataset.py
Browse files- Mimic4Dataset.py +8 -4
Mimic4Dataset.py
CHANGED
@@ -140,13 +140,15 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
|
|
140 |
version = self.mimic_path.split('/')[-1]
|
141 |
m = self.mimic_path.split('/')[-2]
|
142 |
s='/'+m+'/'+version
|
|
|
143 |
dir = self.mimic_path.replace(s,'')
|
144 |
print(dir)
|
145 |
if dir[-1]!='/':
|
146 |
dir=dir+'/'
|
147 |
elif dir=='':
|
148 |
dir="./"
|
149 |
-
|
|
|
150 |
os.chdir(parent_dir)
|
151 |
print('0 : '+os.getcwd())
|
152 |
|
@@ -163,10 +165,12 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
|
|
163 |
print('1 bis : '+os.getcwd())
|
164 |
subprocess.run(["git", "clone", repo_url, path_bench])
|
165 |
os.chdir(path_bench)
|
166 |
-
|
167 |
-
|
168 |
-
|
|
|
169 |
print('0 : '+os.getcwd())
|
|
|
170 |
|
171 |
#download config file if not custom
|
172 |
if self.config_path[0:4] == 'http':
|
|
|
140 |
version = self.mimic_path.split('/')[-1]
|
141 |
m = self.mimic_path.split('/')[-2]
|
142 |
s='/'+m+'/'+version
|
143 |
+
|
144 |
dir = self.mimic_path.replace(s,'')
|
145 |
print(dir)
|
146 |
if dir[-1]!='/':
|
147 |
dir=dir+'/'
|
148 |
elif dir=='':
|
149 |
dir="./"
|
150 |
+
|
151 |
+
parent_dir = os.path.dirname(self.mimic_path)
|
152 |
os.chdir(parent_dir)
|
153 |
print('0 : '+os.getcwd())
|
154 |
|
|
|
165 |
print('1 bis : '+os.getcwd())
|
166 |
subprocess.run(["git", "clone", repo_url, path_bench])
|
167 |
os.chdir(path_bench)
|
168 |
+
os.makedirs('mimic-iv')
|
169 |
+
shutil.move(self.mimic_path,path_bench+'/mimic-iv')
|
170 |
+
|
171 |
+
#print('2 : '+os.getcwd())
|
172 |
print('0 : '+os.getcwd())
|
173 |
+
self.mimic_path = './mimic-iv/'+version
|
174 |
|
175 |
#download config file if not custom
|
176 |
if self.config_path[0:4] == 'http':
|