Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -358,6 +358,8 @@ def getXY_deep(data,task,feat_cond,feat_proc,feat_out,feat_chart,feat_meds):
         charts = charts.unsqueeze(0)
         charts = torch.tensor(charts)
         charts = charts.type(torch.LongTensor)
+        chart=chart.view(chart.shape[1],chart.shape[2])
+        
     if feat_meds:
         meds = dyn['MEDS']
         meds=meds.to_numpy()
@@ -365,6 +367,7 @@ def getXY_deep(data,task,feat_cond,feat_proc,feat_out,feat_chart,feat_meds):
         meds = meds.unsqueeze(0)
         meds = torch.tensor(meds)
         meds = meds.type(torch.LongTensor)
+        meds=meds.view(meds.shape[1],meds.shape[2])
 
     if feat_proc:
         proc = dyn['PROC']
@@ -373,6 +376,7 @@ def getXY_deep(data,task,feat_cond,feat_proc,feat_out,feat_chart,feat_meds):
         proc = proc.unsqueeze(0)
         proc = torch.tensor(proc)
         proc = proc.type(torch.LongTensor)
+        proc=proc.view(proc.shape[1],proc.shape[2])
 
     if feat_out:
         out = dyn['OUT']
@@ -381,6 +385,7 @@ def getXY_deep(data,task,feat_cond,feat_proc,feat_out,feat_chart,feat_meds):
         out = out.unsqueeze(0)
         out = torch.tensor(out)
         out = out.type(torch.LongTensor)
+        out=out.view(out.shape[1],out.shape[2])
 
     if feat_lab:
         lab = dyn['LAB']
@@ -389,6 +394,7 @@ def getXY_deep(data,task,feat_cond,feat_proc,feat_out,feat_chart,feat_meds):
         lab = lab.unsqueeze(0)
         lab = torch.tensor(lab)
         lab = lab.type(torch.LongTensor)
+        lab=lab.view(lab.shape[1],lab.shape[2])
 
 ####################""
     
@@ -954,15 +960,9 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         with open(filepath, 'rb') as fp:
             dico = pickle.load(fp)
         task=self.config.name.replace(" ","_")
-        i=0
-        for key, data in dico.items():
-            
+        for key, data in dico.items():   
             stat, demo, meds, chart, out, proc, lab, y = getXY_deep(data, task, self.feat_cond,  self.feat_proc,  self.feat_out,  self.feat_chart, self.feat_meds)
-            if i==998:
-                print('998 : \n', stat.shape, demo.shape, meds.shape, chart.shape, out.shape, proc.shape, lab.shape, y.shape)
-            if i==999:
-                print('\n 999 : \n', stat.shape, demo.shape, meds.shape, chart.shape, out.shape, proc.shape, lab.shape, y.shape)
-            i+=1
+
             yield int(key), {
                 'label': y,
                 'DEMO': demo,