thbndi commited on
Commit
9ce76f5
·
1 Parent(s): 2ca2207

Update Mimic4Dataset.py

Browse files
Files changed (1) hide show
  1. Mimic4Dataset.py +8 -4
Mimic4Dataset.py CHANGED
@@ -29,7 +29,7 @@ class Mimic4DatasetConfig(datasets.BuilderConfig):
29
  ):
30
  super().__init__(**kwargs)
31
  self.mimic_path =mimic_path
32
- print_test('hello')
33
  #self.config = config
34
  #cohort.task_cohort(self.task,self.mimic_path)
35
 
@@ -128,15 +128,19 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
128
  citation=_CITATION,
129
  )
130
 
131
- def _split_generators(self, dl_manager):
132
  data_dir = self.config.data_dir + "/dataDic"
133
  #mimic=self.mimic_path
 
 
 
134
  return [
135
- datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
136
  ]
137
 
138
 
139
- def _generate_examples(self, filepath):
 
140
  with open(filepath, 'rb') as fp:
141
  dataDic = pickle.load(fp)
142
  for hid, data in dataDic.items():
 
29
  ):
30
  super().__init__(**kwargs)
31
  self.mimic_path =mimic_path
32
+
33
  #self.config = config
34
  #cohort.task_cohort(self.task,self.mimic_path)
35
 
 
128
  citation=_CITATION,
129
  )
130
 
131
+ def _split_generators(self, dl_manager: datasets.DownloadManager()):
132
  data_dir = self.config.data_dir + "/dataDic"
133
  #mimic=self.mimic_path
134
+ data_dir = self.config.data_dir + "/dataDic"
135
+ path_git = dl_manager.download_and_extract(_URL)
136
+ path_bench = path_git + "/MIMIC-IV-Data-Pipeline-main"
137
  return [
138
+ datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir, "benchmark": path_bench}),
139
  ]
140
 
141
 
142
+ def _generate_examples(self, filepath,benchmark):
143
+ print_test('hello',benchmark)
144
  with open(filepath, 'rb') as fp:
145
  dataDic = pickle.load(fp)
146
  for hid, data in dataDic.items():