Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -13,7 +13,7 @@ _DESCRIPTION = """\
 Dataset for mimic4 data, by default for the Mortality task.
 Available tasks are: Mortality, Length of Stay, Readmission, Phenotype.
 The data is extracted from the mimic4 database using this pipeline: 'https://github.com/healthylaife/MIMIC-IV-Data-Pipeline/tree/main'
-mimic path should have this form : "absolute/path/to/mimic4data/mimiciv/2.2"
+mimic path should have this form : "path/to/mimic4data/from/username/mimiciv/2.2"
 """
 
 _HOMEPAGE = "https://huggingface.co/datasets/thbndi/Mimic4Dataset"
@@ -140,22 +140,27 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         version = self.mimic_path.split('/')[-1]
         m = self.mimic_path.split('/')[-2]
         s='/'+m+'/'+version
-        dir = self.mimic_path.replace(s,'')
-        os.chdir(dir)
+        root = self.mimic_path.replace(s,'')
+        if dir[-1]!='/':
+            dir=dir+'/'
+        elif dir=='':
+            dir="./"
+        os.chdir(root)
+
 
 
         #clone git repo if doesnt exists
         repo_url='https://github.com/healthylaife/MIMIC-IV-Data-Pipeline'
         if os.path.exists('MIMIC-IV-Data-Pipeline-main'):
-            path_bench = dir+'MIMIC-IV-Data-Pipeline-main'
+            path_bench = root+'MIMIC-IV-Data-Pipeline-main'
+            os.chdir(path_bench)
         else:
-            repodir = os.getcwd()
-            path_bench = repodir+'/MIMIC-IV-Data-Pipeline-main'
+            path_bench = root+'MIMIC-IV-Data-Pipeline-main'
             subprocess.run(["git", "clone", repo_url, path_bench])
             os.chdir(path_bench)
-            print('0 : '+ os.getcwd())
-            shutil.move(self.mimic_path, './')
-        os.chdir(path_bench)
+            os.makedirs(m)
+            shutil.move(self.mimic_path, './'+m)
+        print('0 : '+os.getcwd())
 
         #download config file if not custom
         if self.config_path[0:4] == 'http':