thbndi commited on
Commit
d5ee515
·
1 Parent(s): fc31c0a

Update Mimic4Dataset.py

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Files changed (1) hide show
  1. Mimic4Dataset.py +3 -3
Mimic4Dataset.py CHANGED
@@ -654,8 +654,8 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  config = self.config_path.split('/')[-1]
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  #####################create task cohort
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- if not os.path.exists(data_dir):
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- task_cohort(self.config.name.replace(" ","_"),self.mimic_path,config)
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  #####################Split data into train, test and val
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  with open(data_dir, 'rb') as fp:
@@ -890,7 +890,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  demo['gender']=gen_encoder.transform(demo['gender'])
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  demo['ethnicity']=eth_encoder.transform(demo['ethnicity'])
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  demo['insurance']=ins_encoder.transform(demo['insurance'])
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- label = int(data['label'])
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  demo=demo.drop(['label'],axis=1)
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  X= getXY(dyn_df,cond_df,demo,concat_cols,True)
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  X=X.to_numpy()
 
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  config = self.config_path.split('/')[-1]
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  #####################create task cohort
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+ #if not os.path.exists(data_dir):
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+ task_cohort(self.config.name.replace(" ","_"),self.mimic_path,config)
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  #####################Split data into train, test and val
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  with open(data_dir, 'rb') as fp:
 
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  demo['gender']=gen_encoder.transform(demo['gender'])
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  demo['ethnicity']=eth_encoder.transform(demo['ethnicity'])
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  demo['insurance']=ins_encoder.transform(demo['insurance'])
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+ label = data['label']
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  demo=demo.drop(['label'],axis=1)
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  X= getXY(dyn_df,cond_df,demo,concat_cols,True)
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  X=X.to_numpy()