Update Mimic4Dataset.py
Browse files- Mimic4Dataset.py +3 -3
Mimic4Dataset.py
CHANGED
@@ -654,8 +654,8 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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config = self.config_path.split('/')[-1]
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#####################create task cohort
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if not os.path.exists(data_dir):
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#####################Split data into train, test and val
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with open(data_dir, 'rb') as fp:
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@@ -890,7 +890,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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demo['gender']=gen_encoder.transform(demo['gender'])
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demo['ethnicity']=eth_encoder.transform(demo['ethnicity'])
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demo['insurance']=ins_encoder.transform(demo['insurance'])
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label =
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demo=demo.drop(['label'],axis=1)
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X= getXY(dyn_df,cond_df,demo,concat_cols,True)
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X=X.to_numpy()
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config = self.config_path.split('/')[-1]
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#####################create task cohort
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#if not os.path.exists(data_dir):
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task_cohort(self.config.name.replace(" ","_"),self.mimic_path,config)
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#####################Split data into train, test and val
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with open(data_dir, 'rb') as fp:
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demo['gender']=gen_encoder.transform(demo['gender'])
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demo['ethnicity']=eth_encoder.transform(demo['ethnicity'])
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demo['insurance']=ins_encoder.transform(demo['insurance'])
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label = data['label']
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demo=demo.drop(['label'],axis=1)
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X= getXY(dyn_df,cond_df,demo,concat_cols,True)
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X=X.to_numpy()
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