Update cohort.py

cohort.py

@@ -3,20 +3,20 @@ import sys
 from pathlib import Path
 import os
 import importlib
-sys.path.append('preprocessing/day_intervals_preproc')
-sys.path.append('utils')
-sys.path.append('preprocessing/hosp_module_preproc')
-sys.path.append('model')
-#print(sys.path)
-root_dir = os.path.dirname(os.path.abspath('UserInterface.ipynb'))
-import day_intervals_cohort_v2
-import day_intervals_cohort
-import feature_selection_icu
-import data_generation_icu_modify
+import shutil
 import time
 import yaml
 
-def task_cohort(task,mimic_path):
+def task_cohort(task,mimic_path,path_benchmark):
+    root_dir = path_benchmark
+    sys.path.append(path_benchmark+'/preprocessing/day_intervals_preproc')
+    sys.path.append(path_benchmark+'/utils')
+    sys.path.append(path_benchmark+'/preprocessing/hosp_module_preproc')
+    sys.path.append(path_benchmark+'/model')
+    import day_intervals_cohort_v2
+    import day_intervals_cohort
+    import feature_selection_icu
+    import data_generation_icu_modify
     version_path = mimic_path
     version = version_path.split('/')[-1][0]
     start = time.time()