thbndi commited on
Commit
e1ff70f
·
1 Parent(s): 105bc7d

Update Mimic4Dataset.py

Browse files
Files changed (1) hide show
  1. Mimic4Dataset.py +14 -1
Mimic4Dataset.py CHANGED
@@ -67,6 +67,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
67
  self.test_size = kwargs.pop("test_size",0.2)
68
  self.val_size = kwargs.pop("val_size",0.1)
69
  self.generate_cohort = kwargs.pop("generate_cohort",True)
 
70
 
71
  if self.encoding == 'concat':
72
  self.concat = True
@@ -543,7 +544,19 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
543
 
544
  for key, data in dico.items():
545
  cond_text,chart_text,meds_text,proc_text,out_text = generate_text(data,icd,items, self.feat_cond, self.feat_chart, self.feat_meds, self.feat_proc, self.feat_out)
546
- text= cond_text+chart_text+meds_text+proc_text+out_text
 
 
 
 
 
 
 
 
 
 
 
 
547
  yield int(key),{
548
  'label' : data['label'],
549
  'text': text
 
67
  self.test_size = kwargs.pop("test_size",0.2)
68
  self.val_size = kwargs.pop("val_size",0.1)
69
  self.generate_cohort = kwargs.pop("generate_cohort",True)
70
+ self.param = kwargs.pop("param",0)
71
 
72
  if self.encoding == 'concat':
73
  self.concat = True
 
544
 
545
  for key, data in dico.items():
546
  cond_text,chart_text,meds_text,proc_text,out_text = generate_text(data,icd,items, self.feat_cond, self.feat_chart, self.feat_meds, self.feat_proc, self.feat_out)
547
+ for key, data in dico.items():
548
+ cond_text,chart_text,meds_text,proc_text,out_text = generate_text(data,icd,items, self.feat_cond, self.feat_chart, self.feat_meds, self.feat_proc, self.feat_out)
549
+ if self.param==1:
550
+ text= cond_text+chart_text+meds_text+proc_text+out_text
551
+ elif self.param==2:
552
+ text= cond_text
553
+ elif self.param==3:
554
+ text=cond_text+ chart_text
555
+ elif self.param==4:
556
+ text=cond_text+ chart_text+meds_text
557
+ elif self.param==5:
558
+ text=cond_text+ chart_text+meds_text+proc_text
559
+
560
  yield int(key),{
561
  'label' : data['label'],
562
  'text': text