Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -607,30 +607,30 @@ def task_cohort(task, mimic_path, config_path):
     #----------------------------------------------FEATURE SELECTION---------------------------------------------
 
     #----------------------------------------------FEATURE SELECTION---------------------------------------------
-    
+     
     if data_icu:
         if select_chart or select_out or select_diag or select_med or select_proc:
             if select_chart:
-                input('Please modify the file \'preproc_chart_icu.csv.gz\' in the folder /data/features to select the chart items to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/chart_features.csv to select the chart items to keep and press enter to continue')
             if select_out:
-                input('Please modify the file \'preproc_out_icu.csv.gz\' in the folder /data/features to select the output items to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/out_features.csv to select the output items to keep and press enter to continue')
             if select_diag:
-                input('Please modify the file \'preproc_diag_icu.csv.gz\' in the folder /data/features to select the diagnosis ids to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/diag_features.csv to select the diagnosis ids to keep and press enter to continue')
             if select_med:
-                input('Please modify the file \'preproc_med_icu.csv.gz\' in the folder /data/features to select the meds items to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/med_features.csv to select the meds items to keep and press enter to continue')
             if select_proc:
-                input('Please modify the file \'preproc_proc_icu.csv.gz\' in the folder /data/features to select the procedures ids to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/proc_features.csv to select the procedures ids to keep and press enter to continue')
         feature_selection_icu.features_selection_icu(cohort_output, diag_flag,proc_flag,med_flag,out_flag, chart_flag,select_diag,select_med,select_proc,select_out,select_chart)
     else:
         if select_diag or select_med or select_proc or select_lab:
             if select_diag:
-                input('Please modify the file \'preproc_diag.csv.gz\' in the folder /data/features to select the diagnosis ids to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/diag_features.csv to select the diagnosis ids to keep and press enter to continue')
             if select_med:
-                input('Please modify the file \'preproc_med.csv.gz\' in the folder /data/features to select the meds items to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/med_features.csv to select the meds items to keep and press enter to continue')
             if select_proc:
-                input('Please modify the file \'preproc_proc.csv.gz\'  in the folder /data/features to select the procedures ids to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/proc_features.csv to select the procedures ids to keep and press enter to continue')
             if select_lab:
-                input('Please modify the file \'preproc_labs.csv.gz\' in the folder /data/features to select the labs items to keep and press enter to continue')
+                input('Please edit list of codes in ./data/summary/labs_features.csv to select the labs items to keep and press enter to continue')
         feature_selection_hosp.features_selection_hosp(cohort_output, diag_flag,proc_flag,med_flag,lab_flag,select_diag,select_med,select_proc,select_lab)
 
     #---------------------------------------CLEANING OF FEATURES-----------------------------------------------