Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -555,10 +555,6 @@ def task_cohort(task, mimic_path, config_path):
         select_out= False
         select_chart=  False
 
-    
-
-
-
     # -------------------------------------------------------------------------------------------------------------
 
     data_icu=icu_no_icu=="ICU"
@@ -610,9 +606,31 @@ def task_cohort(task, mimic_path, config_path):
         feature_selection_hosp.generate_summary_hosp(diag_flag,proc_flag,med_flag,lab_flag)
     #----------------------------------------------FEATURE SELECTION---------------------------------------------
 
+    #----------------------------------------------FEATURE SELECTION---------------------------------------------
+    
     if data_icu:
+        if select_chart or select_out or select_diag or select_med or select_proc:
+            if select_chart:
+                input('Please modify the file \'preproc_chart_icu.csv.gz\' in the folder /data/features to select the chart items to keep and press enter to continue')
+            if select_out:
+                input('Please modify the file \'preproc_out_icu.csv.gz\' in the folder /data/features to select the output items to keep and press enter to continue')
+            if select_diag:
+                input('Please modify the file \'preproc_diag_icu.csv.gz\' in the folder /data/features to select the diagnosis ids to keep and press enter to continue')
+            if select_med:
+                input('Please modify the file \'preproc_med_icu.csv.gz\' in the folder /data/features to select the meds items to keep and press enter to continue')
+            if select_proc:
+                input('Please modify the file \'preproc_proc_icu.csv.gz\' in the folder /data/features to select the procedures ids to keep and press enter to continue')
         feature_selection_icu.features_selection_icu(cohort_output, diag_flag,proc_flag,med_flag,out_flag, chart_flag,select_diag,select_med,select_proc,select_out,select_chart)
     else:
+        if select_diag or select_med or select_proc or select_lab:
+            if select_diag:
+                input('Please modify the file \'preproc_diag.csv.gz\' in the folder /data/features to select the diagnosis ids to keep and press enter to continue')
+            if select_med:
+                input('Please modify the file \'preproc_med.csv.gz\' in the folder /data/features to select the meds items to keep and press enter to continue')
+            if select_proc:
+                input('Please modify the file \'preproc_proc.csv.gz\'  in the folder /data/features to select the procedures ids to keep and press enter to continue')
+            if select_lab:
+                input('Please modify the file \'preproc_labs.csv.gz\' in the folder /data/features to select the labs items to keep and press enter to continue')
         feature_selection_hosp.features_selection_hosp(cohort_output, diag_flag,proc_flag,med_flag,lab_flag,select_diag,select_med,select_proc,select_lab)
 
     #---------------------------------------CLEANING OF FEATURES-----------------------------------------------