| { | |
| "architectures": [ | |
| "ProteinVec" | |
| ], | |
| "bp_activation": "relu", | |
| "bp_d_model": 1024, | |
| "bp_dim_feedforward": 2048, | |
| "bp_dropout": 0.1, | |
| "bp_lr0": 0.0001, | |
| "bp_nhead": 4, | |
| "bp_num_layers": 4, | |
| "bp_num_variables": 10, | |
| "bp_out_dim": 512, | |
| "bp_p_bernoulli": 0.5, | |
| "bp_vocab": 20, | |
| "bp_warmup_steps": 500, | |
| "cc_activation": "relu", | |
| "cc_d_model": 1024, | |
| "cc_dim_feedforward": 2048, | |
| "cc_dropout": 0.1, | |
| "cc_lr0": 0.0001, | |
| "cc_nhead": 4, | |
| "cc_num_layers": 4, | |
| "cc_num_variables": 10, | |
| "cc_out_dim": 512, | |
| "cc_p_bernoulli": 0.5, | |
| "cc_vocab": 20, | |
| "cc_warmup_steps": 500, | |
| "classifier_dropout": 0.0, | |
| "d_ff": 16384, | |
| "d_kv": 128, | |
| "d_model": 1024, | |
| "dense_act_fn": "relu", | |
| "dropout_rate": 0.1, | |
| "ec_activation": "relu", | |
| "ec_d_model": 1024, | |
| "ec_dim_feedforward": 2048, | |
| "ec_dropout": 0.1, | |
| "ec_lr0": 0.0001, | |
| "ec_nhead": 4, | |
| "ec_num_layers": 2, | |
| "ec_num_variables": 10, | |
| "ec_out_dim": 512, | |
| "ec_p_bernoulli": 0.5, | |
| "ec_vocab": 20, | |
| "ec_warmup_steps": 500, | |
| "eos_token_id": 1, | |
| "feed_forward_proj": "relu", | |
| "gene3d_activation": "relu", | |
| "gene3d_d_model": 1024, | |
| "gene3d_dim_feedforward": 2048, | |
| "gene3d_dropout": 0.1, | |
| "gene3d_lr0": 0.0001, | |
| "gene3d_nhead": 4, | |
| "gene3d_num_layers": 2, | |
| "gene3d_num_variables": 10, | |
| "gene3d_out_dim": 512, | |
| "gene3d_p_bernoulli": 0.5, | |
| "gene3d_vocab": 20, | |
| "gene3d_warmup_steps": 500, | |
| "initializer_factor": 1.0, | |
| "is_gated_act": false, | |
| "layer_norm_epsilon": 1e-06, | |
| "mf_activation": "relu", | |
| "mf_d_model": 1024, | |
| "mf_dim_feedforward": 2048, | |
| "mf_dropout": 0.1, | |
| "mf_lr0": 0.0001, | |
| "mf_nhead": 4, | |
| "mf_num_layers": 4, | |
| "mf_num_variables": 10, | |
| "mf_out_dim": 512, | |
| "mf_p_bernoulli": 0.5, | |
| "mf_vocab": 20, | |
| "mf_warmup_steps": 500, | |
| "model_type": "t5", | |
| "num_decoder_layers": 24, | |
| "num_heads": 32, | |
| "num_layers": 24, | |
| "pad_token_id": 0, | |
| "pfam_activation": "relu", | |
| "pfam_d_model": 1024, | |
| "pfam_dim_feedforward": 2048, | |
| "pfam_dropout": 0.1, | |
| "pfam_lr0": 0.0001, | |
| "pfam_nhead": 4, | |
| "pfam_num_layers": 2, | |
| "pfam_num_variables": 10, | |
| "pfam_out_dim": 512, | |
| "pfam_p_bernoulli": 0.5, | |
| "pfam_vocab": 20, | |
| "pfam_warmup_steps": 500, | |
| "relative_attention_max_distance": null, | |
| "relative_attention_num_buckets": 32, | |
| "tm_activation": "relu", | |
| "tm_d_model": 1024, | |
| "tm_dim_feedforward": 2048, | |
| "tm_dropout": 0.1, | |
| "tm_lr0": 0.0001, | |
| "tm_nhead": 4, | |
| "tm_num_layers": 4, | |
| "tm_out_dim": 512, | |
| "tm_warmup_steps": 300, | |
| "torch_dtype": "float32", | |
| "transformers_version": "4.38.1", | |
| "use_cache": true, | |
| "vec_activation": "relu", | |
| "vec_d_model": 512, | |
| "vec_dim_feedforward": 2048, | |
| "vec_dropout": 0.1, | |
| "vec_lr0": 0.0001, | |
| "vec_nhead": 4, | |
| "vec_num_layers": 2, | |
| "vec_num_variables": 10, | |
| "vec_out_dim": 512, | |
| "vec_p_bernoulli": 0.5, | |
| "vec_vocab": 20, | |
| "vec_warmup_steps": 500, | |
| "vocab_size": 128 | |
| } | |