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README.md
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## ProkBERT-mini-long-phage Model
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This finetuned model is specifically designed for promoter identification and is based on the [ProkBERT-mini-
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For more details, refer to the [pahge dataset description](https://huggingface.co/datasets/neuralbioinfo/phage-test-10k) used for training and evaluating this model.
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from prokbert.prokbert_tokenizer import ProkBERTTokenizer
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from transformers import MegatronBertForSequenceClassification
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finetuned_model = "neuralbioinfo/prokbert-mini-long-phage"
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kmer =
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shift=
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tok_params = {'kmer' : kmer,
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'shift' : shift}
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### Intended Use
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**Intended Use Cases:** ProkBERT-mini-phage is intended for bioinformatics researchers and practitioners focusing on genomic sequence analysis, including:
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- sequence classification tasks
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- Exploration of genomic patterns and features
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---
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## ProkBERT-mini-long-phage Model
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This finetuned model is specifically designed for promoter identification and is based on the [ProkBERT-mini-c model](https://huggingface.co/neuralbioinfo/prokbert-mini-long).
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For more details, refer to the [pahge dataset description](https://huggingface.co/datasets/neuralbioinfo/phage-test-10k) used for training and evaluating this model.
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from prokbert.prokbert_tokenizer import ProkBERTTokenizer
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from transformers import MegatronBertForSequenceClassification
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finetuned_model = "neuralbioinfo/prokbert-mini-long-phage"
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kmer = 1
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shift= 1
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tok_params = {'kmer' : kmer,
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'shift' : shift}
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### Intended Use
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**Intended Use Cases:** ProkBERT-mini-c-phage is intended for bioinformatics researchers and practitioners focusing on genomic sequence analysis, including:
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- sequence classification tasks
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- Exploration of genomic patterns and features
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