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OnClass.data-00000-of-00001 +1 -1
OnClass.index +0 -0
OnClass.meta +0 -0
OnClass.npz +1 -1
accuracies.json +2 -2
celltypist.pkl +1 -1
harmony_knn_classifier.joblib +2 -2
popv_output/predictions.csv +0 -0
preprocessing.json +20 -20
pynndescent_index.joblib +2 -2
scanvi/model.pt +2 -2
scvi/model.pt +1 -1
scvi_knn_classifier.joblib +2 -2
svm_classifier_cuml.joblib +1 -1
xgboost_classifier.model +2 -2

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 412 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 300 | 0.98 | 0.97 | 0.98 | 0.98 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |\n| male germ cell | 7 | 1.00 | 0.93 | 1.00 | 1.00 | 0.00 | 0.93 | 1.00 | 1.00 | 1.00 |\n| spermatogonium | 6 | 0.86 | 0.67 | 0.83 | 0.73 | 0.00 | 0.50 | 0.92 | 0.92 | 0.92 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3597 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 2770 | 0.98 | 0.97 | 0.99 | 0.99 | 0.00 | 0.97 | 0.98 | 0.97 | 0.99 |\n| male germ cell | 109 | 0.96 | 0.95 | 0.98 | 0.97 | 0.00 | 0.94 | 1.00 | 1.00 | 0.98 |\n| spermatogonium | 58 | 0.80 | 0.73 | 0.91 | 0.86 | 0.00 | 0.61 | 0.95 | 0.94 | 0.92 |"
 }

 {
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 410 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.98 | 0.98 | 0.99 |\n| spermatocyte | 300 | 0.97 | 0.96 | 0.98 | 0.98 | 0.00 | 0.95 | 0.98 | 0.97 | 0.98 |\n| male germ cell | 7 | 1.00 | 0.93 | 0.93 | 0.88 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| spermatogonium | 8 | 0.94 | 0.55 | 0.77 | 0.74 | 0.00 | 0.84 | 0.94 | 0.94 | 1.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3599 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 2770 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.96 | 0.98 | 0.97 | 0.99 |\n| male germ cell | 109 | 0.95 | 0.96 | 0.98 | 0.92 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| spermatogonium | 56 | 0.78 | 0.85 | 0.91 | 0.60 | 0.00 | 0.78 | 0.91 | 0.84 | 0.90 |"
 }

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