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popV
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tabula_sapiens_Germline

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Testis
tissue: Ovary
Model card Files Community
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  1. OnClass.data-00000-of-00001 +1 -1
  2. OnClass.index +0 -0
  3. OnClass.meta +0 -0
  4. OnClass.npz +2 -2
  5. accuracies.json +2 -2
  6. celltypist.pkl +1 -1
  7. harmony_knn_classifier.joblib +2 -2
  8. popv_output/predictions.csv +0 -0
  9. preprocessing.json +0 -0
  10. pynndescent_index.joblib +2 -2
  11. scanvi/model.pt +1 -1
  12. scvi/model.pt +1 -1
  13. scvi_knn_classifier.joblib +2 -2
  14. svm_classifier.joblib +1 -1
  15. svm_classifier_cuml.joblib +1 -1
  16. xgboost_classifier.model +2 -2
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- "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 409 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 304 | 0.98 | 0.96 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.97 | 0.98 |\n| male germ cell | 7 | 0.92 | 1.00 | 0.92 | 0.71 | 0.00 | 0.92 | 0.92 | 0.92 | 0.92 |\n| spermatogonium | 6 | 1.00 | 0.50 | 0.80 | 0.25 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |",
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- "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3600 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 2766 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.99 |\n| male germ cell | 109 | 0.96 | 0.96 | 0.98 | 0.90 | 0.00 | 0.99 | 1.00 | 1.00 | 0.98 |\n| spermatogonium | 58 | 0.79 | 0.82 | 0.91 | 0.36 | 0.00 | 0.80 | 0.95 | 0.91 | 0.92 |"
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+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 396 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| spermatocyte | 314 | 0.96 | 0.97 | 0.98 | 0.96 | 0.00 | 0.93 | 0.97 | 0.97 | 0.98 |\n| male germ cell | 10 | 1.00 | 1.00 | 1.00 | 0.91 | 0.00 | 0.77 | 1.00 | 1.00 | 1.00 |\n| spermatogonium | 6 | 0.92 | 0.80 | 0.92 | 0.44 | 0.00 | 0.39 | 0.86 | 0.91 | 0.92 |",
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+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3613 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| spermatocyte | 2756 | 0.98 | 0.97 | 0.99 | 0.98 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |\n| male germ cell | 106 | 0.96 | 0.97 | 0.99 | 0.93 | 0.00 | 0.86 | 1.00 | 0.99 | 0.99 |\n| spermatogonium | 58 | 0.77 | 0.85 | 0.90 | 0.57 | 0.00 | 0.48 | 0.94 | 0.94 | 0.94 |"
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