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tabula_sapiens_Vasculature

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biology
genomics
single-cell
anndata_version:0.11.1
tissue: Vasculature
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@@ -31,27 +31,27 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
33
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | fibroblast | 1252 | 0.97 | 0.96 | 0.98 | 0.98 | 0.00 | 0.94 | 0.97 | 0.97 | 0.98 |
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- | smooth muscle cell | 849 | 0.92 | 0.92 | 0.95 | 0.93 | 0.00 | 0.91 | 0.92 | 0.92 | 0.94 |
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- | macrophage | 761 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.90 | 0.97 | 0.97 | 0.98 |
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- | endothelial cell | 269 | 0.75 | 0.67 | 0.80 | 0.67 | 0.00 | 0.51 | 0.86 | 0.86 | 0.87 |
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- | capillary endothelial cell | 194 | 0.72 | 0.65 | 0.70 | 0.59 | 0.00 | 0.62 | 0.75 | 0.74 | 0.81 |
39
- | pericyte | 186 | 0.80 | 0.85 | 0.89 | 0.81 | 0.00 | 0.74 | 0.81 | 0.78 | 0.86 |
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- | CD8-positive, alpha-beta T cell | 163 | 0.61 | 0.68 | 0.75 | 0.68 | 0.00 | 0.69 | 0.68 | 0.69 | 0.71 |
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- | neutrophil | 136 | 0.98 | 1.00 | 0.98 | 1.00 | 0.00 | 0.99 | 1.00 | 0.98 | 1.00 |
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- | vein endothelial cell | 80 | 0.66 | 0.46 | 0.56 | 0.44 | 0.00 | 0.50 | 0.66 | 0.65 | 0.72 |
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- | CD4-positive, alpha-beta T cell | 91 | 0.69 | 0.74 | 0.79 | 0.66 | 0.00 | 0.75 | 0.75 | 0.75 | 0.77 |
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- | endothelial cell of artery | 68 | 0.88 | 0.88 | 0.89 | 0.83 | 0.00 | 0.70 | 0.84 | 0.83 | 0.88 |
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- | mature NK T cell | 57 | 0.67 | 0.63 | 0.57 | 0.62 | 0.00 | 0.61 | 0.75 | 0.67 | 0.70 |
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- | monocyte | 45 | 0.89 | 0.88 | 0.85 | 0.82 | 0.00 | 0.70 | 0.81 | 0.80 | 0.87 |
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- | basophil | 22 | 0.68 | 0.80 | 0.47 | 0.84 | 0.00 | 0.98 | 1.00 | 0.98 | 0.98 |
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- | natural killer cell | 24 | 0.45 | 0.43 | 0.45 | 0.43 | 0.00 | 0.48 | 0.51 | 0.50 | 0.54 |
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- | endothelial cell of lymphatic vessel | 22 | 0.96 | 0.96 | 0.98 | 0.94 | 0.00 | 0.44 | 0.96 | 0.94 | 0.96 |
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- | mast cell | 17 | 0.00 | 0.67 | 0.38 | 0.83 | 0.00 | 0.92 | 0.97 | 0.94 | 0.94 |
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- | B cell | 16 | 0.93 | 0.93 | 0.93 | 0.85 | 0.00 | 0.78 | 1.00 | 0.88 | 0.93 |
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- | erythrocyte | 4 | 1.00 | 1.00 | 0.89 | 1.00 | 0.00 | 0.57 | 1.00 | 1.00 | 1.00 |
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- | plasma cell | 6 | 1.00 | 0.92 | 1.00 | 0.80 | 0.00 | 0.77 | 0.92 | 0.73 | 1.00 |
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- | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.00 |
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  | intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -61,31 +61,31 @@ The train accuracies are computed on the training data.
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62
  | Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
63
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | fibroblast | 11445 | 0.97 | 0.95 | 0.99 | 0.98 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |
65
- | smooth muscle cell | 7738 | 0.91 | 0.89 | 0.97 | 0.96 | 0.00 | 0.92 | 0.93 | 0.92 | 0.95 |
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- | macrophage | 6757 | 0.97 | 0.98 | 0.98 | 0.99 | 0.00 | 0.91 | 0.97 | 0.98 | 0.99 |
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- | endothelial cell | 2417 | 0.72 | 0.58 | 0.82 | 0.79 | 0.00 | 0.84 | 0.88 | 0.88 | 0.92 |
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- | capillary endothelial cell | 1841 | 0.70 | 0.61 | 0.77 | 0.75 | 0.00 | 0.83 | 0.83 | 0.83 | 0.88 |
69
- | pericyte | 1585 | 0.77 | 0.79 | 0.92 | 0.89 | 0.00 | 0.76 | 0.82 | 0.81 | 0.88 |
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- | CD8-positive, alpha-beta T cell | 1369 | 0.69 | 0.75 | 0.82 | 0.80 | 0.00 | 0.79 | 0.85 | 0.87 | 0.84 |
71
- | neutrophil | 1303 | 0.99 | 0.98 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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- | vein endothelial cell | 796 | 0.59 | 0.32 | 0.64 | 0.66 | 0.00 | 0.77 | 0.78 | 0.80 | 0.83 |
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- | CD4-positive, alpha-beta T cell | 637 | 0.72 | 0.73 | 0.79 | 0.72 | 0.00 | 0.81 | 0.85 | 0.89 | 0.84 |
74
- | endothelial cell of artery | 580 | 0.78 | 0.78 | 0.87 | 0.80 | 0.00 | 0.72 | 0.85 | 0.83 | 0.87 |
75
- | mature NK T cell | 458 | 0.70 | 0.70 | 0.77 | 0.75 | 0.00 | 0.80 | 0.90 | 0.88 | 0.85 |
76
- | monocyte | 382 | 0.85 | 0.83 | 0.88 | 0.89 | 0.00 | 0.72 | 0.80 | 0.80 | 0.89 |
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- | basophil | 222 | 0.72 | 0.75 | 0.77 | 0.96 | 0.00 | 0.95 | 0.99 | 0.98 | 0.98 |
78
- | natural killer cell | 218 | 0.53 | 0.53 | 0.61 | 0.63 | 0.00 | 0.67 | 0.90 | 0.90 | 0.86 |
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- | endothelial cell of lymphatic vessel | 176 | 0.95 | 0.96 | 0.97 | 0.97 | 0.00 | 0.40 | 0.98 | 0.96 | 0.97 |
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- | mast cell | 142 | 0.00 | 0.50 | 0.64 | 0.96 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |
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- | B cell | 132 | 0.97 | 0.97 | 0.97 | 0.95 | 0.00 | 0.87 | 0.99 | 0.99 | 0.99 |
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- | erythrocyte | 79 | 0.97 | 0.96 | 0.81 | 0.96 | 0.00 | 0.83 | 0.98 | 0.89 | 0.98 |
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- | plasma cell | 62 | 0.94 | 0.95 | 0.99 | 0.94 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
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- | T cell | 15 | 0.00 | 0.00 | 0.61 | 0.26 | 0.00 | 0.41 | 1.00 | 1.00 | 0.93 |
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- | intermediate monocyte | 13 | 0.00 | 0.00 | 0.44 | 0.12 | 0.00 | 0.09 | 1.00 | 0.96 | 0.76 |
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- | classical monocyte | 12 | 0.00 | 0.00 | 0.55 | 0.56 | 0.00 | 0.65 | 1.00 | 1.00 | 0.96 |
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- | myeloid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 0.91 | 0.91 | 0.00 |
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- | non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 1.00 | 1.00 | 1.00 |
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90
  </details>
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31
 
32
  | Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
33
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
34
+ | fibroblast | 1246 | 0.97 | 0.96 | 0.98 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.97 |
35
+ | smooth muscle cell | 844 | 0.92 | 0.92 | 0.95 | 0.92 | 0.00 | 0.90 | 0.92 | 0.91 | 0.94 |
36
+ | macrophage | 765 | 0.97 | 0.98 | 0.98 | 0.97 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |
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+ | endothelial cell | 274 | 0.78 | 0.67 | 0.73 | 0.64 | 0.00 | 0.66 | 0.85 | 0.87 | 0.87 |
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+ | capillary endothelial cell | 193 | 0.69 | 0.62 | 0.60 | 0.54 | 0.00 | 0.62 | 0.72 | 0.77 | 0.76 |
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+ | pericyte | 187 | 0.78 | 0.83 | 0.88 | 0.79 | 0.00 | 0.74 | 0.80 | 0.80 | 0.85 |
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+ | CD8-positive, alpha-beta T cell | 165 | 0.67 | 0.68 | 0.72 | 0.69 | 0.00 | 0.67 | 0.63 | 0.67 | 0.72 |
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+ | neutrophil | 137 | 0.95 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 1.00 | 0.98 | 1.00 |
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+ | vein endothelial cell | 80 | 0.63 | 0.38 | 0.53 | 0.31 | 0.00 | 0.54 | 0.65 | 0.67 | 0.73 |
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+ | CD4-positive, alpha-beta T cell | 90 | 0.73 | 0.76 | 0.76 | 0.60 | 0.00 | 0.71 | 0.74 | 0.75 | 0.79 |
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+ | endothelial cell of artery | 67 | 0.83 | 0.87 | 0.88 | 0.73 | 0.00 | 0.73 | 0.82 | 0.83 | 0.85 |
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+ | mature NK T cell | 57 | 0.66 | 0.72 | 0.60 | 0.51 | 0.00 | 0.75 | 0.67 | 0.69 | 0.71 |
46
+ | monocyte | 45 | 0.89 | 0.85 | 0.87 | 0.75 | 0.00 | 0.71 | 0.76 | 0.84 | 0.85 |
47
+ | basophil | 22 | 0.66 | 0.78 | 0.59 | 0.77 | 0.00 | 0.84 | 0.98 | 0.91 | 0.88 |
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+ | natural killer cell | 23 | 0.44 | 0.41 | 0.45 | 0.27 | 0.00 | 0.53 | 0.38 | 0.44 | 0.49 |
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+ | endothelial cell of lymphatic vessel | 22 | 0.96 | 0.98 | 1.00 | 0.94 | 0.00 | 0.92 | 0.96 | 0.96 | 0.98 |
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+ | mast cell | 18 | 0.00 | 0.67 | 0.58 | 0.76 | 0.00 | 0.95 | 0.94 | 0.86 | 0.84 |
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+ | B cell | 16 | 0.93 | 0.93 | 0.90 | 0.88 | 0.00 | 0.82 | 1.00 | 0.88 | 0.93 |
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+ | erythrocyte | 5 | 0.91 | 0.77 | 0.91 | 1.00 | 0.00 | 0.57 | 1.00 | 1.00 | 0.91 |
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+ | plasma cell | 6 | 1.00 | 1.00 | 0.92 | 0.91 | 0.00 | 0.71 | 0.92 | 0.73 | 0.92 |
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+ | T cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.17 | 0.00 | 0.00 | 0.00 |
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  | intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
57
  | myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
61
 
62
  | Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
63
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
64
+ | fibroblast | 11451 | 0.97 | 0.95 | 0.99 | 0.98 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |
65
+ | smooth muscle cell | 7743 | 0.91 | 0.90 | 0.97 | 0.96 | 0.00 | 0.89 | 0.92 | 0.92 | 0.94 |
66
+ | macrophage | 6753 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.95 | 0.98 | 0.97 | 0.99 |
67
+ | endothelial cell | 2412 | 0.77 | 0.62 | 0.84 | 0.79 | 0.00 | 0.84 | 0.87 | 0.88 | 0.91 |
68
+ | capillary endothelial cell | 1842 | 0.72 | 0.62 | 0.78 | 0.75 | 0.00 | 0.79 | 0.81 | 0.85 | 0.88 |
69
+ | pericyte | 1584 | 0.78 | 0.80 | 0.91 | 0.87 | 0.00 | 0.74 | 0.83 | 0.83 | 0.88 |
70
+ | CD8-positive, alpha-beta T cell | 1367 | 0.71 | 0.73 | 0.82 | 0.77 | 0.00 | 0.78 | 0.83 | 0.86 | 0.84 |
71
+ | neutrophil | 1302 | 0.95 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
72
+ | vein endothelial cell | 796 | 0.57 | 0.30 | 0.66 | 0.65 | 0.00 | 0.73 | 0.77 | 0.80 | 0.83 |
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+ | CD4-positive, alpha-beta T cell | 638 | 0.71 | 0.73 | 0.79 | 0.69 | 0.00 | 0.79 | 0.85 | 0.88 | 0.84 |
74
+ | endothelial cell of artery | 581 | 0.77 | 0.80 | 0.88 | 0.79 | 0.00 | 0.74 | 0.85 | 0.85 | 0.88 |
75
+ | mature NK T cell | 458 | 0.67 | 0.70 | 0.75 | 0.62 | 0.00 | 0.79 | 0.87 | 0.87 | 0.85 |
76
+ | monocyte | 382 | 0.85 | 0.83 | 0.87 | 0.86 | 0.00 | 0.74 | 0.80 | 0.78 | 0.89 |
77
+ | basophil | 222 | 0.71 | 0.72 | 0.78 | 0.91 | 0.00 | 0.83 | 0.98 | 0.98 | 0.95 |
78
+ | natural killer cell | 219 | 0.52 | 0.49 | 0.58 | 0.47 | 0.00 | 0.69 | 0.86 | 0.88 | 0.85 |
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+ | endothelial cell of lymphatic vessel | 176 | 0.94 | 0.95 | 0.96 | 0.94 | 0.00 | 0.93 | 0.97 | 0.96 | 0.96 |
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+ | mast cell | 141 | 0.00 | 0.53 | 0.68 | 0.88 | 0.00 | 0.97 | 0.99 | 1.00 | 0.97 |
81
+ | B cell | 132 | 0.96 | 0.96 | 0.96 | 0.95 | 0.00 | 0.95 | 0.99 | 0.98 | 0.99 |
82
+ | erythrocyte | 78 | 0.93 | 0.85 | 0.96 | 0.96 | 0.00 | 0.70 | 0.98 | 0.94 | 0.97 |
83
+ | plasma cell | 62 | 0.97 | 0.94 | 0.98 | 0.98 | 0.00 | 0.93 | 1.00 | 1.00 | 1.00 |
84
+ | T cell | 15 | 0.00 | 0.00 | 0.61 | 0.31 | 0.00 | 0.15 | 0.94 | 0.86 | 0.85 |
85
+ | intermediate monocyte | 13 | 0.00 | 0.00 | 0.24 | 0.13 | 0.00 | 0.12 | 0.96 | 0.81 | 0.60 |
86
+ | classical monocyte | 12 | 0.00 | 0.00 | 0.44 | 0.50 | 0.00 | 0.63 | 1.00 | 1.00 | 0.91 |
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+ | myeloid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 0.71 | 0.43 | 0.00 |
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+ | non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 1.00 | 1.00 | 0.00 |
89
 
90
  </details>
91