fatmacankara commited on
Commit
0c6bc3c
·
1 Parent(s): bf21d03

Update pdb_featureVector.py

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Files changed (1) hide show
  1. pdb_featureVector.py +6 -2
pdb_featureVector.py CHANGED
@@ -248,7 +248,8 @@ def pdb(input_set, mode, impute):
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  seqs[i[2]] += i[4:]
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  else:
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  seqs[i[2]] = i[4:]
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-
 
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  for key, val in seqs.items():
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  seqs[key] = ''.join([threeToOne(i) for i in val])
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  pdb_data_list = [i for i in pdb_data_list if i.startswith('DBREF')]
@@ -290,7 +291,10 @@ def pdb(input_set, mode, impute):
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  index += 1
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  print()
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-
 
 
 
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  print('PDB file processing finished..')
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  for filename in list(Path(path_to_output_files / 'pdb_structures').glob("*")):
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  try:
 
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  seqs[i[2]] += i[4:]
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  else:
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  seqs[i[2]] = i[4:]
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+ st.write('SEQUENCE PDB')
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+ st.write(seqs)
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  for key, val in seqs.items():
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  seqs[key] = ''.join([threeToOne(i) for i in val])
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  pdb_data_list = [i for i in pdb_data_list if i.startswith('DBREF')]
 
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  index += 1
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  print()
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+ st.write('PDB INFO')
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+ st.write(pdb_info)
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+ st.write('PDB FASTA')
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+ st.write('pdb_info')
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  print('PDB file processing finished..')
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  for filename in list(Path(path_to_output_files / 'pdb_structures').glob("*")):
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  try: