Update code/add_alignment.py

code/add_alignment.py

@@ -341,7 +341,7 @@ def final_stage(df, annotation_list, alignment_path):
         print('i',identifier)
         alignment_list = do_alignment(identifier, df.at[i, 'uniprotSequence'], df.at[i, 'pdbSequence'], alignment_path)
         df.at[i, 'pdb_alignStatus'] = mutation_position_on_pdb(alignment_list, df.at[i, 'pos'])[0]
-                df.at[i, 'mutationPositionOnPDB'] = mutation_position_on_pdb(alignment_list, df.at[i, 'pos'])[1]
+        df.at[i, 'mutationPositionOnPDB'] = mutation_position_on_pdb(alignment_list, df.at[i, 'pos'])[1]
         startGap = mutation_position_on_pdb(alignment_list, df.at[i, 'pos'])[2]
         alignment_to_use = mutation_position_on_pdb(alignment_list, df.at[i, 'pos'])[3]
         for annot in annotation_list: