Update code/pdb_featureVector.py

code/pdb_featureVector.py

@@ -1394,8 +1394,8 @@ def pdb(input_set, mode, impute):
             pdbID = data.at[i, 'pdbID']
             print('Das ist pdb seq')
             print(pdbSequence)
-            alignments = get_alignments_3D(uniprotID, 'nan', pdbSequence, source, chain, pdbID, mode,
-                                            file_format='gzip')
+
+            alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
             mutPos = data.at[i, 'mutationPositionOnPDB']
             try:
                 coordMut = get_coords(mutPos, alignments, 'nan', 'nan', mode)[0]