fatmacankara commited on
Commit
741ead2
·
1 Parent(s): 83b0ace

Update code/alphafold_featureVector.py

Browse files
Files changed (1) hide show
  1. code/alphafold_featureVector.py +5 -4
code/alphafold_featureVector.py CHANGED
@@ -689,10 +689,11 @@ def alphafold(input_set, mode, impute):
689
  alignments = alignments[0]
690
  st.write('existing_free_sasa', existing_free_sasa)
691
  st.write('existing_free_sasa', existing_free_sasa)
692
- if ID not in existing_free_sasa:
693
- fullID = f'AF-{uniprotID}-F{mod}-model_v4.pdb.gz'
694
- st.write(fullID)
695
- run_freesasa(pdb_path, Path(path_to_output_files / f'freesasa_files/AF-{uniprotID}-F{mod}.txt'), include_hetatms=True,outdir=None, force_rerun=False)
 
696
  st.write('Calculated')
697
  #calculate_freesasa(uniprotID, mod, existing_free_sasa, alphafold_path, path_to_output_files)
698
  if (mutationPositionOnPDB != 'nan'):
 
689
  alignments = alignments[0]
690
  st.write('existing_free_sasa', existing_free_sasa)
691
  st.write('existing_free_sasa', existing_free_sasa)
692
+
693
+
694
+ #fullID = f'AF-{uniprotID}-F{mod}-model_v4.pdb.gz'
695
+ #st.write(fullID)
696
+ run_freesasa(pdb_path, Path(path_to_output_files / f'freesasa_files/AF-{uniprotID}-F{mod}.txt'), include_hetatms=True,outdir=None, force_rerun=False)
697
  st.write('Calculated')
698
  #calculate_freesasa(uniprotID, mod, existing_free_sasa, alphafold_path, path_to_output_files)
699
  if (mutationPositionOnPDB != 'nan'):