Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -304,6 +304,10 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
             aligner.substitution_matrix = substitution_matrices.load("BLOSUM62")
             aligner.open_gap_score = -11
             aligner.extend_gap_score = -1
+            print('HERE LASTLY')
+            print(pdbSequence)
+            print(atomSequence)
+            print(aligner.align(pdbSequence, atomSequence))
             alignments = aligner.align(pdbSequence, atomSequence)
             alignments = (list(alignments))