fatmacankara commited on
Commit
a746586
·
1 Parent(s): c463218

Update code/pdb_featureVector.py

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Files changed (1) hide show
  1. code/pdb_featureVector.py +5 -2
code/pdb_featureVector.py CHANGED
@@ -1382,8 +1382,11 @@ def pdb(input_set, mode, impute):
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  st.write('i',i)
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  st.write(data.at[i, 'source'])
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  id_ = data.at[i, 'pdbID'].lower()
 
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  up_id_ = data.at[i, 'uniprotID']
 
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  score_ = str(data.at[i, 'score'])
 
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  if data.at[i, 'source'] == 'PDB':
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  pdb_path = Path(path_to_output_files / 'pdb_structures' / f'{id_}.pdb')
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  elif data.at[i, 'source'] == 'MODBASE':
@@ -1391,10 +1394,10 @@ def pdb(input_set, mode, impute):
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  elif data.at[i, 'source'] == 'SWISSMODEL':
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  pdb_path = Path(path_to_output_files / 'swissmodel_structures' / f'{up_id_}_{id_}_{score_}.txt')
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  pdbSequence = data.at[i, 'pdbSequence']
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-
 
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  st.write(uniprotID)
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  st.write(pdb_path)
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- st.write(pdbSequence)
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  st.write(source)
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  st.write(chain)
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  st.write(pdbID)
 
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  st.write('i',i)
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  st.write(data.at[i, 'source'])
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  id_ = data.at[i, 'pdbID'].lower()
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+ st.write('id_', id_)
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  up_id_ = data.at[i, 'uniprotID']
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+ st.write('up_id_', up_id_)
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  score_ = str(data.at[i, 'score'])
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+ st.write('score_', score_)
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  if data.at[i, 'source'] == 'PDB':
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  pdb_path = Path(path_to_output_files / 'pdb_structures' / f'{id_}.pdb')
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  elif data.at[i, 'source'] == 'MODBASE':
 
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  elif data.at[i, 'source'] == 'SWISSMODEL':
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  pdb_path = Path(path_to_output_files / 'swissmodel_structures' / f'{up_id_}_{id_}_{score_}.txt')
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  pdbSequence = data.at[i, 'pdbSequence']
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+ st.write('pdbSequence', pdbSequence)
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+
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  st.write(uniprotID)
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  st.write(pdb_path)
 
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  st.write(source)
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  st.write(chain)
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  st.write(pdbID)