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fatmacankara
commited on
Commit
·
add08b1
1
Parent(s):
29503f2
Update code/pdb_featureVector.py
Browse files
code/pdb_featureVector.py
CHANGED
@@ -232,8 +232,7 @@ def pdb(input_set, mode, impute):
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response.raise_for_status() # Check for a successful response
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except :
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continue # Skip to the next PDB code if fetching fails
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-
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-
st.write(response.text[0:10])
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# Step 2: Parse the PDB file from memory
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pdb_data = response.text
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pdb_parser = PDBParser(QUIET=True) # QUIET=True suppresses warnings
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@@ -249,7 +248,7 @@ def pdb(input_set, mode, impute):
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seqs[i[2]] += i[4:]
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else:
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seqs[i[2]] = i[4:]
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-
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for key, val in seqs.items():
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seqs[key] = ''.join([threeToOne(i) for i in val])
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pdb_data_list = [i for i in pdb_data_list if i.startswith('DBREF')]
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response.raise_for_status() # Check for a successful response
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except :
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continue # Skip to the next PDB code if fetching fails
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+
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# Step 2: Parse the PDB file from memory
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pdb_data = response.text
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pdb_parser = PDBParser(QUIET=True) # QUIET=True suppresses warnings
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seqs[i[2]] += i[4:]
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else:
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seqs[i[2]] = i[4:]
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+
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for key, val in seqs.items():
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seqs[key] = ''.join([threeToOne(i) for i in val])
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pdb_data_list = [i for i in pdb_data_list if i.startswith('DBREF')]
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