fatmacankara commited on
Commit
add08b1
·
1 Parent(s): 29503f2

Update code/pdb_featureVector.py

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Files changed (1) hide show
  1. code/pdb_featureVector.py +2 -3
code/pdb_featureVector.py CHANGED
@@ -232,8 +232,7 @@ def pdb(input_set, mode, impute):
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  response.raise_for_status() # Check for a successful response
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  except :
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  continue # Skip to the next PDB code if fetching fails
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- st.write('response', response)
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- st.write(response.text[0:10])
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  # Step 2: Parse the PDB file from memory
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  pdb_data = response.text
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  pdb_parser = PDBParser(QUIET=True) # QUIET=True suppresses warnings
@@ -249,7 +248,7 @@ def pdb(input_set, mode, impute):
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  seqs[i[2]] += i[4:]
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  else:
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  seqs[i[2]] = i[4:]
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- from Bio.PDB.Polypeptide import *
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  for key, val in seqs.items():
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  seqs[key] = ''.join([threeToOne(i) for i in val])
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  pdb_data_list = [i for i in pdb_data_list if i.startswith('DBREF')]
 
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  response.raise_for_status() # Check for a successful response
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  except :
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  continue # Skip to the next PDB code if fetching fails
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+
 
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  # Step 2: Parse the PDB file from memory
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  pdb_data = response.text
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  pdb_parser = PDBParser(QUIET=True) # QUIET=True suppresses warnings
 
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  seqs[i[2]] += i[4:]
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  else:
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  seqs[i[2]] = i[4:]
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+
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  for key, val in seqs.items():
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  seqs[key] = ''.join([threeToOne(i) for i in val])
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  pdb_data_list = [i for i in pdb_data_list if i.startswith('DBREF')]