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aed628b
1
Parent(s):
99b7583
Update code/pdb_featureVector.py
Browse files
code/pdb_featureVector.py
CHANGED
@@ -1408,6 +1408,8 @@ def pdb(input_set, mode, impute):
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print(pdbID)
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print(mode)
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alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
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mutPos = data.at[i, 'mutationPositionOnPDB']
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try:
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coordMut = get_coords(mutPos, alignments, 'nan', 'nan', mode)[0]
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print(pdbID)
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print(mode)
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alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode, Path(path_to_output_files / '3D_alignment'), file_format = 'gzip')
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print('ALIGNMENTS')
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print(alignments)
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mutPos = data.at[i, 'mutationPositionOnPDB']
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try:
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coordMut = get_coords(mutPos, alignments, 'nan', 'nan', mode)[0]
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