Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -221,12 +221,11 @@ def get_alignments_3D(identifier, model_num, pdbSequence, source, chain, pdbID,
     pdbSequence = convert_non_standard_amino_acids(pdbSequence) 
     if mode == 1:
         print('mode')
-        if source != 'modbase':
-
+        if source != 'MODBASE':
             print('spırce')
             # Step 1: Fetch the PDB file
             pdb_url = f"https://files.rcsb.org/download/{pdbID}.pdb"
-            
+            print('pdb_url')
             response = requests.get(pdb_url)
             response.raise_for_status()  # Check for a successful response
             
@@ -237,6 +236,8 @@ def get_alignments_3D(identifier, model_num, pdbSequence, source, chain, pdbID,
             atomSequence = ''.join([three_to_one(i[3]) for i in atoms])
             coords = [[i[6] ,i[7] ,i[8]] for i in atoms]
             resnums_for_sasa = [i[5] for i in atoms]
+            print('NEW')
+            print(atomSequence)
         else:
             pdb_url = f"https://files.rcsb.org/download/{pdbID}.pdb"