fatmacankara commited on
Commit
c5e7ecc
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1 Parent(s): 749f1f8

Update code/alphafold_featureVector.py

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  1. code/alphafold_featureVector.py +6 -2
code/alphafold_featureVector.py CHANGED
@@ -688,8 +688,6 @@ def alphafold(input_set, mode, impute):
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  alignments = alignments[0]
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- st.write('existing_free_sasa', existing_free_sasa)
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- st.write('existing_free_sasa', existing_free_sasa)
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  #fullID = f'AF-{uniprotID}-F{mod}-model_v4.pdb.gz'
@@ -710,6 +708,12 @@ def alphafold(input_set, mode, impute):
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  sasa_pos = get_coords(mutationPositionOnPDB, alignments, coords, resnums_for_sasa, mode)[2]
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  st.write('sasa_pos', sasa_pos)
 
 
 
 
 
 
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  if sasa_pos != np.NaN:
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  sasa = 'nan'
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  for filename in list(Path(path_to_output_files / 'freesasa_files').glob("*")):
 
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  alignments = alignments[0]
 
 
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  #fullID = f'AF-{uniprotID}-F{mod}-model_v4.pdb.gz'
 
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  sasa_pos = get_coords(mutationPositionOnPDB, alignments, coords, resnums_for_sasa, mode)[2]
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  st.write('sasa_pos', sasa_pos)
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+ st.write('existing_free_sasa', existing_free_sasa)
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+ st.write('existing_free_sasa', existing_free_sasa)
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+
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+
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+ st.write('all', list(Path(path_to_output_files / 'freesasa_files').glob("*")))
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+
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  if sasa_pos != np.NaN:
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  sasa = 'nan'
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  for filename in list(Path(path_to_output_files / 'freesasa_files').glob("*")):