fatmacankara commited on
Commit
f1b36e4
·
1 Parent(s): bc51ec4

Update code/pdb_featureVector.py

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Files changed (1) hide show
  1. code/pdb_featureVector.py +4 -3
code/pdb_featureVector.py CHANGED
@@ -440,11 +440,12 @@ def pdb(input_set, mode, impute):
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  print('Aligning sequences...\n')
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  aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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  aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
 
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  st.write('aligned_m')
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- st.write(aligned_m)
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- st.write('aligned_nm')
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- st.write(aligned_nm)
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  # When PDB sequence is nan, it is wrongly aligned to the UniProt sequence. Fix them.
 
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  print('Aligning sequences...\n')
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  aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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  aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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+
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  st.write('aligned_m')
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+ st.write(aligned_m.iloc[0])
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+ st.write(aligned_m.iloc[0].to_string())
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+
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  # When PDB sequence is nan, it is wrongly aligned to the UniProt sequence. Fix them.