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fatmacankara
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f1b36e4
1
Parent(s):
bc51ec4
Update code/pdb_featureVector.py
Browse files
code/pdb_featureVector.py
CHANGED
@@ -440,11 +440,12 @@ def pdb(input_set, mode, impute):
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print('Aligning sequences...\n')
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aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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st.write('aligned_m')
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st.write(aligned_m)
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st.write(
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# When PDB sequence is nan, it is wrongly aligned to the UniProt sequence. Fix them.
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print('Aligning sequences...\n')
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aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
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+
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st.write('aligned_m')
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st.write(aligned_m.iloc[0])
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st.write(aligned_m.iloc[0].to_string())
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# When PDB sequence is nan, it is wrongly aligned to the UniProt sequence. Fix them.
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