fatmacankara commited on
Commit
f95d1bb
·
1 Parent(s): b5ea29c

Update pdb_featureVector.py

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Files changed (1) hide show
  1. pdb_featureVector.py +2 -1
pdb_featureVector.py CHANGED
@@ -1374,7 +1374,7 @@ def pdb(input_set, mode, impute):
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  aligner = Align.PairwiseAligner()
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  print('Proceeding to 3D distance calculation...\n')
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-
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  data.domainEndonPDB = data.domainEndonPDB.astype(str)
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  data.domainStartonPDB = data.domainStartonPDB.astype(str)
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@@ -1386,6 +1386,7 @@ def pdb(input_set, mode, impute):
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  data['uniprotSequence'] = data['uniprotSequence'].str.replace('U', 'C')
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  data['pdbSequence'] = data['pdbSequence'].str.replace('U', 'C')
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  for i in data.index:
 
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  id_ = data.at[i, 'pdbID'].lower()
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  up_id_ = data.at[i, 'uniprotID']
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  score_ = str(data.at[i, 'score'])
 
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  aligner = Align.PairwiseAligner()
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  print('Proceeding to 3D distance calculation...\n')
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+ st.write(data)
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  data.domainEndonPDB = data.domainEndonPDB.astype(str)
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  data.domainStartonPDB = data.domainStartonPDB.astype(str)
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  data['uniprotSequence'] = data['uniprotSequence'].str.replace('U', 'C')
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  data['pdbSequence'] = data['pdbSequence'].str.replace('U', 'C')
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  for i in data.index:
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+ st.write('iiiii',i)
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  id_ = data.at[i, 'pdbID'].lower()
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  up_id_ = data.at[i, 'uniprotID']
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  score_ = str(data.at[i, 'score'])