added custom download button
Browse files
README.md
CHANGED
@@ -1,6 +1,6 @@
|
|
1 |
---
|
2 |
title: VQGAE
|
3 |
-
emoji:
|
4 |
colorFrom: blue
|
5 |
colorTo: gray
|
6 |
sdk: streamlit
|
|
|
1 |
---
|
2 |
title: VQGAE
|
3 |
+
emoji: 🧪
|
4 |
colorFrom: blue
|
5 |
colorTo: gray
|
6 |
sdk: streamlit
|
app.py
CHANGED
@@ -1,4 +1,9 @@
|
|
|
|
|
|
|
|
1 |
import pickle
|
|
|
|
|
2 |
|
3 |
import numpy as np
|
4 |
import pandas as pd
|
@@ -14,6 +19,89 @@ from streamlit.components.v1 import html
|
|
14 |
MoleculeContainer.depict_settings(aam=False)
|
15 |
|
16 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
17 |
def render_svg(svg_string):
|
18 |
"""Renders the given svg string."""
|
19 |
c = st.container()
|
@@ -330,36 +418,45 @@ if submit:
|
|
330 |
|
331 |
filtered_gen_stats = valid_gen_stats.iloc[filtered_indices]
|
332 |
|
333 |
-
|
334 |
-
|
335 |
-
|
336 |
-
|
337 |
-
|
338 |
-
|
339 |
-
|
340 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
341 |
)
|
342 |
|
343 |
-
st.
|
344 |
-
|
345 |
-
|
346 |
-
|
347 |
-
|
348 |
-
|
349 |
-
|
350 |
-
|
351 |
-
render_svg(svg)
|
352 |
-
|
353 |
-
with st.expander("Show full stats"):
|
354 |
-
st.dataframe(full_stats)
|
355 |
-
|
356 |
-
st.download_button(
|
357 |
-
label="Download full results as CSV",
|
358 |
-
data=convert_df(full_stats),
|
359 |
-
file_name='vqgae_tubulin_inhibitors_full.csv',
|
360 |
-
mime='text/csv',
|
361 |
-
)
|
362 |
-
restart = st.form_submit_button('Restart')
|
363 |
-
|
364 |
-
if restart:
|
365 |
st.rerun()
|
|
|
1 |
+
import base64
|
2 |
+
import os
|
3 |
+
import json
|
4 |
import pickle
|
5 |
+
import uuid
|
6 |
+
import re
|
7 |
|
8 |
import numpy as np
|
9 |
import pandas as pd
|
|
|
19 |
MoleculeContainer.depict_settings(aam=False)
|
20 |
|
21 |
|
22 |
+
def download_button(object_to_download, download_filename, button_text, pickle_it=False):
|
23 |
+
"""
|
24 |
+
Generates a link to download the given object_to_download.
|
25 |
+
Params:
|
26 |
+
------
|
27 |
+
object_to_download: The object to be downloaded.
|
28 |
+
download_filename (str): filename and extension of file. e.g. mydata.csv,
|
29 |
+
some_txt_output.txt download_link_text (str): Text to display for download
|
30 |
+
link.
|
31 |
+
button_text (str): Text to display on download button (e.g. 'click here to download file')
|
32 |
+
pickle_it (bool): If True, pickle file.
|
33 |
+
Returns:
|
34 |
+
-------
|
35 |
+
(str): the anchor tag to download object_to_download
|
36 |
+
Examples:
|
37 |
+
--------
|
38 |
+
download_link(your_df, 'YOUR_DF.csv', 'Click to download data!')
|
39 |
+
download_link(your_str, 'YOUR_STRING.txt', 'Click to download text!')
|
40 |
+
"""
|
41 |
+
if pickle_it:
|
42 |
+
try:
|
43 |
+
object_to_download = pickle.dumps(object_to_download)
|
44 |
+
except pickle.PicklingError as e:
|
45 |
+
st.write(e)
|
46 |
+
return None
|
47 |
+
|
48 |
+
else:
|
49 |
+
if isinstance(object_to_download, bytes):
|
50 |
+
pass
|
51 |
+
|
52 |
+
elif isinstance(object_to_download, pd.DataFrame):
|
53 |
+
object_to_download = object_to_download.to_csv(index=False)
|
54 |
+
|
55 |
+
# Try JSON encode for everything else
|
56 |
+
else:
|
57 |
+
object_to_download = json.dumps(object_to_download)
|
58 |
+
|
59 |
+
try:
|
60 |
+
# some strings <-> bytes conversions necessary here
|
61 |
+
b64 = base64.b64encode(object_to_download.encode()).decode()
|
62 |
+
|
63 |
+
except AttributeError as e:
|
64 |
+
b64 = base64.b64encode(object_to_download).decode()
|
65 |
+
|
66 |
+
button_uuid = str(uuid.uuid4()).replace('-', '')
|
67 |
+
button_id = re.sub('\d+', '', button_uuid)
|
68 |
+
|
69 |
+
custom_css = f"""
|
70 |
+
<style>
|
71 |
+
#{button_id} {{
|
72 |
+
background-color: rgb(255, 255, 255);
|
73 |
+
color: rgb(38, 39, 48);
|
74 |
+
padding: 0.25em 0.38em;
|
75 |
+
position: relative;
|
76 |
+
text-decoration: none;
|
77 |
+
border-radius: 4px;
|
78 |
+
border-width: 1px;
|
79 |
+
border-style: solid;
|
80 |
+
border-color: rgb(230, 234, 241);
|
81 |
+
border-image: initial;
|
82 |
+
}}
|
83 |
+
#{button_id}:hover {{
|
84 |
+
border-color: rgb(246, 51, 102);
|
85 |
+
color: rgb(246, 51, 102);
|
86 |
+
}}
|
87 |
+
#{button_id}:active {{
|
88 |
+
box-shadow: none;
|
89 |
+
background-color: rgb(246, 51, 102);
|
90 |
+
color: white;
|
91 |
+
}}
|
92 |
+
</style> """
|
93 |
+
|
94 |
+
dl_link = custom_css + f'<a download="{download_filename}" id="{button_id}" href="data:file/txt;base64,{b64}">{button_text}</a><br></br>'
|
95 |
+
|
96 |
+
return dl_link
|
97 |
+
|
98 |
+
|
99 |
+
def file_selector(folder_path='.'):
|
100 |
+
filenames = os.listdir(folder_path)
|
101 |
+
selected_filename = st.selectbox('Select a file', filenames)
|
102 |
+
return os.path.join(folder_path, selected_filename)
|
103 |
+
|
104 |
+
|
105 |
def render_svg(svg_string):
|
106 |
"""Renders the given svg string."""
|
107 |
c = st.container()
|
|
|
418 |
|
419 |
filtered_gen_stats = valid_gen_stats.iloc[filtered_indices]
|
420 |
|
421 |
+
st.subheader('Generation results', divider='rainbow')
|
422 |
+
st.dataframe(filtered_gen_stats)
|
423 |
+
download_button(
|
424 |
+
object_to_download=convert_df(filtered_gen_stats),
|
425 |
+
download_filename='vqgae_tubulin_inhibitors_valid.csv',
|
426 |
+
button_text="Download results as CSV"
|
427 |
+
)
|
428 |
+
# st.download_button(
|
429 |
+
# label="Download results as CSV",
|
430 |
+
# data=convert_df(filtered_gen_stats),
|
431 |
+
# file_name='vqgae_tubulin_inhibitors_valid.csv',
|
432 |
+
# mime='text/csv',
|
433 |
+
# )
|
434 |
+
|
435 |
+
st.subheader('Examples of generated molecules')
|
436 |
+
examples_smiles = filtered_gen_stats.sort_values(by=["similarity_score"], ascending=False).iloc[:6].smiles.to_list()
|
437 |
+
examples = []
|
438 |
+
for smi in examples_smiles:
|
439 |
+
mol = smiles(smi)
|
440 |
+
mol.clean2d()
|
441 |
+
examples.append(mol)
|
442 |
+
svg = grid_depict(examples, 2)
|
443 |
+
render_svg(svg)
|
444 |
+
|
445 |
+
with st.expander("Show full stats"):
|
446 |
+
st.dataframe(full_stats)
|
447 |
+
|
448 |
+
download_button(
|
449 |
+
object_to_download=convert_df(full_stats),
|
450 |
+
download_filename='vqgae_tubulin_inhibitors_full.csv',
|
451 |
+
button_text="Download full results as CSV"
|
452 |
)
|
453 |
|
454 |
+
# st.download_button(
|
455 |
+
# label="Download full results as CSV",
|
456 |
+
# data=convert_df(full_stats),
|
457 |
+
# file_name='vqgae_tubulin_inhibitors_full.csv',
|
458 |
+
# mime='text/csv',
|
459 |
+
# )
|
460 |
+
|
461 |
+
if st.button("Restart"):
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
462 |
st.rerun()
|