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Update geneformer/perturber_utils.py

#362
by hchen725 - opened
base: refs/heads/main
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from: refs/pr/362
Discussion Files changed
+836
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hchen725

Edit overexpression of genes to consider cls and eos tokens for perturbed and original

Update geneformer/perturber_utils.py43bb5abe
account for more than 1 gene being overexpressed0f1a8051
update with isp changes to account for cls from prior PRd6e949b5
Update geneformer/in_silico_perturber.py3e24216e
update isp for cls perturb set99f40b48
define ncells for clearing memory428e3b0d
add isp for perturb all with clsbcaf65e7
fix overexpression with anchor genes and add perturbation batch with special tokens91547637
Update geneformer/perturber_utils.pycec6545d
add cls specific option for perturbations93035af6
Update geneformer/perturber_utils.pye8077447
add isp perturb set for special tokens038e0aa9
Update geneformer/in_silico_perturber.py9870991f
clean up if paths87a1a553
update overexpress special0f883779
remove testing prints59ee7f9e
Add mapping of Ensembl ID and summing function162f6494
ctheodoris
 Owner

Merged with recent updates

ctheodoris changed pull request status to closed

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