Can I fine tune geneformer on mRNA expression data?
#460
by
Sheldor7701
- opened
Hello Geneformer developers. Do you think geneformer can be fine tuned on mRNA expression data? Also can you please give me an example of preprocessing expression data for geneformer and fine tuning?
Thanks for your question. Yes, the input is RNA expression from single-cell RNAseq data. Please see the tokenizing scRNAseq data example in the examples folder. Please also see the dataset repository linked in the model card for example input data.
ctheodoris
changed discussion status to
closed
I suppose @Sheldor7701 means the mRNA expression data for bulk RNA-seq.