15 contributors

History: 128 commits

hchen725

Add input for custom gene token dictionary and add str to valid options

221f100 verified 10 months ago

docs
Update readthedocs for classifier 11 months ago
examples
add option for hyperparameter tuning to cc.validate 10 months ago
fine_tuned_models
Add fine-tuned CellClassifier for cardiomyopathy over 1 year ago
geneformer-12L-30M
Upload 12 layer Geneformer model over 1 year ago
geneformer
Add input for custom gene token dictionary and add str to valid options 10 months ago
.gitattributes

1.3 kB

Adding `safetensors` variant of this model (#209) over 1 year ago
.gitignore

3.08 kB

Add gitignore file over 1 year ago
.pre-commit-config.yaml

737 Bytes

Add pre-commit config about 1 year ago
.readthedocs.yaml

396 Bytes

update readthedocs.yaml about 1 year ago
MANIFEST.in

127 Bytes

Fixes to stats and adding gene dict attempt number 2 (#13) over 1 year ago
README.md

6.87 kB

add readthedocs link to model card about 1 year ago
config.json

565 Bytes

upload Geneformer 6L-30M config almost 3 years ago
model.safetensors

41.2 MB
LFS

Adding `safetensors` variant of this model (#209) over 1 year ago
pytorch_model.bin
Detected Pickle imports (4)
- "torch._utils._rebuild_tensor_v2",
- "torch.FloatStorage",
- "torch.LongStorage",
- "collections.OrderedDict"
What is a pickle import?
41.2 MB
LFS

upload Geneformer 6L-30M almost 3 years ago
requirements.txt

295 Bytes

add option for hyperparameter tuning to cc.validate 10 months ago
setup.py

972 Bytes

update dependencies, reinstate compatibility with python<3.9 with typing for List about 1 year ago
training_args.bin
Detected Pickle imports (4)
- "transformers.trainer_utils.IntervalStrategy",
- "transformers.trainer_utils.SchedulerType",
- "transformers.training_args.TrainingArguments",
- "torch.device"
How to fix it?
2.61 kB
LFS

upload training args for Geneformer 6L-30M almost 3 years ago

Detected Pickle imports (4)

Detected Pickle imports (4)