ProteinSelfies / README.md
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metadata
dataset_info:
  features:
    - name: input_ids
      sequence: int32
    - name: aa_seqs
      dtype: string
  splits:
    - name: train
      num_bytes: 61101706188
      num_examples: 9920628
  download_size: 5540646354
  dataset_size: 61101706188
configs:
  - config_name: default
    data_files:
      - split: train
        path: data/train-*

10 million random examples from Uniref50 representative sequences (October 2023) and computed selfies strings. The strings are stored as input ids from a custom selfies tokenizer. A BERT tokenizer with this vocabulary has been uploaded to this dataset under the files.

Intended for atom-wise protein language modeling.