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1 | cell type: airway basal cells,smoking status: smoker | 1300 York Avenue | New York | USA | Weill Cornell Medical College | Yael,,Strulovici-Barel | HiSeq Control Software (Illumina) was used to perform image analysis, base calling and sequence analysis on HiSeq generated sequence images resulting in fastq files.,Expression analysis was performed using Bowtie (v0.12.8.0, http://bowtie-bio.sourceforge.net), Tophat (v2.0.4, http://tophat.cbcb.umd.edu) and Cufflinks (v2.0.2, http://cufflinks.cbcb.umd.edu).,To correct for transcript length and depth of coverage, raw paired-end sequenced reads were converted into fragments per kilobase of exon per million fragments sequenced (FPKM) resulting in the fpkm_tracking files.,Resultant fragments were aligned (mapped) to the reference genome build UCSC hg19 using Bowtie.,Non-aligned reads were segmented using Tophat and re-aligned to the genome, aligning reads that span introns and determining junction splice sites. Cufflinks assembled reads into transcripts and assembled reads merged using Cuffmerge; the reads generated from a transcript are directly proportional to the transcripts relative abundance. For the analysis, Tophat (which automatically runs Bowtie) was run for each read pair in a given lane.,For each read pair, Tophat produced one file which contained all reads mapped to the human_g1k_v37 genome and RefSeq (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz) transcriptome.,This process was carried out independently for each sample lane. Before running Cufflinks, Samtools (v0.1.18.0, http://samtools.sourceforge.net) was used to merge each sample's independent Tophat results into one file. This file contains all of the aligned reads for each read pair. Finally, Cufflinks was run on the merged Tophat output to produce a file with FPKM values for each sample.,Data was analyzed using Tuxedo pipeline software.,Genome_build: GRCh37,Supplementary_files_format_and_content: fpkm_tracking files are text files that include the RefSeq gene and location, the FPKM value, high and low confidence and status. | Total RNA from harvested nonsmoker and smoker basal cells was extracted with TRIzol with subsequent RNA clean-up using the RNeasy MinElute RNA purification kit to remove residual DNA.,The TruSeq RNA Sample Prep Kit (Illumina, San Diego, CA) was utilized as per protocol to generate cDNA that was then purified with QIAquick PCR purification kit (Qiagen, Valencia, CA).,Samples were loaded onto an Illumina flowcell for paired-end 101 x 2 sequencing reactions using the Illumina HiSeq 2000, using a single flow cell with 4 samples multiplexed per lane of flow cell. | GSM1155386 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02191983,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX297216 | GSM1155386 | GSE47718 | 0.004334 | airway basal cells, smoker | Public on May 08 2014 | Jun 06 2013 | 9606 | DGM-11111_LA-BC | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX297216 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02191983 |
|
1 | cell line: HeLa S3,cell type: Cervical cancer,genotype/variation: wild type | 26 Rue D'Ulm | Paris | France | Institut Curie | Genevieve,,Almouzni | Reads were mapped onto the human reference genome (hg19) using STAR mapper v2.1 (https://code.google.com/p/rna-star/) with default settings.,SAM files were converted to BAM files, sorted and indexed using Samtools,Read counts for each gene were calculated using htseq-count from the HTSeq package using gene annotation from Gencode v12 (http://www.gencodegenes.org/),Differential expression analysis was carried out using the R package DESeq.,Genome_build: hg19,Supplementary_files_format_and_content: Read counts for each gene across all cell lines and replicates (merged output from HTSeq) | 5x10^6 cells were used in each case. Total RNA was extracted using the Qiagen Rneasy Mini-kit.,Libraries were prepared using the Epicenter ScriptSeq Strand-specific Library preparation kit with Ribo-Zero and then sequenced on an Illumina Hi-Seq2000 machine. | GSM1155630 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02192682,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX297971 | GSM1155630 | GSE42951 | 0 | Hela S3 WT RNA-seq | Public on Feb 12 2014 | Jun 07 2013 | 9606 | Hela S3 WT RNA-seq Replicate 1 | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX297971 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02192682 |
|
1 | cell line: HeLa S3,cell type: Cervical cancer,genotype/variation: wild type | 26 Rue D'Ulm | Paris | France | Institut Curie | Genevieve,,Almouzni | Reads were mapped onto the human reference genome (hg19) using STAR mapper v2.1 (https://code.google.com/p/rna-star/) with default settings.,SAM files were converted to BAM files, sorted and indexed using Samtools,Read counts for each gene were calculated using htseq-count from the HTSeq package using gene annotation from Gencode v12 (http://www.gencodegenes.org/),Differential expression analysis was carried out using the R package DESeq.,Genome_build: hg19,Supplementary_files_format_and_content: Read counts for each gene across all cell lines and replicates (merged output from HTSeq) | 5x10^6 cells were used in each case. Total RNA was extracted using the Qiagen Rneasy Mini-kit.,Libraries were prepared using the Epicenter ScriptSeq Strand-specific Library preparation kit with Ribo-Zero and then sequenced on an Illumina Hi-Seq2000 machine. | GSM1155631 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02192683,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX297972 | GSM1155631 | GSE42951 | 0 | Hela S3 WT RNA-seq | Public on Feb 12 2014 | Jun 07 2013 | 9606 | Hela S3 WT RNA-seq Replicate 2 | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX297972 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02192683 |
|
1 | cell line: HeLa S3,cell type: Cervical cancer,genotype/variation: wild type | 26 Rue D'Ulm | Paris | France | Institut Curie | Genevieve,,Almouzni | Reads were mapped onto the human reference genome (hg19) using STAR mapper v2.1 (https://code.google.com/p/rna-star/) with default settings.,SAM files were converted to BAM files, sorted and indexed using Samtools,Read counts for each gene were calculated using htseq-count from the HTSeq package using gene annotation from Gencode v12 (http://www.gencodegenes.org/),Differential expression analysis was carried out using the R package DESeq.,Genome_build: hg19,Supplementary_files_format_and_content: Read counts for each gene across all cell lines and replicates (merged output from HTSeq) | 5x10^6 cells were used in each case. Total RNA was extracted using the Qiagen Rneasy Mini-kit.,Libraries were prepared using the Epicenter ScriptSeq Strand-specific Library preparation kit with Ribo-Zero and then sequenced on an Illumina Hi-Seq2000 machine. | GSM1155632 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02192684,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX297973 | GSM1155632 | GSE42951 | 0.187244 | Hela S3 WT RNA-seq | Public on Feb 12 2014 | Jun 07 2013 | 9606 | Hela S3 WT RNA-seq Replicate 3 | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX297973 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02192684 |
|
1 | cell line: HeLa S3,cell type: Cervical cancer,genotype/variation: wild type | 26 Rue D'Ulm | Paris | France | Institut Curie | Genevieve,,Almouzni | Reads were mapped onto the human reference genome (hg19) using STAR mapper v2.1 (https://code.google.com/p/rna-star/) with default settings.,SAM files were converted to BAM files, sorted and indexed using Samtools,Read counts for each gene were calculated using htseq-count from the HTSeq package using gene annotation from Gencode v12 (http://www.gencodegenes.org/),Differential expression analysis was carried out using the R package DESeq.,Genome_build: hg19,Supplementary_files_format_and_content: Read counts for each gene across all cell lines and replicates (merged output from HTSeq) | 5x10^6 cells were used in each case. Total RNA was extracted using the Qiagen Rneasy Mini-kit.,Libraries were prepared using the Epicenter ScriptSeq Strand-specific Library preparation kit with Ribo-Zero and then sequenced on an Illumina Hi-Seq2000 machine. | GSM1155633 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02192685,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX297974 | GSM1155633 | GSE42951 | 0.015432 | eCenH3 RNA-seq | Public on Feb 12 2014 | Jun 07 2013 | 9606 | eCenH3 RNA-seq Replicate 1 | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX297974 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02192685 |
|
1 | cell line: HeLa S3,cell type: Cervical cancer,genotype/variation: wild type | 26 Rue D'Ulm | Paris | France | Institut Curie | Genevieve,,Almouzni | Reads were mapped onto the human reference genome (hg19) using STAR mapper v2.1 (https://code.google.com/p/rna-star/) with default settings.,SAM files were converted to BAM files, sorted and indexed using Samtools,Read counts for each gene were calculated using htseq-count from the HTSeq package using gene annotation from Gencode v12 (http://www.gencodegenes.org/),Differential expression analysis was carried out using the R package DESeq.,Genome_build: hg19,Supplementary_files_format_and_content: Read counts for each gene across all cell lines and replicates (merged output from HTSeq) | 5x10^6 cells were used in each case. Total RNA was extracted using the Qiagen Rneasy Mini-kit.,Libraries were prepared using the Epicenter ScriptSeq Strand-specific Library preparation kit with Ribo-Zero and then sequenced on an Illumina Hi-Seq2000 machine. | GSM1155634 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02192686,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX297975 | GSM1155634 | GSE42951 | 0.001727 | eCenH3 RNA-seq | Public on Feb 12 2014 | Jun 07 2013 | 9606 | eCenH3 RNA-seq Replicate 2 | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX297975 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02192686 |
|
1 | cell line: HeLa S3,cell type: Cervical cancer,genotype/variation: wild type | 26 Rue D'Ulm | Paris | France | Institut Curie | Genevieve,,Almouzni | Reads were mapped onto the human reference genome (hg19) using STAR mapper v2.1 (https://code.google.com/p/rna-star/) with default settings.,SAM files were converted to BAM files, sorted and indexed using Samtools,Read counts for each gene were calculated using htseq-count from the HTSeq package using gene annotation from Gencode v12 (http://www.gencodegenes.org/),Differential expression analysis was carried out using the R package DESeq.,Genome_build: hg19,Supplementary_files_format_and_content: Read counts for each gene across all cell lines and replicates (merged output from HTSeq) | 5x10^6 cells were used in each case. Total RNA was extracted using the Qiagen Rneasy Mini-kit.,Libraries were prepared using the Epicenter ScriptSeq Strand-specific Library preparation kit with Ribo-Zero and then sequenced on an Illumina Hi-Seq2000 machine. | GSM1155635 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02192687,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX297976 | GSM1155635 | GSE42951 | 0 | eCenH3 RNA-seq | Public on Feb 12 2014 | Jun 07 2013 | 9606 | eCenH3 RNA-seq Replicate 3 | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX297976 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02192687 |
|
1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L01,barcode: ATCACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156797 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199423,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302130 | GSM1156797 | GSE47774,GSE47792 | 0.010486 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L01_ATCACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302130 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199423 |
|
1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L01,barcode: ATCACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156798 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199426,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302131 | GSM1156798 | GSE47774,GSE47792 | 0.010493 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L01_ATCACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302131 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199426 |
|
1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L02,barcode: ATCACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156799 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199422,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302132 | GSM1156799 | GSE47774,GSE47792 | 0.00969 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L02_ATCACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302132 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199422 |
|
1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L02,barcode: ATCACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156800 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199424,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302133 | GSM1156800 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L02_ATCACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302133 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199424 |
|
1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L03,barcode: ATCACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156801 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199429,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302134 | GSM1156801 | GSE47774,GSE47792 | 0.017524 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L03_ATCACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302134 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199429 |
|
1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L03,barcode: ATCACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156802 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199425,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302135 | GSM1156802 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L03_ATCACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302135 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199425 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L04,barcode: ATCACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156803 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199427,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302136 | GSM1156803 | GSE47774,GSE47792 | 0.009976 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L04_ATCACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302136 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199427 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L04,barcode: ATCACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156804 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199431,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302137 | GSM1156804 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L04_ATCACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302137 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199431 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L05,barcode: ATCACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156805 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199428,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302138 | GSM1156805 | GSE47774,GSE47792 | 0.011318 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L05_ATCACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302138 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199428 |
|
1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L05,barcode: ATCACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156806 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199430,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302139 | GSM1156806 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L05_ATCACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302139 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199430 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L06,barcode: ATCACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156807 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199434,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302140 | GSM1156807 | GSE47774,GSE47792 | 0.008295 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L06_ATCACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302140 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199434 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L06,barcode: ATCACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156808 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199432,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302141 | GSM1156808 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L06_ATCACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302141 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199432 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L07,barcode: ATCACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156809 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199433,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302142 | GSM1156809 | GSE47774,GSE47792 | 0.010008 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L07_ATCACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302142 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199433 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L07,barcode: ATCACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156810 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199436,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302143 | GSM1156810 | GSE47774,GSE47792 | 0.008812 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L07_ATCACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302143 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199436 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L08,barcode: ATCACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156811 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199435,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302144 | GSM1156811 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L08_ATCACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302144 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199435 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L08,barcode: ATCACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156812 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199437,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302145 | GSM1156812 | GSE47774,GSE47792 | 0.008295 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_1_L08_ATCACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302145 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199437 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L01,barcode: ACAGTG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156813 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199447,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302146 | GSM1156813 | GSE47774,GSE47792 | 0.010253 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L01_ACAGTG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302146 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199447 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L01,barcode: ACAGTG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156814 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199438,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302147 | GSM1156814 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L01_ACAGTG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302147 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199438 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L02,barcode: ACAGTG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156815 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199439,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302148 | GSM1156815 | GSE47774,GSE47792 | 0.014333 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L02_ACAGTG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302148 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199439 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L02,barcode: ACAGTG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156816 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199448,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302149 | GSM1156816 | GSE47774,GSE47792 | 0.009186 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L02_ACAGTG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302149 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199448 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L03,barcode: ACAGTG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156817 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199440,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302150 | GSM1156817 | GSE47774,GSE47792 | 0.01545 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L03_ACAGTG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302150 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199440 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L03,barcode: ACAGTG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156818 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199442,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302151 | GSM1156818 | GSE47774,GSE47792 | 0.007983 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L03_ACAGTG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302151 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199442 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L04,barcode: ACAGTG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156819 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199449,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302152 | GSM1156819 | GSE47774,GSE47792 | 0.008486 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L04_ACAGTG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302152 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199449 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L04,barcode: ACAGTG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156820 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199441,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302153 | GSM1156820 | GSE47774,GSE47792 | 0.015758 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L04_ACAGTG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302153 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199441 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L05,barcode: ACAGTG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156821 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199443,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302154 | GSM1156821 | GSE47774,GSE47792 | 0.002351 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L05_ACAGTG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302154 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199443 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L05,barcode: ACAGTG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156822 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199450,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302155 | GSM1156822 | GSE47774,GSE47792 | 0 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L05_ACAGTG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302155 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199450 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L06,barcode: ACAGTG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156823 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199444,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302156 | GSM1156823 | GSE47774,GSE47792 | 0.008486 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L06_ACAGTG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302156 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199444 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L06,barcode: ACAGTG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156824 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199445,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302157 | GSM1156824 | GSE47774,GSE47792 | 0 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L06_ACAGTG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302157 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199445 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L07,barcode: ACAGTG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156825 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199451,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302158 | GSM1156825 | GSE47774,GSE47792 | 0.009637 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L07_ACAGTG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302158 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199451 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L07,barcode: ACAGTG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156826 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199446,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302159 | GSM1156826 | GSE47774,GSE47792 | 0.009637 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L07_ACAGTG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302159 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199446 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L08,barcode: ACAGTG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156827 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199624,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302160 | GSM1156827 | GSE47774,GSE47792 | 0.010953 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L08_ACAGTG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302160 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199624 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 2,lane: L08,barcode: ACAGTG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156828 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199594,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302161 | GSM1156828 | GSE47774,GSE47792 | 0.013137 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_2_L08_ACAGTG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302161 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199594 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L01,barcode: GATCAG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156829 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199598,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302162 | GSM1156829 | GSE47774,GSE47792 | 0.009703 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L01_GATCAG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302162 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199598 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L01,barcode: GATCAG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156830 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199625,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302163 | GSM1156830 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L01_GATCAG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302163 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199625 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L02,barcode: GATCAG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156831 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199595,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302164 | GSM1156831 | GSE47774,GSE47792 | 0.007738 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L02_GATCAG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302164 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199595 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L02,barcode: GATCAG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156832 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199606,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302165 | GSM1156832 | GSE47774,GSE47792 | 0.008256 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L02_GATCAG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302165 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199606 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L03,barcode: GATCAG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156833 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199623,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302166 | GSM1156833 | GSE47774,GSE47792 | 0.01318 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L03_GATCAG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302166 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199623 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L03,barcode: GATCAG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156834 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199597,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302167 | GSM1156834 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L03_GATCAG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302167 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199597 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L04,barcode: GATCAG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156835 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199603,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302168 | GSM1156835 | GSE47774,GSE47792 | 0.009134 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L04_GATCAG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302168 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199603 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L04,barcode: GATCAG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156836 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199626,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302169 | GSM1156836 | GSE47774,GSE47792 | 0.009472 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L04_GATCAG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302169 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199626 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L05,barcode: GATCAG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156837 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199599,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302170 | GSM1156837 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L05_GATCAG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302170 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199599 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L05,barcode: GATCAG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156838 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199607,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302171 | GSM1156838 | GSE47774,GSE47792 | 0.007738 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L05_GATCAG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302171 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199607 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L06,barcode: GATCAG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156839 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199630,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302172 | GSM1156839 | GSE47774,GSE47792 | 0.009703 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L06_GATCAG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302172 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199630 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L06,barcode: GATCAG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156840 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199605,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302173 | GSM1156840 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L06_GATCAG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302173 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199605 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L07,barcode: GATCAG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156841 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199610,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302174 | GSM1156841 | GSE47774,GSE47792 | 0.009186 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L07_GATCAG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302174 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199610 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L07,barcode: GATCAG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156842 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199627,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302175 | GSM1156842 | GSE47774,GSE47792 | 0.010154 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L07_GATCAG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302175 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199627 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L08,barcode: GATCAG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156843 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199608,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302176 | GSM1156843 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L08_GATCAG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302176 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199608 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 3,lane: L08,barcode: GATCAG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156844 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199611,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302177 | GSM1156844 | GSE47774,GSE47792 | 0.008256 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_3_L08_GATCAG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302177 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199611 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L01,barcode: AGTCAA,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156845 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199632,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302178 | GSM1156845 | GSE47774,GSE47792 | 0.007039 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L01_AGTCAA_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302178 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199632 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L01,barcode: AGTCAA,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156846 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199613,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302179 | GSM1156846 | GSE47774,GSE47792 | 0.007738 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L01_AGTCAA_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302179 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199613 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L02,barcode: AGTCAA,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156847 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199614,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302180 | GSM1156847 | GSE47774,GSE47792 | 0.007738 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L02_AGTCAA_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302180 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199614 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L02,barcode: AGTCAA,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156848 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199631,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302181 | GSM1156848 | GSE47774,GSE47792 | 0.009472 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L02_AGTCAA_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302181 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199631 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L03,barcode: AGTCAA,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156849 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199616,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302182 | GSM1156849 | GSE47774,GSE47792 | 0.00942 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L03_AGTCAA_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302182 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199616 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L03,barcode: AGTCAA,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156850 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199612,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302183 | GSM1156850 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L03_AGTCAA_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302183 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199612 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L04,barcode: AGTCAA,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156851 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199629,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302184 | GSM1156851 | GSE47774,GSE47792 | 0.008308 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L04_AGTCAA_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302184 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199629 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L04,barcode: AGTCAA,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156852 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199621,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302185 | GSM1156852 | GSE47774,GSE47792 | 0.008269 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L04_AGTCAA_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302185 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199621 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L05,barcode: AGTCAA,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156853 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199546,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302186 | GSM1156853 | GSE47774,GSE47792 | 0.007738 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L05_AGTCAA_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302186 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199546 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L05,barcode: AGTCAA,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156854 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199543,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302187 | GSM1156854 | GSE47774,GSE47792 | 0.009937 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L05_AGTCAA_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302187 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199543 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L06,barcode: AGTCAA,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156855 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199547,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302188 | GSM1156855 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L06_AGTCAA_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302188 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199547 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L06,barcode: AGTCAA,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156856 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199557,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302189 | GSM1156856 | GSE47774,GSE47792 | 0.008256 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L06_AGTCAA_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302189 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199557 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L07,barcode: AGTCAA,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156857 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199618,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302190 | GSM1156857 | GSE47774,GSE47792 | 0.008703 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L07_AGTCAA_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302190 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199618 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L07,barcode: AGTCAA,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156858 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199619,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302191 | GSM1156858 | GSE47774,GSE47792 | 0.007738 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L07_AGTCAA_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302191 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199619 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L08,barcode: AGTCAA,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156859 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199628,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302192 | GSM1156859 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L08_AGTCAA_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302192 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199628 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 4,lane: L08,barcode: AGTCAA,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156860 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199617,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302193 | GSM1156860 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_4_L08_AGTCAA_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302193 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199617 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L01,barcode: CGTACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156861 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199539,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302194 | GSM1156861 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L01_CGTACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302194 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199539 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L01,barcode: CGTACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156862 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199540,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302195 | GSM1156862 | GSE47774,GSE47792 | 0.009134 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L01_CGTACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302195 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199540 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L02,barcode: CGTACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156863 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199558,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302196 | GSM1156863 | GSE47774,GSE47792 | 0.009637 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L02_CGTACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302196 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199558 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L02,barcode: CGTACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156864 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199550,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302197 | GSM1156864 | GSE47774,GSE47792 | 0.00942 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L02_CGTACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302197 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199550 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L03,barcode: CGTACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156865 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199548,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302198 | GSM1156865 | GSE47774,GSE47792 | 0.00942 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L03_CGTACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302198 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199548 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L03,barcode: CGTACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156866 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199600,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302199 | GSM1156866 | GSE47774,GSE47792 | 0.008759 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L03_CGTACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302199 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199600 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L04,barcode: CGTACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156867 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199549,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302200 | GSM1156867 | GSE47774,GSE47792 | 0.011318 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L04_CGTACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302200 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199549 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L04,barcode: CGTACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156868 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199551,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302201 | GSM1156868 | GSE47774,GSE47792 | 0.007791 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L04_CGTACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302201 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199551 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L05,barcode: CGTACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156869 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199562,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302202 | GSM1156869 | GSE47774,GSE47792 | 0.014141 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L05_CGTACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302202 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199562 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L05,barcode: CGTACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156870 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199552,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302203 | GSM1156870 | GSE47774,GSE47792 | 0.007738 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L05_CGTACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302203 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199552 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L06,barcode: CGTACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156871 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199553,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302204 | GSM1156871 | GSE47774,GSE47792 | 0.010867 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L06_CGTACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302204 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199553 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L06,barcode: CGTACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156872 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199564,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302205 | GSM1156872 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L06_CGTACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302205 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199564 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L07,barcode: CGTACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156873 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199554,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302206 | GSM1156873 | GSE47774,GSE47792 | 0.008812 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L07_CGTACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302206 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199554 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L07,barcode: CGTACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156874 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199556,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302207 | GSM1156874 | GSE47774,GSE47792 | 0.009472 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L07_CGTACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302207 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199556 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L08,barcode: CGTACG,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156875 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199567,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302208 | GSM1156875 | GSE47774,GSE47792 | 0.009134 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L08_CGTACG_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302208 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199567 |
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1 | seqc sample: A,platform: Illumina HiSeq 2000,site: BGI,library id: 5,lane: L08,barcode: CGTACG,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156876 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199555,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302209 | GSM1156876 | GSE47774,GSE47792 | 0.008242 | Universal Human Reference RNA (UHRR) from Stratagene | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_A_5_L08_CGTACG_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302209 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199555 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L01,barcode: CGATGT,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156877 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199573,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302210 | GSM1156877 | GSE47774,GSE47792 | 0.060926 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L01_CGATGT_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302210 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199573 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L01,barcode: CGATGT,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156878 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199569,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302211 | GSM1156878 | GSE47774,GSE47792 | 0.018152 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L01_CGATGT_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302211 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199569 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L02,barcode: CGATGT,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156879 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199570,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302212 | GSM1156879 | GSE47774,GSE47792 | 0.013513 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L02_CGATGT_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302212 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199570 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L02,barcode: CGATGT,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156880 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199561,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302213 | GSM1156880 | GSE47774,GSE47792 | 0.061118 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L02_CGATGT_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302213 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199561 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L03,barcode: CGATGT,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156881 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199589,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302214 | GSM1156881 | GSE47774,GSE47792 | 0.005945 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L03_CGATGT_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302214 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199589 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L03,barcode: CGATGT,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156882 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199563,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302215 | GSM1156882 | GSE47774,GSE47792 | 0 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L03_CGATGT_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302215 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199563 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L04,barcode: CGATGT,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156883 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199565,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302216 | GSM1156883 | GSE47774,GSE47792 | 0.002821 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L04_CGATGT_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302216 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199565 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L04,barcode: CGATGT,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156884 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199593,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302217 | GSM1156884 | GSE47774,GSE47792 | 0.056535 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L04_CGATGT_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302217 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199593 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L05,barcode: CGATGT,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156885 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199566,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302218 | GSM1156885 | GSE47774,GSE47792 | 0.004741 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L05_CGATGT_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302218 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199566 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L05,barcode: CGATGT,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156886 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199572,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302219 | GSM1156886 | GSE47774,GSE47792 | 0.011091 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L05_CGATGT_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302219 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199572 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L06,barcode: CGATGT,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156887 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199568,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302220 | GSM1156887 | GSE47774,GSE47792 | 0.002975 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L06_CGATGT_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302220 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199568 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L06,barcode: CGATGT,flowcell: BC0AYPACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156888 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199559,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302221 | GSM1156888 | GSE47774,GSE47792 | 0.005945 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L06_CGATGT_BC0AYPACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302221 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199559 |
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1 | seqc sample: B,platform: Illumina HiSeq 2000,site: BGI,library id: 1,lane: L07,barcode: CGATGT,flowcell: AC0AYTACXX | 2005 Songhu Road | Shanghai | China | Fudan University | Leming,,Shi | Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.,Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS,Genome_build: hg19,Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site | Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively. | GSM1156889 | Illumina HiSeq 2000 | May 15 2019 | cDNA | transcriptomic | RNA-Seq | total RNA | Homo sapiens | GPL11154 | BioSample: https://www.ncbi.nlm.nih.gov/biosample/SAMN02199560,SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRX302222 | GSM1156889 | GSE47774,GSE47792 | 0.004178 | Human Brain Reference RNA (HBRR) from Ambion | Public on Aug 08 2014 | Jun 10 2013 | 9606 | SEQC_ILM_BGI_B_1_L07_CGATGT_AC0AYTACXX | SRA | https://www.ncbi.nlm.nih.gov/sra?term=SRX302222 | https://www.ncbi.nlm.nih.gov/biosample/SAMN02199560 |