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PubMed Central Figures Dataset

This dataset contains image-text pairs extracted from figures from papers in the PubMed Central repository. The dataset can be used to train CLIP models.

This repo contains contains a Parquet file containing the metadata of a WebDataset in img2dataset format. The images themselves are not distributed and need to be retrieved. Note that the images cannot be retrieved by an HTTP URL, so img2dataset cannot be used as is to retrieve the data. Instead, the paper id (e.g. PMC7202302) and file name (e.g. gr3.jpg) are provided as identifier for each sample. The papers themselves can be downloaded from the FTP server.

Furthermore, the repo contains a NumPy file which contains the uid of all samples that are not considered duplicates to the DataComp evaluation data. This file can be used to decontaminate the dataset.