Update cohort.py

cohort.py

@@ -7,7 +7,7 @@ import shutil
 import time
 import yaml
 
-def task_cohort(task,mimic_path,path_benchmark):
+def task_cohort(task,mimic_path,path_benchmark, config):
     root_dir = path_benchmark
     sys.path.append(path_benchmark+'/preprocessing/day_intervals_preproc')
     sys.path.append(path_benchmark+'/utils')
@@ -21,21 +21,8 @@ def task_cohort(task,mimic_path,path_benchmark):
     version = version_path.split('/')[-1][0]
     start = time.time()
     #----------------------------------------------config----------------------------------------------------
-    if task=='Mortality':
-        with open('./config/mortality.config') as f:
-            config = yaml.safe_load(f)
-
-    elif task == 'Phenotype':
-        with open('./config/phenotype.config') as f:
-            config = yaml.safe_load(f)
-
-    elif task == 'Length of Stay':
-        with open('./config/los.config') as f:
-            config = yaml.safe_load(f)
-
-    elif task == 'Readmission':
-        with open('./config/readmission.config') as f:
-            config = yaml.safe_load(f)
+    with open(config) as f:
+           config = yaml.safe_load(f)
 
     disease_label =  config['disease_label']
     tim = config['time']